Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

43389837 .. 43390565

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG298600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCATTGTGAAAAGTGTGAGACTAAGAAAATGTGCACGTTGGACAAGAAAGGCGAGGTCTTCATCCTCACGCTAACTGGGCCGGGTGAGCATAGGCTCAACCCGACTCTACTGGATGCAATCCAATCCGCTTTAAACACCGTCCGAGCCGCCGCCACGTCATCCTCCGTAGCCCTGATCACCACCGCACACGGCAAGTTCTTCTCCAACGGCTACGATCTGGACTGGGCCGGGTCGGACAAAGCCCGAGGCGAGCTCATGACCTCGAAGCTCCGGTCGGTCGTGGCCGACTTCATCTCCCTCCCGTTGCCGACCATCGCCGCCGTCACCGGCCACGCCTCAGCCGCCGGCTTCATCCTCGCGCGGTGCCACGACTATGTTTTGATGAGGAAGGACAGGGGGTTTGTCTATATGAGCGAGATGGACATCGCGCTGGTGATTCCGGCTTGGTTTCACGCTCTGATTAAGAACAAGGTCGGATCCGCGGCGGCGCGGCGCGATTTGATGCTCAGAGCGGATAAGATGACGGCGGCGGCGGCCGTGGAGAAGGGGATTGTTGACTCGGCGGTTAATGGCGCGGAGGAGACCGTTGAGGCGGCGGTTAGATTGGGGGAGGAGTTGGTTAGGAGGAAGTGGAAGGGACACGTGTACGCTCAGATTCGCGTTGACTTGATGTCGGAGGTTTTGGAGGAAATCCGAAACCACGACAGTACAAGATCCCGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

242

Amino Acids

26.5

Weight (kDa)

