Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

56928546 .. 56929634

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTCTCAAGCCACACCTATATATATATATCATCGATGATAACGAAATTCCAATGCATTGTGAAAAGTGTGAGACTAAGAAAATGTGCACGTTGGACAAGAAAGGCGAGGTCTTCATCCTCACCCTAACTGGCCCGGGTGAGCATAGGCTCAACCCAACTCTACTGGACGCAATCCAATCCGCTTTAAACACAGTCCGAGCCGCCGCCACGTCATCCTCCGTAGCCCTGATCACCACCGCACACGGCAAATTCTTCTCCAACGGCTACGATCTGGACTGGGCCGGGTCGGACAAAGCCCGAAGCGAGCTCATGAACTCGAAGCTCCGGTCGGTAGTGGCCGACTTCATCTCCCTCCCGTTGCCGACCATCGCCGCCGTCACCGGCCACGCCTCAGCCGCCGGATTCATCCTTGCGCGGTGCCACGACTACGTTCTGATGAGGAAGGACAGGGGGTTCGTCTATATGAGCGAGATGGACATCGCGCTGGTGATTCCGGCTTGGTTTCAAGCGCTGATTAAAAACAAGGTCGGATCGGCGGCGGCGCGGCGCGATTTGATGCTCAGAGCGGATAAGATGACGGCGGCGGCGGCCGTGGAGAAGGGGATTGTTGACTCGGCGGTTAATGGCGCGGAGGAGACCGTTGAGGCGGCGGTTAGATTGGGGGAGGAGTTGGTTAGGAGGAAATGGAAGGGACACGTGTACGCTCAGATTCGCGTTGACTTGATGTCGGAGGTTTTGGAGGAAATCCGAAACCATGACAGTACAAGATCCCGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

260

Amino Acids

28.67

Weight (kDa)

