Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

55553734 .. 55554646

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG330100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTGCACGTTGGACAAGAAAGGCGAGGTCTTCATCCTCACGCTAACTGGGCCGGGTGAGCATAGGCTCAACCCGACTCTACTGGATGCAATCCAATCCGCTTTAAACACCGTCCGAGCCGCCGCCACGTCATCCTCCGTAGCCCTGATCACCACCGCACACGGCAAGTTCTTCTCCAACGGCTACGATCTGGACTGGGCCGGGTCGGACAAAGCCCGAGGCGAGCTCATGACCTCGAAGCTCCGGTCGGTCGTGGCCGACTTCATCTCCCTCCCGTTGCCGACCATCGCCGCCGTCACCGGCCACGCCTCAGCCGCCGGCTTCATCCTCGCGCGGTGCCACGACTATGTTTTGATGAGGAAGGACAGGGGGTTTGTCTATATGAGCGAGATGGACATCGCGCTGGTGATTCCGGCTTGGTTTCACGCTCTGATTAAGAACAAGGTCGGATCCGCGGCGGCGCGGCGCGATTTGATGCTCAGAGCGGATAAGATGACGGCGGCGGCGGCCGTGGAGAAGGGGATTGTTGACTCGGCGGTTAATGGCGCGGAGGAGACCGTTGAGGCGGCGGTTAGATTGGGGGAGGAGTTGGTTAGGAGGAAGTGGAAGGGACACGTGTACGCTCAGATTCGCGTTGACTTGATGTCGGAGGTTTTGGAGGAAATCCGAAACCACGACAGTACAAGATCCCGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

232

Amino Acids

25.28

Weight (kDa)