8.65

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	17 - 211	1.8e-23	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	515
AccII	CGCG	8 cut(s)	362, 364, 431, 485, 493, 498, 578, 663
AclWI	GGATC	3 cut(s)	474, 487, 711
AcoI	YGGCCR	3 cut(s)	285, 331, 537
AcvI	CACGTG	1 cut(s)	646
AfaI	GTAC	2 cut(s)	650, 712
AflIII	ACRYGT	2 cut(s)	643, 645
AhdI	GACNNNNNGTC	1 cut(s)	673
AjiI	CACGTC	1 cut(s)	159
AluBI	AGCT	2 cut(s)	256, 271
AluI	AGCT	2 cut(s)	256, 271
Alw21I	GWGCWC	2 cut(s)	38, 258
Alw26I	GTCTC	2 cut(s)	14, 578
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	3 cut(s)	474, 487, 711
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	5 cut(s)	80, 228, 285, 331, 537
ApaLI	GTGCAC	1 cut(s)	34
ArsI	GACNNNNNNTTYG	4 cut(s)	260, 292, 386, 418
AspLEI	GCGC	5 cut(s)	364, 433, 493, 498, 578
AspS9I	GGNCC	2 cut(s)	80, 228
AsuC2I	CCSGG	2 cut(s)	84, 232
AsuHPI	GGTGA	4 cut(s)	98, 172, 319, 448
AvaI	CYCGRG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	2 cut(s)	38, 258
BbvCI	CCTCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	323, 415
BceAI	ACGGC	5 cut(s)	208, 226, 308, 524, 543
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	84, 232
BcoDI	GTCTC	2 cut(s)	14, 578
BfmI	CTRYAG	1 cut(s)	725
Bme1390I	CCNGG	2 cut(s)	84, 232
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	80, 228
BmiI	GGNNCC	2 cut(s)	368, 481
BmrFI	CCNGG	2 cut(s)	84, 232
BmrI	ACTGGG	2 cut(s)	87, 235
BmsI	GCATC	2 cut(s)	106, 495
BmuI	ACTGGG	2 cut(s)	87, 235
BpiI	GAAGAC	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
Bpu10I	CCTNAGC	1 cut(s)	340
BpuMI	CCSGG	2 cut(s)	84, 232
BsaAI	YACGTR	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	247, 483, 540
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse118I	RCCGGY	2 cut(s)	329, 347
Bse1I	ACTGG	3 cut(s)	82, 117, 230
Bse8I	GATNNNNATC	1 cut(s)	425
BseDI	CCNNGG	3 cut(s)	247, 483, 540
BseGI	GGATG	4 cut(s)	63, 121, 161, 354
BseJI	GATNNNNATC	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	354, 523, 668
BseNI	ACTGG	3 cut(s)	82, 117, 230
BseRI	GAGGAG	2 cut(s)	596, 629
BseSI	GKGCMC	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	537
Bsh1236I	CGCG	8 cut(s)	362, 364, 431, 485, 493, 498, 578, 663
Bsh1285I	CGRYCG	3 cut(s)	278, 282, 540
BshFI	GGCC	5 cut(s)	82, 230, 287, 333, 539
BshNI	GGYRCC	1 cut(s)	366
BsiEI	CGRYCG	3 cut(s)	278, 282, 540
BsiHKAI	GWGCWC	2 cut(s)	38, 258
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
BslFI	GGGAC	1 cut(s)	654
BsmAI	GTCTC	2 cut(s)	14, 578
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	5 cut(s)	82, 230, 287, 333, 539
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	38, 258
Bsp143I	GATC	4 cut(s)	177, 217, 479, 716
BspANI	GGCC	5 cut(s)	82, 230, 287, 333, 539
BspCNI	CTCAG	3 cut(s)	353, 522, 667
BspFNI	CGCG	8 cut(s)	362, 364, 431, 485, 493, 498, 578, 663
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	368, 481
BspPI	GGATC	3 cut(s)	474, 487, 711
BspT107I	GGYRCC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	515
BsrFI	RCCGGY	2 cut(s)	329, 347
BsrI	ACTGG	3 cut(s)	82, 117, 230
BssAI	RCCGGY	2 cut(s)	329, 347
BssECI	CCNNGG	3 cut(s)	247, 483, 540
BssMI	GATC	4 cut(s)	177, 217, 479, 716
Bst4CI	ACNGT	4 cut(s)	142, 589, 710, 726
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	254, 349
BstDEI	CTNAG	4 cut(s)	24, 340, 509, 654
BstDSI	CCRYGG	2 cut(s)	483, 540
BstF5I	GGATG	4 cut(s)	63, 121, 161, 354
BstFNI	CGCG	8 cut(s)	362, 364, 431, 485, 493, 498, 578, 663
BstHHI	GCGC	5 cut(s)	364, 433, 493, 498, 578
BstKTI	GATC	4 cut(s)	180, 220, 482, 719
BstMAI	GTCTC	2 cut(s)	14, 578
BstMBI	GATC	4 cut(s)	177, 217, 479, 716
BstMCI	CGRYCG	3 cut(s)	278, 282, 540
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 88, 344, 536
BstSCI	CCNGG	2 cut(s)	82, 230
BstSFI	CTRYAG	1 cut(s)	725
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	8 cut(s)	362, 364, 431, 485, 493, 498, 578, 663
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	479, 716
BstYI	RGATCY	2 cut(s)	479, 716
BstZI	CGGCCG	1 cut(s)	537
BsuRI	GGCC	5 cut(s)	82, 230, 287, 333, 539
BtgI	CCRYGG	2 cut(s)	483, 540
BtgZI	GCGATG	2 cut(s)	301, 412
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	63, 121, 161, 354
Cac8I	GCNNGC	2 cut(s)	254, 349
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	5 cut(s)	364, 433, 493, 498, 578
Cfr10I	RCCGGY	2 cut(s)	329, 347
Cfr13I	GGNCC	2 cut(s)	80, 228
