Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

56918949 .. 56919940

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTGCACGTTGGAGAAGAAAGGCGACATCTTCATCCTCACGCTAACTGGGCCAGGTGAGCATAGGCTCAACCCAACTCTACTGGATGCAATCCAATCCGCTTTAAACACCGTCCGAGCCGCCGCCACGTCATCCTCCGTAGCCCTGATCACCACCGCACACGGCAAATTCTTCTCCAACGGCTTCGATCTGGACTGGGCCGGATCGGACAAAGCCCGAGGCGAGCTCATGGCCTCGAAGCTCCGGTCGGTCGTGGCCGACTTCATCTCCCTCCCGGGGTTCGTCTACATGAGCGAGATGGATATCGCGCTTGTGATTCCGGCTTCGGTTCACGCGCTGATTAAGAATAAGGTCGGGTCGGCGGCGGCGCGGCGCGATTTGATGCTCAGAGCGGATAAGATGACGGCGGCGGTGGCCGTGGAGAAGGGGATTGTTGACTCGGCGGTTAATGGCGCGGAGGAGACCGTTGAGGCGGCGGTTAGATTGGGGGAGGAGTTGGTTAGGAGGAAGTGGAAGGGACACGTGTACGCTCAGATTCGCCTTGGCTTGATGTCGGAGGTCTTGGAGGCGATGCGAAACCATGACAGTCCTAGATCCCTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

201

Amino Acids

21.66

Weight (kDa)