7.72

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	35 - 229	7.2e-24	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	569
AccII	CGCG	6 cut(s)	418, 485, 547, 552, 632, 717
AclWI	GGATC	2 cut(s)	541, 765
AcoI	YGGCCR	3 cut(s)	339, 385, 591
AcsI	RAATTY	2 cut(s)	48, 251
AcvI	CACGTG	1 cut(s)	700
AfaI	GTAC	2 cut(s)	704, 766
AfeI	AGCGCT	1 cut(s)	513
AflIII	ACRYGT	2 cut(s)	697, 699
AgsI	TTSAA	1 cut(s)	509
AhdI	GACNNNNNGTC	1 cut(s)	727
AjiI	CACGTC	1 cut(s)	213
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	310, 325
AluI	AGCT	2 cut(s)	310, 325
Alw21I	GWGCWC	2 cut(s)	92, 312
Alw26I	GTCTC	2 cut(s)	68, 632
Alw44I	GTGCAC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	541, 765
Ama87I	CYCGRG	1 cut(s)	136
Aor51HI	AGCGCT	1 cut(s)	513
AoxI	GGCC	5 cut(s)	133, 282, 339, 385, 591
ApaLI	GTGCAC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	48, 251
ArsI	GACNNNNNNTTYG	4 cut(s)	314, 346, 440, 472
AspLEI	GCGC	6 cut(s)	418, 487, 514, 547, 552, 632
AspS9I	GGNCC	2 cut(s)	134, 282
AsuC2I	CCSGG	3 cut(s)	137, 138, 286
AsuHPI	GGTGA	5 cut(s)	115, 152, 226, 373, 502
AvaI	CYCGRG	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	92, 312
BbvCI	CCTCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	377, 469
BceAI	ACGGC	5 cut(s)	262, 280, 362, 578, 597
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	3 cut(s)	137, 138, 286
BcoDI	GTCTC	2 cut(s)	68, 632
BfmI	CTRYAG	1 cut(s)	779
BfoI	RGCGCY	1 cut(s)	515
Bme1390I	CCNGG	3 cut(s)	137, 138, 286
BmeRI	GACNNNNNGTC	1 cut(s)	727
BmeT110I	CYCGRG	1 cut(s)	136
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	134, 282
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	3 cut(s)	137, 138, 286
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	549
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	394
BpuMI	CCSGG	3 cut(s)	137, 138, 286
Bsa29I	ATCGAT	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	2 cut(s)	136, 594
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	136, 171, 284
Bse8I	GATNNNNATC	1 cut(s)	479
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	136, 594
BseGI	GGATG	3 cut(s)	117, 215, 408
BseJI	GATNNNNATC	1 cut(s)	479
BseMII	CTCAG	3 cut(s)	408, 577, 722
BseNI	ACTGG	3 cut(s)	136, 171, 284
BseRI	GAGGAG	2 cut(s)	650, 683
BseSI	GKGCMC	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	591
Bsh1236I	CGCG	6 cut(s)	418, 485, 547, 552, 632, 717
Bsh1285I	CGRYCG	2 cut(s)	332, 594
BshFI	GGCC	5 cut(s)	135, 284, 341, 387, 593
BshNI	GGYRCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	36
BsiEI	CGRYCG	2 cut(s)	332, 594
BsiHKAI	GWGCWC	2 cut(s)	92, 312
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	6 cut(s)	137, 285, 328, 384, 402, 497
BslFI	GGGAC	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	68, 632
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	5 cut(s)	135, 284, 341, 387, 593
Bso31I	GGTCTC	1 cut(s)	632
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	92, 312
Bsp143I	GATC	4 cut(s)	231, 271, 533, 770
BspANI	GGCC	5 cut(s)	135, 284, 341, 387, 593
BspCNI	CTCAG	3 cut(s)	407, 576, 721
BspDI	ATCGAT	1 cut(s)	36
BspFNI	CGCG	6 cut(s)	418, 485, 547, 552, 632, 717
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	541, 765
BspT107I	GGYRCC	1 cut(s)	420
BspTNI	GGTCTC	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	3 cut(s)	136, 171, 284
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	136, 594
BssMI	GATC	4 cut(s)	231, 271, 533, 770
Bst4CI	ACNGT	3 cut(s)	196, 643, 764
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	78, 394, 563, 708
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	117, 215, 408
BstFNI	CGCG	6 cut(s)	418, 485, 547, 552, 632, 717
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	6 cut(s)	418, 487, 514, 547, 552, 632
BstKTI	GATC	4 cut(s)	234, 274, 536, 773
BstMAI	GTCTC	2 cut(s)	68, 632
BstMBI	GATC	4 cut(s)	231, 271, 533, 770
BstMCI	CGRYCG	2 cut(s)	332, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 590
BstSCI	CCNGG	3 cut(s)	135, 136, 284
BstSFI	CTRYAG	1 cut(s)	779
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	6 cut(s)	418, 485, 547, 552, 632, 717
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	770
BstZI	CGGCCG	1 cut(s)	591
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	5 cut(s)	135, 284, 341, 387, 593
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	594
BtgZI	GCGATG	2 cut(s)	355, 466
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	117, 215, 408
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	6 cut(s)	418, 487, 514, 547, 552, 632
