Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

18958 .. 19686

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000250.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgcattgtgaaaagtgtgagactaagaaaatgtgcacgttggacaagaaaggcgaggtcttcatcctcaccctaactggcccgggtgagcataggctcaacccaactctactggacgcaatccaatccgctttaaacaccgtccgagccgccgccacgtcatcctccgtagccctgatcaccaccgcacacggcaaattcttctccaacggctacgatctggactgggccgggtcggacaaagcccgaagcgagctcatgaactcgaagctccggtcggtagtggccgacttcatctccctcccgttgccgaccatcgccgctgtcaccggccacgcctccgccgccggcttcatccttgcgcggtgccacgactacgttctgatgaggaaggacagggggttcgtctatatgagcgagatggacatcgcgctggtgattccggcttggtttcacgcgctgattaagaacaaggtcggatcggcggcggcgcggcgcgatttgatacttagagcggataagatgacggcggcggtggccgtggagaaggggattgttgactcggcggttaatggcgcggaggagacctttgaggcggcggttagattgggggaggagttggttaggaggaaatggaagggacacgtgtacgctcagattcgcgttgacttgatgtcggaggttttggaggaaatccgaaacaatgacagtacaagatcccgtctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

242

Amino Acids

26.58

Weight (kDa)

8.65

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	515
AccII	CGCG	7 cut(s)	364, 431, 458, 493, 498, 578, 663
AclWI	GGATC	2 cut(s)	487, 711
AcoI	YGGCCR	3 cut(s)	285, 331, 537
AcsI	RAATTY	1 cut(s)	197
AcvI	CACGTG	1 cut(s)	646
AfaI	GTAC	2 cut(s)	650, 712
AflIII	ACRYGT	2 cut(s)	643, 645
AhdI	GACNNNNNGTC	1 cut(s)	673
AjiI	CACGTC	1 cut(s)	159
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	2 cut(s)	256, 271
AluI	AGCT	2 cut(s)	256, 271
Alw21I	GWGCWC	2 cut(s)	38, 258
Alw26I	GTCTC	2 cut(s)	14, 578
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	487, 711
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	5 cut(s)	79, 228, 285, 331, 537
ApaLI	GTGCAC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	197
ArsI	GACNNNNNNTTYG	4 cut(s)	260, 292, 386, 418
AspLEI	GCGC	6 cut(s)	364, 433, 460, 493, 498, 578
AspS9I	GGNCC	2 cut(s)	80, 228
AsuC2I	CCSGG	3 cut(s)	83, 84, 232
AsuHPI	GGTGA	5 cut(s)	61, 98, 172, 319, 448
AvaI	CYCGRG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	2 cut(s)	38, 258
BccI	CCATC	2 cut(s)	323, 415
BceAI	ACGGC	4 cut(s)	208, 226, 524, 543
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	3 cut(s)	83, 84, 232
BcoDI	GTCTC	2 cut(s)	14, 578
BfmI	CTRYAG	1 cut(s)	725
BisI	GCNGC	9 cut(s)	150, 153, 321, 345, 486, 489, 494, 531, 597
BlsI	GCNGC	9 cut(s)	151, 154, 322, 346, 487, 490, 495, 532, 598
Bme1390I	CCNGG	3 cut(s)	83, 84, 232
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	80, 228
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	3 cut(s)	83, 84, 232
BmrI	ACTGGG	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	52
BpuMI	CCSGG	3 cut(s)	83, 84, 232
BsaAI	YACGTR	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	82, 540
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse118I	RCCGGY	2 cut(s)	329, 347
Bse1I	ACTGG	3 cut(s)	82, 117, 230
Bse8I	GATNNNNATC	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	82, 540
BseGI	GGATG	3 cut(s)	63, 161, 354
BseJI	GATNNNNATC	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	3 cut(s)	82, 117, 230
BseRI	GAGGAG	2 cut(s)	596, 629
BseSI	GKGCMC	1 cut(s)	38
Bsh1236I	CGCG	7 cut(s)	364, 431, 458, 493, 498, 578, 663