7.9

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	5 cut(s)	308, 335, 370, 375, 455
AclWI	GGATC	2 cut(s)	211, 588
AcoI	YGGCCR	2 cut(s)	255, 414
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflIII	ACRYGT	2 cut(s)	520, 522
AjiI	CACGTC	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	226, 241
AluI	AGCT	2 cut(s)	226, 241
Alw21I	GWGCWC	2 cut(s)	8, 228
Alw26I	GTCTC	1 cut(s)	455
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	211, 588
Ama87I	CYCGRG	2 cut(s)	216, 274
AoxI	GGCC	5 cut(s)	50, 198, 231, 255, 414
ApaLI	GTGCAC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	5 cut(s)	310, 337, 370, 375, 455
AspS9I	GGNCC	2 cut(s)	50, 198
AsuC2I	CCSGG	2 cut(s)	275, 276
AsuHPI	GGTGA	2 cut(s)	68, 142
AvaI	CYCGRG	2 cut(s)	216, 274
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	523
Bbv12I	GWGCWC	2 cut(s)	8, 228
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	4 cut(s)	178, 196, 401, 420
BciT130I	CCWGG	1 cut(s)	54
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	275, 276
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	602
BisI	GCNGC	7 cut(s)	120, 123, 363, 366, 371, 408, 474
BlsI	GCNGC	7 cut(s)	121, 124, 364, 367, 372, 409, 475
Bme1390I	CCNGG	3 cut(s)	54, 275, 276
BmeT110I	CYCGRG	2 cut(s)	216, 274
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	50, 198
BmrFI	CCNGG	3 cut(s)	54, 275, 276
BmrI	ACTGGG	2 cut(s)	57, 205
BmsI	GCATC	3 cut(s)	76, 372, 561
BmuI	ACTGGG	2 cut(s)	57, 205
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpuMI	CCSGG	2 cut(s)	275, 276
BsaAI	YACGTR	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	5 cut(s)	217, 274, 275, 417, 541
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	3 cut(s)	52, 87, 200
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	5 cut(s)	217, 274, 275, 417, 541
BseGI	GGATG	3 cut(s)	33, 91, 131
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	400, 545
BseNI	ACTGG	3 cut(s)	52, 87, 200
BseRI	GAGGAG	2 cut(s)	473, 506
BseSI	GKGCMC	1 cut(s)	8
Bsh1236I	CGCG	5 cut(s)	308, 335, 370, 375, 455
Bsh1285I	CGRYCG	2 cut(s)	248, 252
BshFI	GGCC	5 cut(s)	52, 200, 233, 257, 416
BsiEI	CGRYCG	2 cut(s)	248, 252
BsiHKAI	GWGCWC	2 cut(s)	8, 228
BsiHKCI	CYCGRG	2 cut(s)	216, 274
BsiSI	CCGG	4 cut(s)	201, 244, 275, 320
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	5 cut(s)	52, 200, 233, 257, 416
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	2 cut(s)	216, 274
Bsp1286I	GDGCHC	2 cut(s)	8, 228
Bsp143I	GATC	4 cut(s)	147, 187, 203, 593
BspANI	GGCC	5 cut(s)	52, 200, 233, 257, 416
BspCNI	CTCAG	2 cut(s)	399, 544
BspFNI	CGCG	5 cut(s)	308, 335, 370, 375, 455
BspPI	GGATC	2 cut(s)	211, 588
BspTNI	GGTCTC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	392
BsrI	ACTGG	3 cut(s)	52, 87, 200
BssECI	CCNNGG	5 cut(s)	217, 274, 275, 417, 541
BssMI	GATC	4 cut(s)	147, 187, 203, 593
BssT1I	CCWWGG	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	112, 466, 587, 603
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	386, 531
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	33, 91, 131
BstFNI	CGCG	5 cut(s)	308, 335, 370, 375, 455
BstHHI	GCGC	5 cut(s)	310, 337, 370, 375, 455
BstKTI	GATC	4 cut(s)	150, 190, 206, 596
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	147, 187, 203, 593
BstMCI	CGRYCG	2 cut(s)	248, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 58, 413
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	52, 273, 274
BstSFI	CTRYAG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	5 cut(s)	308, 335, 370, 375, 455
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	5 cut(s)	52, 200, 233, 257, 416
BtgI	CCRYGG	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	584
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	33, 91, 131
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	5 cut(s)	310, 337, 370, 375, 455
Cfr13I	GGNCC	2 cut(s)	50, 198
Cfr9I	CCCGGG	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	3 cut(s)	229, 289, 581
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	2 cut(s)	386, 531
DpnI	GATC	4 cut(s)	149, 189, 205, 595
DpnII	GATC	4 cut(s)	147, 187, 203, 593
DraI	TTTAAA	1 cut(s)	105
EaeI	YGGCCR	2 cut(s)	255, 414
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	455
Eco32I	GATATC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	226
Eco72I	CACGTG	1 cut(s)	523
Eco88I	CYCGRG	2 cut(s)	216, 274
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	3 cut(s)	232, 292, 584
FaiI	YATR	4 cut(s)	63, 230, 290, 582
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	3 cut(s)	228, 288, 580
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	7 cut(s)	120, 123, 363, 366, 371, 408, 474
FokI	GGATG	3 cut(s)	20, 98, 118
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	7 cut(s)	120, 123, 363, 366, 371, 408, 474
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	5 cut(s)	309, 336, 369, 374, 454
GluI	GCNGC	7 cut(s)	120, 123, 363, 366, 371, 408, 474
HaeIII	GGCC	5 cut(s)	52, 200, 233, 257, 416
HapII	CCGG	4 cut(s)	201, 244, 275, 320
HhaI	GCGC	5 cut(s)	310, 337, 370, 375, 455
Hin1II	CATG	3 cut(s)	232, 292, 584
Hin6I	GCGC	5 cut(s)	308, 335, 368, 373, 453
HinP1I	GCGC	5 cut(s)	308, 335, 368, 373, 453
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	316, 437, 535
HpaII	CCGG	4 cut(s)	201, 244, 275, 320
HphI	GGTGA	2 cut(s)	68, 142
Hpy166II	GTNNAC	5 cut(s)	6, 286, 331, 436, 526
Hpy188I	TCNGA	5 cut(s)	116, 208, 389, 534, 556
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	5 cut(s)	6, 286, 331, 436, 526
HpyAV	CCTTC	2 cut(s)	418, 508
HpyCH4III	ACNGT	4 cut(s)	112, 466, 587, 603
HpyCH4IV	ACGT	3 cut(s)	8, 128, 522
HpyCH4V	TGCA	2 cut(s)	6, 89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 58, 413
HpyF3I	CTNAG	2 cut(s)	386, 531
HpySE526I	ACGT	3 cut(s)	8, 128, 522
Hsp92II	CATG	3 cut(s)	232, 292, 584
HspAI	GCGC	5 cut(s)	308, 335, 368, 373, 453
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	147, 187, 203, 593
LmnI	GCTCC	1 cut(s)	246
LweI	GCATC	3 cut(s)	76, 372, 561
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	3 cut(s)	8, 128, 522
MalI	GATC	4 cut(s)	149, 189, 205, 595
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	4 cut(s)	147, 187, 203, 593
MboII	GAAGA	3 cut(s)	22, 28, 163
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	8, 228
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	2 cut(s)	201, 534
MseI	TTAA	3 cut(s)	104, 342, 447
MspI	CCGG	4 cut(s)	201, 244, 275, 320
MspR9I	CCNGG	3 cut(s)	54, 275, 276
MteI	GCGCNGCGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	5 cut(s)	308, 335, 370, 375, 455
MwoI	GCNNNNNNNGC	3 cut(s)	49, 58, 413
NciI	CCSGG	2 cut(s)	275, 276
NdeII	GATC	4 cut(s)	147, 187, 203, 593
NlaIII	CATG	3 cut(s)	232, 292, 584
NmeAIII	GCCGAG	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	316, 535
PkrI	GCNGC	7 cut(s)	121, 124, 364, 367, 372, 409, 475
PleI	GAGTC	1 cut(s)	431
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	52
PspCI	CACGTG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	50, 198
PsuI	RGATCY	1 cut(s)	593
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	104, 342, 447
SatI	GCNGC	7 cut(s)	120, 123, 363, 366, 371, 408, 474
Sau3AI	GATC	4 cut(s)	147, 187, 203, 593
Sau96I	GGNCC	2 cut(s)	50, 198
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	3 cut(s)	54, 275, 276
SduI	GDGCHC	2 cut(s)	8, 228
SetI	ASST	8 cut(s)	11, 58, 131, 228, 243, 354, 525, 561
SfaNI	GCATC	3 cut(s)	76, 372, 561
SfcI	CTRYAG	1 cut(s)	602
SmaI	CCCGGG	1 cut(s)	276
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	52, 273, 274
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	4 cut(s)	112, 466, 587, 603
TaiI	ACGT	3 cut(s)	11, 131, 525
TaqI	TCGA	2 cut(s)	186, 236
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	1 cut(s)	167
TauI	GCSGC	7 cut(s)	122, 125, 365, 368, 373, 410, 476
TfiI	GAWTC	2 cut(s)	316, 535
Tru1I	TTAA	3 cut(s)	104, 342, 447
Tru9I	TTAA	3 cut(s)	104, 342, 447
TspDTI	ATGAA	2 cut(s)	22, 253
TspGWI	ACGGA	1 cut(s)	127
TspMI	CCCGGG	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	167
XmaI	CCCGGG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.