Cfr42I	CCGCGG	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	649, 711
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	2 cut(s)	649, 711
DdeI	CTNAG	4 cut(s)	24, 340, 509, 654
DpnI	GATC	4 cut(s)	179, 219, 481, 718
DpnII	GATC	4 cut(s)	177, 217, 479, 716
DraI	TTTAAA	1 cut(s)	135
DriI	GACNNNNNGTC	1 cut(s)	673
EaeI	YGGCCR	3 cut(s)	285, 331, 537
EagI	CGGCCG	1 cut(s)	537
Eam1105I	GACNNNNNGTC	1 cut(s)	673
Ecl136II	GAGCTC	1 cut(s)	256
EclXI	CGGCCG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	578
Eco52I	CGGCCG	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	256
Eco72I	CACGTG	1 cut(s)	646
Eco88I	CYCGRG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	1 cut(s)	262
FaiI	YATR	5 cut(s)	93, 260, 378, 411, 413
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	4 cut(s)	50, 128, 148, 341
FriOI	GRGCYC	1 cut(s)	258
GlaI	GCGC	5 cut(s)	363, 432, 492, 497, 577
HaeIII	GGCC	5 cut(s)	82, 230, 287, 333, 539
HapII	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
HhaI	GCGC	5 cut(s)	364, 433, 493, 498, 578
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	5 cut(s)	362, 431, 491, 496, 576
HinP1I	GCGC	5 cut(s)	362, 431, 491, 496, 576
HincII	GTYRAC	2 cut(s)	559, 667
HindII	GTYRAC	2 cut(s)	559, 667
HinfI	GANTC	4 cut(s)	106, 439, 560, 658
HpaII	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
HphI	GGTGA	4 cut(s)	98, 172, 319, 448
Hpy166II	GTNNAC	4 cut(s)	36, 559, 649, 667
Hpy188I	TCNGA	8 cut(s)	146, 238, 462, 479, 512, 657, 679, 698
Hpy188III	TCNNGA	3 cut(s)	221, 259, 720
Hpy8I	GTNNAC	4 cut(s)	36, 559, 649, 667
HpyAV	CCTTC	3 cut(s)	385, 541, 631
HpyCH4III	ACNGT	4 cut(s)	142, 589, 710, 726
HpyCH4IV	ACGT	3 cut(s)	38, 158, 645
HpyCH4V	TGCA	3 cut(s)	4, 36, 119
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 88, 344, 536
HpyF3I	CTNAG	4 cut(s)	24, 340, 509, 654
HpySE526I	ACGT	3 cut(s)	38, 158, 645
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	5 cut(s)	362, 431, 491, 496, 576
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	177
KspI	CCGCGG	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	177, 217, 479, 716
LmnI	GCTCC	1 cut(s)	276
LweI	GCATC	2 cut(s)	106, 495
MaeII	ACGT	3 cut(s)	38, 158, 645
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	179, 219, 481, 718
MbiI	CCGCTC	1 cut(s)	515
MboI	GATC	4 cut(s)	177, 217, 479, 716
MboII	GAAGA	2 cut(s)	52, 193
MflI	RGATCY	2 cut(s)	479, 716
MhlI	GDGCHC	2 cut(s)	38, 258
MlyI	GAGTC	2 cut(s)	100, 554
MmeI	TCCRAC	5 cut(s)	21, 216, 231, 457, 657
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	347
MseI	TTAA	3 cut(s)	134, 465, 570
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
MspR9I	CCNGG	2 cut(s)	84, 232
MteI	GCGCNGCGC	1 cut(s)	494
MvnI	CGCG	8 cut(s)	362, 364, 431, 485, 493, 498, 578, 663
MwoI	GCNNNNNNNGC	4 cut(s)	79, 88, 344, 536
NaeI	GCCGGC	1 cut(s)	349
NciI	CCSGG	2 cut(s)	84, 232
NdeII	GATC	4 cut(s)	177, 217, 479, 716
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	2 cut(s)	368, 481
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	439, 658
PleI	GAGTC	2 cut(s)	100, 554
PmaCI	CACGTG	1 cut(s)	646
PmlI	CACGTG	1 cut(s)	646
PpsI	GAGTC	2 cut(s)	100, 554
Ppu21I	YACGTR	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	258
PspCI	CACGTG	1 cut(s)	646
PspN4I	GGNNCC	2 cut(s)	368, 481
PspPI	GGNCC	2 cut(s)	80, 228
PsuI	RGATCY	2 cut(s)	479, 716
RsaI	GTAC	2 cut(s)	650, 712
RsaNI	GTAC	2 cut(s)	649, 711
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	258
SacII	CCGCGG	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	134, 465, 570
Sau3AI	GATC	4 cut(s)	177, 217, 479, 716
Sau96I	GGNCC	2 cut(s)	80, 228
SchI	GAGTC	2 cut(s)	100, 554
ScrFI	CCNGG	2 cut(s)	84, 232
SduI	GDGCHC	2 cut(s)	38, 258
SetI	ASST	9 cut(s)	41, 60, 161, 258, 266, 273, 477, 648, 684
SfaNI	GCATC	2 cut(s)	106, 495
SfcI	CTRYAG	1 cut(s)	725
Sfr303I	CCGCGG	1 cut(s)	486
SgrBI	CCGCGG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	82, 230
TaaI	ACNGT	4 cut(s)	142, 589, 710, 726
TaiI	ACGT	3 cut(s)	41, 161, 648
TaqI	TCGA	1 cut(s)	266
TaqII	GACCGA	1 cut(s)	268
TatI	WGTACW	1 cut(s)	710
TfiI	GAWTC	2 cut(s)	439, 658
Tru1I	TTAA	3 cut(s)	134, 465, 570
Tru9I	TTAA	3 cut(s)	134, 465, 570
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	52, 283, 343
TspGWI	ACGGA	1 cut(s)	157
VneI	GTGCAC	1 cut(s)	34
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.