8.54

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	7 - 201	1.6e-23	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccBSI	CCGCTC	1 cut(s)	485
AccII	CGCG	8 cut(s)	332, 334, 401, 455, 463, 468, 548, 633
AclWI	GGATC	3 cut(s)	444, 457, 681
AcoI	YGGCCR	3 cut(s)	255, 301, 507
AcvI	CACGTG	1 cut(s)	616
AfaI	GTAC	2 cut(s)	620, 682
AflIII	ACRYGT	2 cut(s)	613, 615
AhdI	GACNNNNNGTC	1 cut(s)	643
AjiI	CACGTC	1 cut(s)	129
AluBI	AGCT	2 cut(s)	226, 241
AluI	AGCT	2 cut(s)	226, 241
Alw21I	GWGCWC	2 cut(s)	8, 228
Alw26I	GTCTC	1 cut(s)	548
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	3 cut(s)	444, 457, 681
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	5 cut(s)	50, 198, 255, 301, 507
ApaLI	GTGCAC	1 cut(s)	4
ArsI	GACNNNNNNTTYG	4 cut(s)	230, 262, 356, 388
AspLEI	GCGC	5 cut(s)	334, 403, 463, 468, 548
AspS9I	GGNCC	2 cut(s)	50, 198
AsuC2I	CCSGG	2 cut(s)	54, 202
AsuHPI	GGTGA	4 cut(s)	68, 142, 289, 418
AvaI	CYCGRG	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	8, 228
BbvCI	CCTCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	293, 385
BceAI	ACGGC	5 cut(s)	178, 196, 278, 494, 513
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	54, 202
BcoDI	GTCTC	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	695
Bme1390I	CCNGG	2 cut(s)	54, 202
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	216
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	50, 198
BmiI	GGNNCC	2 cut(s)	338, 451
BmrFI	CCNGG	2 cut(s)	54, 202
BmrI	ACTGGG	2 cut(s)	57, 205
BmsI	GCATC	2 cut(s)	76, 465
BmuI	ACTGGG	2 cut(s)	57, 205
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
Bpu10I	CCTNAGC	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	54, 202
BsaAI	YACGTR	1 cut(s)	616
BsaBI	GATNNNNATC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	217, 453, 510
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse118I	RCCGGY	2 cut(s)	299, 317
Bse1I	ACTGG	3 cut(s)	52, 87, 200
Bse8I	GATNNNNATC	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	217, 453, 510
BseGI	GGATG	4 cut(s)	33, 91, 131, 324
BseJI	GATNNNNATC	1 cut(s)	395
BseMII	CTCAG	3 cut(s)	324, 493, 638
BseNI	ACTGG	3 cut(s)	52, 87, 200
BseRI	GAGGAG	2 cut(s)	566, 599
BseSI	GKGCMC	1 cut(s)	8
BseX3I	CGGCCG	1 cut(s)	507
Bsh1236I	CGCG	8 cut(s)	332, 334, 401, 455, 463, 468, 548, 633
Bsh1285I	CGRYCG	3 cut(s)	248, 252, 510
BshFI	GGCC	5 cut(s)	52, 200, 257, 303, 509
BshNI	GGYRCC	1 cut(s)	336
BsiEI	CGRYCG	3 cut(s)	248, 252, 510
BsiHKAI	GWGCWC	2 cut(s)	8, 228
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	6 cut(s)	53, 201, 244, 300, 318, 413
BslFI	GGGAC	1 cut(s)	624
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	5 cut(s)	52, 200, 257, 303, 509
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	8, 228
Bsp143I	GATC	4 cut(s)	147, 187, 449, 686
BspANI	GGCC	5 cut(s)	52, 200, 257, 303, 509
BspCNI	CTCAG	3 cut(s)	323, 492, 637
BspFNI	CGCG	8 cut(s)	332, 334, 401, 455, 463, 468, 548, 633
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	338, 451
BspPI	GGATC	3 cut(s)	444, 457, 681
BspT107I	GGYRCC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	485
BsrFI	RCCGGY	2 cut(s)	299, 317
BsrI	ACTGG	3 cut(s)	52, 87, 200
BssAI	RCCGGY	2 cut(s)	299, 317
BssECI	CCNNGG	3 cut(s)	217, 453, 510
BssMI	GATC	4 cut(s)	147, 187, 449, 686
Bst4CI	ACNGT	4 cut(s)	112, 559, 680, 696
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	224, 319
BstDEI	CTNAG	3 cut(s)	310, 479, 624
BstDSI	CCRYGG	2 cut(s)	453, 510
BstF5I	GGATG	4 cut(s)	33, 91, 131, 324
BstFNI	CGCG	8 cut(s)	332, 334, 401, 455, 463, 468, 548, 633
BstHHI	GCGC	5 cut(s)	334, 403, 463, 468, 548
BstKTI	GATC	4 cut(s)	150, 190, 452, 689
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	147, 187, 449, 686
BstMCI	CGRYCG	3 cut(s)	248, 252, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 58, 314, 506
BstSCI	CCNGG	2 cut(s)	52, 200
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	8 cut(s)	332, 334, 401, 455, 463, 468, 548, 633
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	449, 686
BstYI	RGATCY	2 cut(s)	449, 686
BstZI	CGGCCG	1 cut(s)	507
BsuRI	GGCC	5 cut(s)	52, 200, 257, 303, 509
BtgI	CCRYGG	2 cut(s)	453, 510
BtgZI	GCGATG	2 cut(s)	271, 382
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	33, 91, 131, 324
Cac8I	GCNNGC	2 cut(s)	224, 319
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	5 cut(s)	334, 403, 463, 468, 548
Cfr10I	RCCGGY	2 cut(s)	299, 317
