Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

17464484 .. 17465185

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21971.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTGCACGTTGGAGAAGAGAGGCGAGGTCTTCATACTCACTTTAACCGGGTCGGGTGAGCATAGACTCAACCCGACTCTACTAGACGCGATTCGATCCGCTTTGAACCAAGTCCGCGCCGCCGCCACGTCATTCTCCGTGGCCCTGATCACCACCGCGCACGGCAAATTCTTCTCCAACGGCTACGATCTGGACTGGGCCGGGTCGGACAAGGTCCGCGGCGATCTCATGACTTCGAAGCTCCGGTTGGTCGTCGCTGATTTCATCACCCTCCCGTGTCCGACGATCGCCGCTGTCACCGGCCACGCCTCCGCCGCGGGGTTCATTCTCGCGCGGTGTCACGACTACGTTGTGATGAGGAAGGACAGGGGGTTTGTATATATGAGTGAGATGGATATCGCGCTGGTGATTCCGGCTTGGTTTCACGCGCTGGTGAAGAACAAGGTCGGATCGGCGACGGCGGTGAGGGACTTGATGCTGAGAGCGGATAAGGTGACGGCGGCGGTGGCGGTGGAGAAGGGGATTATTGACTTGGCGGTTGTTGGCGAGGAGGAGACGGTTGAGGCGGCGGTTAGGATCGGGGAGGAGTTCGTTAGGAGGAAGTGGAAGGGACACGTGTACGCTGGGAATCGGGTTGGGTTGATGTGGGAGGTTTTGGAGGAGATCCGAAAGCTTGACACTAGCACTGGATCGCGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

234

Amino Acids

25.49

Weight (kDa)

8.43

Isoelectric Point (pI)