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	134, 282
Cfr9I	CCCGGG	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	703, 765
CviAII	CATG	2 cut(s)	313, 758
CviQI	GTAC	2 cut(s)	703, 765
DdeI	CTNAG	4 cut(s)	78, 394, 563, 708
DpnI	GATC	4 cut(s)	233, 273, 535, 772
DpnII	GATC	4 cut(s)	231, 271, 533, 770
DraI	TTTAAA	1 cut(s)	189
DriI	GACNNNNNGTC	1 cut(s)	727
EaeI	YGGCCR	3 cut(s)	339, 385, 591
EagI	CGGCCG	1 cut(s)	591
Eam1105I	GACNNNNNGTC	1 cut(s)	727
Ecl136II	GAGCTC	1 cut(s)	310
EclXI	CGGCCG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	632
Eco47III	AGCGCT	1 cut(s)	513
Eco52I	CGGCCG	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	700
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	312
FaeI	CATG	2 cut(s)	316, 761
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	2 cut(s)	312, 757
FbaI	TGATCA	1 cut(s)	231
FokI	GGATG	3 cut(s)	104, 202, 395
FriOI	GRGCYC	1 cut(s)	312
GlaI	GCGC	6 cut(s)	417, 486, 513, 546, 551, 631
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	5 cut(s)	135, 284, 341, 387, 593
HapII	CCGG	6 cut(s)	137, 285, 328, 384, 402, 497
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	6 cut(s)	418, 487, 514, 547, 552, 632
Hin1II	CATG	2 cut(s)	316, 761
Hin6I	GCGC	6 cut(s)	416, 485, 512, 545, 550, 630
HinP1I	GCGC	6 cut(s)	416, 485, 512, 545, 550, 630
HincII	GTYRAC	2 cut(s)	613, 721
HindII	GTYRAC	2 cut(s)	613, 721
HinfI	GANTC	4 cut(s)	405, 493, 614, 712
HpaII	CCGG	6 cut(s)	137, 285, 328, 384, 402, 497
HphI	GGTGA	5 cut(s)	115, 152, 226, 373, 502
Hpy166II	GTNNAC	4 cut(s)	90, 613, 703, 721
Hpy188I	TCNGA	8 cut(s)	200, 292, 438, 533, 566, 711, 733, 752
Hpy188III	TCNNGA	2 cut(s)	275, 313
Hpy8I	GTNNAC	4 cut(s)	90, 613, 703, 721
HpyAV	CCTTC	3 cut(s)	439, 595, 685
HpyCH4III	ACNGT	3 cut(s)	196, 643, 764
HpyCH4IV	ACGT	4 cut(s)	92, 212, 432, 699
HpyCH4V	TGCA	2 cut(s)	58, 90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 590
HpyF3I	CTNAG	4 cut(s)	78, 394, 563, 708
HpySE526I	ACGT	4 cut(s)	92, 212, 432, 699
Hsp92II	CATG	2 cut(s)	316, 761
HspAI	GCGC	6 cut(s)	416, 485, 512, 545, 550, 630
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	231, 271, 533, 770
LmnI	GCTCC	1 cut(s)	330
LweI	GCATC	1 cut(s)	549
MaeII	ACGT	4 cut(s)	92, 212, 432, 699
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	4 cut(s)	233, 273, 535, 772
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	4 cut(s)	231, 271, 533, 770
MboII	GAAGA	2 cut(s)	106, 247
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	2 cut(s)	92, 312
MluCI	AATT	2 cut(s)	48, 251
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	5 cut(s)	75, 270, 285, 511, 711
Mph1103I	ATGCAT	1 cut(s)	60
MseI	TTAA	3 cut(s)	188, 519, 624
MspI	CCGG	6 cut(s)	137, 285, 328, 384, 402, 497
MspR9I	CCNGG	3 cut(s)	137, 138, 286
MteI	GCGCNGCGC	1 cut(s)	548
MvnI	CGCG	6 cut(s)	418, 485, 547, 552, 632, 717
MwoI	GCNNNNNNNGC	2 cut(s)	398, 590
NciI	CCSGG	3 cut(s)	137, 138, 286
NdeII	GATC	4 cut(s)	231, 271, 533, 770
NlaIII	CATG	2 cut(s)	316, 761
NlaIV	GGNNCC	1 cut(s)	422
NmeAIII	GCCGAG	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	60
PagI	TCATGA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	405, 493, 712
PleI	GAGTC	1 cut(s)	608
PmaCI	CACGTG	1 cut(s)	700
PmlI	CACGTG	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	608
Ppu21I	YACGTR	1 cut(s)	700
Psp124BI	GAGCTC	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	700
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	2 cut(s)	134, 282
PsuI	RGATCY	1 cut(s)	770
RsaI	GTAC	2 cut(s)	704, 766
RsaNI	GTAC	2 cut(s)	703, 765
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	188, 519, 624
Sau3AI	GATC	4 cut(s)	231, 271, 533, 770
Sau96I	GGNCC	2 cut(s)	134, 282
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	137, 138, 286
SduI	GDGCHC	2 cut(s)	92, 312
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	1 cut(s)	779
SmaI	CCCGGG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	48, 251
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	135, 136, 284
TaaI	ACNGT	3 cut(s)	196, 643, 764
TaiI	ACGT	4 cut(s)	95, 215, 435, 702
TaqI	TCGA	2 cut(s)	36, 320
TasI	AATT	2 cut(s)	48, 251
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	405, 493, 712
Tru1I	TTAA	3 cut(s)	188, 519, 624
Tru9I	TTAA	3 cut(s)	188, 519, 624
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	106, 329, 337, 397
TspGWI	ACGGA	1 cut(s)	211
TspMI	CCCGGG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	88
XapI	RAATTY	2 cut(s)	48, 251
XmaI	CCCGGG	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.