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	5 cut(s)	81, 230, 287, 333, 539
BshNI	GGYRCC	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	38, 258
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
BslFI	GGGAC	1 cut(s)	654
BsmAI	GTCTC	2 cut(s)	14, 578
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	5 cut(s)	81, 230, 287, 333, 539
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	38, 258
Bsp143I	GATC	4 cut(s)	177, 217, 479, 716
BspANI	GGCC	5 cut(s)	81, 230, 287, 333, 539
BspCNI	CTCAG	1 cut(s)	667
BspFNI	CGCG	7 cut(s)	364, 431, 458, 493, 498, 578, 663
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	487, 711
BspT107I	GGYRCC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	515
BsrFI	RCCGGY	2 cut(s)	329, 347
BsrI	ACTGG	3 cut(s)	82, 117, 230
BssAI	RCCGGY	2 cut(s)	329, 347
BssECI	CCNNGG	2 cut(s)	82, 540
BssMI	GATC	4 cut(s)	177, 217, 479, 716
Bst4CI	ACNGT	2 cut(s)	142, 710
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	254, 349
BstDEI	CTNAG	3 cut(s)	24, 509, 654
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	63, 161, 354
BstFNI	CGCG	7 cut(s)	364, 431, 458, 493, 498, 578, 663
BstHHI	GCGC	6 cut(s)	364, 433, 460, 493, 498, 578
BstKTI	GATC	4 cut(s)	180, 220, 482, 719
BstMAI	GTCTC	2 cut(s)	14, 578
BstMBI	GATC	4 cut(s)	177, 217, 479, 716
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 536
BstSCI	CCNGG	3 cut(s)	81, 82, 230
BstSFI	CTRYAG	1 cut(s)	725
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	7 cut(s)	364, 431, 458, 493, 498, 578, 663
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BsuRI	GGCC	5 cut(s)	81, 230, 287, 333, 539
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	2 cut(s)	301, 412
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	63, 161, 354
Cac8I	GCNNGC	2 cut(s)	254, 349
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	6 cut(s)	364, 433, 460, 493, 498, 578
Cfr10I	RCCGGY	2 cut(s)	329, 347
Cfr13I	GGNCC	2 cut(s)	80, 228
Cfr9I	CCCGGG	1 cut(s)	82
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	649, 711
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	2 cut(s)	649, 711
DdeI	CTNAG	3 cut(s)	24, 509, 654
DpnI	GATC	4 cut(s)	179, 219, 481, 718
DpnII	GATC	4 cut(s)	177, 217, 479, 716
DraI	TTTAAA	1 cut(s)	135
DriI	GACNNNNNGTC	1 cut(s)	673
EaeI	YGGCCR	3 cut(s)	285, 331, 537
Eam1105I	GACNNNNNGTC	1 cut(s)	673
EciI	GGCGGA	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	256
Eco72I	CACGTG	1 cut(s)	646
Eco88I	CYCGRG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	1 cut(s)	262
FaiI	YATR	4 cut(s)	93, 260, 411, 413
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	9 cut(s)	150, 153, 321, 345, 486, 489, 494, 531, 597
FokI	GGATG	3 cut(s)	50, 148, 341
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	9 cut(s)	150, 153, 321, 345, 486, 489, 494, 531, 597
GlaI	GCGC	6 cut(s)	363, 432, 459, 492, 497, 577
GluI	GCNGC	9 cut(s)	150, 153, 321, 345, 486, 489, 494, 531, 597
HaeIII	GGCC	5 cut(s)	81, 230, 287, 333, 539
HapII	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	6 cut(s)	364, 433, 460, 493, 498, 578
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	6 cut(s)	362, 431, 458, 491, 496, 576