22.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	23 - 199	2e-20	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	485
AclWI	GGATC	5 cut(s)	90, 457, 584, 658, 697
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	616
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	2 cut(s)	613, 615
AgsI	TTSAA	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	2 cut(s)	241, 673
AluI	AGCT	2 cut(s)	241, 673
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	548
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	5 cut(s)	90, 457, 584, 658, 697
AoxI	GGCC	3 cut(s)	141, 198, 301
ApaLI	GTGCAC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspLEI	GCGC	5 cut(s)	119, 160, 334, 403, 430
AspS9I	GGNCC	3 cut(s)	142, 198, 214
AsuC2I	CCSGG	2 cut(s)	49, 202
AsuHPI	GGTGA	8 cut(s)	68, 142, 259, 289, 418, 445, 475, 505
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	4 cut(s)	178, 196, 474, 513
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	49, 202
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	3 cut(s)	83, 681, 700
BisI	GCNGC	7 cut(s)	120, 123, 220, 291, 315, 501, 567
BlsI	GCNGC	7 cut(s)	121, 124, 221, 292, 316, 502, 568
Bme1390I	CCNGG	2 cut(s)	49, 202
Bme18I	GGWCC	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	3 cut(s)	142, 198, 214
BmrFI	CCNGG	2 cut(s)	49, 202
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	465
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	22
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	49, 202
BsaAI	YACGTR	1 cut(s)	616
BsaBI	GATNNNNATC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	138, 217, 315
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	200, 691
Bse8I	GATNNNNATC	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	138, 217, 315
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	2 cut(s)	200, 691
BseRI	GAGGAG	4 cut(s)	563, 566, 599, 674
BseSI	GKGCMC	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	623
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	143, 200, 303
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	48, 201, 244, 300, 413
BslFI	GGGAC	2 cut(s)	482, 624
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	548
BsmBI	CGTCTC	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	482, 624
BsnI	GGCC	3 cut(s)	143, 200, 303
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
Bsp68I	TCGCGA	1 cut(s)	694
BspANI	GGCC	3 cut(s)	143, 200, 303
BspCNI	CTCAG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	228
BspPI	GGATC	5 cut(s)	90, 457, 584, 658, 697
BspT104I	TTCGAA	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	200, 691
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	138, 217, 315
BssMI	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	616
BstBI	TTCGAA	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	479
BstDSI	CCRYGG	3 cut(s)	138, 217, 315
BstHHI	GCGC	5 cut(s)	119, 160, 334, 403, 430
BstKTI	GATC	9 cut(s)	98, 150, 190, 226, 288, 452, 579, 666, 692
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 506
BstSCI	CCNGG	2 cut(s)	47, 200
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	143, 200, 303
BtgI	CCRYGG	3 cut(s)	138, 217, 315
BtrI	CACGTC	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	684
BtuMI	TCGCGA	1 cut(s)	694
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	5 cut(s)	119, 160, 334, 403, 430
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	142, 198, 214
Cfr42I	CCGCGG	2 cut(s)	220, 318
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	7 cut(s)	143, 183, 200, 241, 303, 416, 673
CviKI_1	RGCY	7 cut(s)	143, 183, 200, 241, 303, 416, 673
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	9 cut(s)	97, 149, 189, 225, 287, 451, 578, 665, 691
DpnII	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	616
EcoRV	GATATC	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	1 cut(s)	232
FaiI	YATR	6 cut(s)	35, 63, 230, 379, 381, 383
FaqI	GGGAC	2 cut(s)	482, 624
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	120, 123, 220, 291, 315, 501, 567
Fsp4HI	GCNGC	7 cut(s)	120, 123, 220, 291, 315, 501, 567
FspBI	CTAG	3 cut(s)	83, 681, 700
GlaI	GCGC	5 cut(s)	118, 159, 333, 402, 429
GluI	GCNGC	7 cut(s)	120, 123, 220, 291, 315, 501, 567
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	3 cut(s)	143, 200, 303
HapII	CCGG	5 cut(s)	48, 201, 244, 300, 413
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	5 cut(s)	119, 160, 334, 403, 430
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	5 cut(s)	117, 158, 332, 401, 428
HinP1I	GCGC	5 cut(s)	117, 158, 332, 401, 428
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	6 cut(s)	66, 76, 91, 409, 628, 696
HpaII	CCGG	5 cut(s)	48, 201, 244, 300, 413
HphI	GGTGA	8 cut(s)	68, 142, 259, 289, 418, 445, 475, 505
Hpy166II	GTNNAC	2 cut(s)	6, 619
Hpy188I	TCNGA	4 cut(s)	208, 282, 449, 668
Hpy188III	TCNNGA	4 cut(s)	191, 229, 341, 693
Hpy8I	GTNNAC	2 cut(s)	6, 619
Hpy99I	CGWCG	3 cut(s)	257, 286, 460
HpyAV	CCTTC	3 cut(s)	355, 511, 601
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	4 cut(s)	8, 128, 348, 615
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 506
HpyF3I	CTNAG	1 cut(s)	479
HpySE526I	ACGT	4 cut(s)	8, 128, 348, 615
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	5 cut(s)	117, 158, 332, 401, 428
Ksp22I	TGATCA	1 cut(s)	147
KspI	CCGCGG	2 cut(s)	220, 318
Kzo9I	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
LmnI	GCTCC	1 cut(s)	246
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	3 cut(s)	83, 681, 700
MaeII	ACGT	4 cut(s)	8, 128, 348, 615
MaeIII	GTNAC	3 cut(s)	295, 338, 493
MalI	GATC	9 cut(s)	97, 149, 189, 225, 287, 451, 578, 665, 691
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
MboII	GAAGA	4 cut(s)	22, 28, 163, 448
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	3 cut(s)	60, 70, 690
MmeI	TCCRAC	4 cut(s)	186, 201, 305, 427
MseI	TTAA	1 cut(s)	44
MspA1I	CMGCKG	3 cut(s)	219, 293, 317
MspI	CCGG	5 cut(s)	48, 201, 244, 300, 413
MspR9I	CCNGG	2 cut(s)	49, 202
MwoI	GCNNNNNNNGC	2 cut(s)	314, 506
NciI	CCSGG	2 cut(s)	49, 202
NdeII	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
NlaIII	CATG	1 cut(s)	232
NmuCI	GTSAC	3 cut(s)	295, 338, 493
NruI	TCGCGA	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	236
PagI	TCATGA	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	91, 409, 628
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	7 cut(s)	121, 124, 221, 292, 316, 502, 568
Ple19I	CGATCG	1 cut(s)	288
PleI	GAGTC	3 cut(s)	60, 70, 690
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	3 cut(s)	60, 70, 690
Ppu21I	YACGTR	1 cut(s)	616
PspCI	CACGTG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	623
PspPI	GGNCC	3 cut(s)	142, 198, 214
PsuI	RGATCY	1 cut(s)	663
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	288
RruI	TCGCGA	1 cut(s)	694
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SacII	CCGCGG	2 cut(s)	220, 318
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	7 cut(s)	120, 123, 220, 291, 315, 501, 567
Sau3AI	GATC	9 cut(s)	95, 147, 187, 223, 285, 449, 576, 663, 689
Sau96I	GGNCC	3 cut(s)	142, 198, 214
SchI	GAGTC	3 cut(s)	60, 70, 690
ScrFI	CCNGG	2 cut(s)	49, 202
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	465
Sfr303I	CCGCGG	2 cut(s)	220, 318
SfuI	TTCGAA	1 cut(s)	236
SgrBI	CCGCGG	2 cut(s)	220, 318
SinI	GGWCC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	3 cut(s)	83, 681, 700
StyD4I	CCNGG	2 cut(s)	47, 200
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	4 cut(s)	11, 131, 351, 618
TaqI	TCGA	2 cut(s)	94, 236
TasI	AATT	1 cut(s)	167
TauI	GCSGC	7 cut(s)	122, 125, 222, 293, 317, 503, 569
TfiI	GAWTC	3 cut(s)	91, 409, 628
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	3 cut(s)	295, 338, 493
Tsp45I	GTSAC	3 cut(s)	295, 338, 493
TspDTI	ATGAA	3 cut(s)	22, 253, 313
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	691
Tth111I	GACNNNGTC	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	3 cut(s)	83, 681, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.