Cfr13I	GGNCC	2 cut(s)	50, 198
Cfr42I	CCGCGG	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	619, 681
CviAII	CATG	1 cut(s)	229
CviQI	GTAC	2 cut(s)	619, 681
DdeI	CTNAG	3 cut(s)	310, 479, 624
DpnI	GATC	4 cut(s)	149, 189, 451, 688
DpnII	GATC	4 cut(s)	147, 187, 449, 686
DraI	TTTAAA	1 cut(s)	105
DriI	GACNNNNNGTC	1 cut(s)	643
EaeI	YGGCCR	3 cut(s)	255, 301, 507
EagI	CGGCCG	1 cut(s)	507
Eam1105I	GACNNNNNGTC	1 cut(s)	643
Ecl136II	GAGCTC	1 cut(s)	226
EclXI	CGGCCG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	548
Eco52I	CGGCCG	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	226
Eco72I	CACGTG	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	1 cut(s)	232
FaiI	YATR	5 cut(s)	63, 230, 348, 381, 383
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	147
FokI	GGATG	4 cut(s)	20, 98, 118, 311
FriOI	GRGCYC	1 cut(s)	228
GlaI	GCGC	5 cut(s)	333, 402, 462, 467, 547
HaeIII	GGCC	5 cut(s)	52, 200, 257, 303, 509
HapII	CCGG	6 cut(s)	53, 201, 244, 300, 318, 413
HhaI	GCGC	5 cut(s)	334, 403, 463, 468, 548
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	5 cut(s)	332, 401, 461, 466, 546
HinP1I	GCGC	5 cut(s)	332, 401, 461, 466, 546
HincII	GTYRAC	2 cut(s)	529, 637
HindII	GTYRAC	2 cut(s)	529, 637
HinfI	GANTC	4 cut(s)	76, 409, 530, 628
HpaII	CCGG	6 cut(s)	53, 201, 244, 300, 318, 413
HphI	GGTGA	4 cut(s)	68, 142, 289, 418
Hpy166II	GTNNAC	4 cut(s)	6, 529, 619, 637
Hpy188I	TCNGA	8 cut(s)	116, 208, 432, 449, 482, 627, 649, 668
Hpy188III	TCNNGA	3 cut(s)	191, 229, 690
Hpy8I	GTNNAC	4 cut(s)	6, 529, 619, 637
HpyAV	CCTTC	3 cut(s)	355, 511, 601
HpyCH4III	ACNGT	4 cut(s)	112, 559, 680, 696
HpyCH4IV	ACGT	3 cut(s)	8, 128, 615
HpyCH4V	TGCA	2 cut(s)	6, 89
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 58, 314, 506
HpyF3I	CTNAG	3 cut(s)	310, 479, 624
HpySE526I	ACGT	3 cut(s)	8, 128, 615
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	5 cut(s)	332, 401, 461, 466, 546
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	147
KspI	CCGCGG	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	147, 187, 449, 686
LmnI	GCTCC	1 cut(s)	246
LweI	GCATC	2 cut(s)	76, 465
MaeII	ACGT	3 cut(s)	8, 128, 615
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	4 cut(s)	149, 189, 451, 688
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	4 cut(s)	147, 187, 449, 686
MboII	GAAGA	2 cut(s)	22, 163
MflI	RGATCY	2 cut(s)	449, 686
MhlI	GDGCHC	2 cut(s)	8, 228
MlyI	GAGTC	2 cut(s)	70, 524
MmeI	TCCRAC	4 cut(s)	186, 201, 427, 627
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	3 cut(s)	104, 435, 540
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	6 cut(s)	53, 201, 244, 300, 318, 413
MspR9I	CCNGG	2 cut(s)	54, 202
MteI	GCGCNGCGC	1 cut(s)	464
MvnI	CGCG	8 cut(s)	332, 334, 401, 455, 463, 468, 548, 633
MwoI	GCNNNNNNNGC	4 cut(s)	49, 58, 314, 506
NaeI	GCCGGC	1 cut(s)	319
NciI	CCSGG	2 cut(s)	54, 202
NdeII	GATC	4 cut(s)	147, 187, 449, 686
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	2 cut(s)	338, 451
NmeAIII	GCCGAG	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	295
PagI	TCATGA	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	409, 628
PleI	GAGTC	2 cut(s)	70, 524
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	2 cut(s)	70, 524
Ppu21I	YACGTR	1 cut(s)	616
Psp124BI	GAGCTC	1 cut(s)	228
PspCI	CACGTG	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	338, 451
PspPI	GGNCC	2 cut(s)	50, 198
PsuI	RGATCY	2 cut(s)	449, 686
RsaI	GTAC	2 cut(s)	620, 682
RsaNI	GTAC	2 cut(s)	619, 681
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	228
SacII	CCGCGG	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	104, 435, 540
Sau3AI	GATC	4 cut(s)	147, 187, 449, 686
Sau96I	GGNCC	2 cut(s)	50, 198
SchI	GAGTC	2 cut(s)	70, 524
ScrFI	CCNGG	2 cut(s)	54, 202
SduI	GDGCHC	2 cut(s)	8, 228
SetI	ASST	9 cut(s)	11, 30, 131, 228, 236, 243, 447, 618, 654
SfaNI	GCATC	2 cut(s)	76, 465
SfcI	CTRYAG	1 cut(s)	695
Sfr303I	CCGCGG	1 cut(s)	456
SgrBI	CCGCGG	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	52, 200
TaaI	ACNGT	4 cut(s)	112, 559, 680, 696
TaiI	ACGT	3 cut(s)	11, 131, 618
TaqI	TCGA	1 cut(s)	236
TaqII	GACCGA	1 cut(s)	238
TatI	WGTACW	1 cut(s)	680
TfiI	GAWTC	2 cut(s)	409, 628
Tru1I	TTAA	3 cut(s)	104, 435, 540
Tru9I	TTAA	3 cut(s)	104, 435, 540
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	22, 253, 313
TspGWI	ACGGA	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.