HinP1I	GCGC	6 cut(s)	362, 431, 458, 491, 496, 576
HincII	GTYRAC	2 cut(s)	559, 667
HindII	GTYRAC	2 cut(s)	559, 667
HinfI	GANTC	3 cut(s)	439, 560, 658
HpaII	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
HphI	GGTGA	5 cut(s)	61, 98, 172, 319, 448
Hpy166II	GTNNAC	4 cut(s)	36, 559, 649, 667
Hpy188I	TCNGA	7 cut(s)	146, 238, 384, 479, 657, 679, 698
Hpy188III	TCNNGA	2 cut(s)	221, 259
Hpy8I	GTNNAC	4 cut(s)	36, 559, 649, 667
HpyAV	CCTTC	3 cut(s)	385, 541, 631
HpyCH4III	ACNGT	2 cut(s)	142, 710
HpyCH4IV	ACGT	4 cut(s)	38, 158, 378, 645
HpyCH4V	TGCA	2 cut(s)	4, 36
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 536
HpyF3I	CTNAG	3 cut(s)	24, 509, 654
HpySE526I	ACGT	4 cut(s)	38, 158, 378, 645
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	6 cut(s)	362, 431, 458, 491, 496, 576
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	177, 217, 479, 716
LmnI	GCTCC	1 cut(s)	276
MaeII	ACGT	4 cut(s)	38, 158, 378, 645
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	179, 219, 481, 718
MbiI	CCGCTC	1 cut(s)	515
MboI	GATC	4 cut(s)	177, 217, 479, 716
MboII	GAAGA	2 cut(s)	52, 193
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	2 cut(s)	38, 258
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	5 cut(s)	21, 216, 231, 457, 657
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	347
MseI	TTAA	3 cut(s)	134, 465, 570
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	6 cut(s)	83, 231, 274, 330, 348, 443
MspR9I	CCNGG	3 cut(s)	83, 84, 232
MteI	GCGCNGCGC	1 cut(s)	494
MvnI	CGCG	7 cut(s)	364, 431, 458, 493, 498, 578, 663
MwoI	GCNNNNNNNGC	2 cut(s)	344, 536
NaeI	GCCGGC	1 cut(s)	349
NciI	CCSGG	3 cut(s)	83, 84, 232
NdeII	GATC	4 cut(s)	177, 217, 479, 716
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	368
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	439, 658
PkrI	GCNGC	9 cut(s)	151, 154, 322, 346, 487, 490, 495, 532, 598
PleI	GAGTC	1 cut(s)	554
PmaCI	CACGTG	1 cut(s)	646
PmlI	CACGTG	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	258
PspCI	CACGTG	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	80, 228
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	2 cut(s)	650, 712
RsaNI	GTAC	2 cut(s)	649, 711
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	134, 465, 570
SatI	GCNGC	9 cut(s)	150, 153, 321, 345, 486, 489, 494, 531, 597
Sau3AI	GATC	4 cut(s)	177, 217, 479, 716
Sau96I	GGNCC	2 cut(s)	80, 228
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	3 cut(s)	83, 84, 232
SduI	GDGCHC	2 cut(s)	38, 258
SfcI	CTRYAG	1 cut(s)	725
SmaI	CCCGGG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	81, 82, 230
TaaI	ACNGT	2 cut(s)	142, 710
TaiI	ACGT	4 cut(s)	41, 161, 381, 648
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	197
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	9 cut(s)	152, 155, 323, 347, 488, 491, 496, 533, 599
TfiI	GAWTC	2 cut(s)	439, 658
Tru1I	TTAA	3 cut(s)	134, 465, 570
Tru9I	TTAA	3 cut(s)	134, 465, 570
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	52, 275, 283, 343
TspGWI	ACGGA	1 cut(s)	157
TspMI	CCCGGG	1 cut(s)	82
VneI	GTGCAC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	197
XmaI	CCCGGG	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.