Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

23719050 .. 23719766

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1124100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTGCACATTAGAGAGGAAAGGCAACGTCTTCATCCTAACGCTAACAGGCCCAGGCGAGCACAGACTCAATCCCACTCTCATCGACTCAATCCGGTCCGCCCTCAACCAAATCCGAACCGCCGTTACCACCACCGCCACGTCATCATCACCCTCAGCCCTAATCACCACCGCGCATGGCAAATTCTTCTCCAACGGCTACGATCTCTCCTGGGCCAAGTCCTCCGAGTCCCGGTTGGAGCTCATACGCTCCAAGGTCCGGTCCCTCGTCGCCGACCTCATCTCCCTCCCCATGCCCACCGTCGCCGCTGTTTCCGGCCACGCTTCCGCCGCCGGATTCATTCTCGCTCGCAGCCACGACTACCTCCTCATGAGGCGAGACCGCGGCTTCATCTACATGAGTGAGCTCGACATCGAGCTCCTTCTCCCGGCTTGGTTAGTGGCGCTGTTCGATCGCAAAATCAGCTCACCGGCGGCTCGGCGCGATTTGTTGCTGAGAGCCGATAAGATGACGGCGGACGTGGCAGTGGCGAAGGGGATAATCGACTCGGCGCACGATAGCGCGGAGGAGACGGTCGAGGCCGCGGTTAGACTTGGAGAGGGGTTGGTATCGCGGAAATGGAACGGACACGTGTACGCTCAGATTCGCAAGGACTTGTTGTCTGAAGTACTGGATGATATCCGCGTGAATAATACCGGCAGTAGAGCGCGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

239

Amino Acids

26.06

Weight (kDa)

9.33

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	6 - 205	8.2e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	8 cut(s)	173, 384, 483, 563, 584, 613, 684, 709
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	684
AcvI	CACGTG	1 cut(s)	631
AfaI	GTAC	2 cut(s)	635, 669
AfiI	CCNNNNNNNGG	3 cut(s)	231, 258, 427
AflIII	ACRYGT	2 cut(s)	628, 630
AhdI	GACNNNNNGTC	1 cut(s)	658
AjiI	CACGTC	2 cut(s)	141, 520
AjnI	CCWGG	2 cut(s)	52, 209
AluBI	AGCT	4 cut(s)	241, 406, 418, 465
AluI	AGCT	4 cut(s)	241, 406, 418, 465
Alw21I	GWGCWC	5 cut(s)	8, 63, 243, 408, 420
Alw26I	GTCTC	2 cut(s)	372, 563
Alw44I	GTGCAC	1 cut(s)	4
AoxI	GGCC	4 cut(s)	49, 213, 316, 579
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	351
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	6 cut(s)	175, 445, 483, 553, 563, 709
AspS9I	GGNCC	5 cut(s)	50, 96, 213, 256, 261
AsuC2I	CCSGG	2 cut(s)	232, 428
AsuHPI	GGTGA	3 cut(s)	141, 157, 459
AvaII	GGWCC	3 cut(s)	96, 256, 261
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	3 cut(s)	243, 408, 420
BbrPI	CACGTG	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	5 cut(s)	8, 63, 243, 408, 420
BbvCI	CCTCAGC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	363
BceAI	ACGGC	3 cut(s)	107, 211, 528
BciT130I	CCWGG	2 cut(s)	54, 211
BcnI	CCSGG	2 cut(s)	232, 428
BcoDI	GTCTC	2 cut(s)	372, 563
BfmI	CTRYAG	1 cut(s)	713
BfoI	RGCGCY	1 cut(s)	446
BisI	GCNGC	7 cut(s)	306, 330, 352, 385, 474, 582, 710
BlsI	GCNGC	7 cut(s)	307, 331, 353, 386, 475, 583, 711
BmcAI	AGTACT	1 cut(s)	669
Bme1390I	CCNGG	4 cut(s)	54, 211, 232, 428
Bme18I	GGWCC	3 cut(s)	96, 256, 261
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmgBI	CACGTC	2 cut(s)	141, 520
BmgT120I	GGNCC	5 cut(s)	50, 96, 213, 256, 261
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	4 cut(s)	54, 211, 232, 428
BpiI	GAAGAC	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	154
BpuMI	CCSGG	2 cut(s)	232, 428
BsaAI	YACGTR	1 cut(s)	631
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	5 cut(s)	52, 210, 252, 382, 582
BsaWI	WCCGGW	2 cut(s)	93, 258
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 266, 296
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 258, 427
Bse118I	RCCGGY	2 cut(s)	469, 695
Bse1I	ACTGG	1 cut(s)	675
BseBI	CCWGG	2 cut(s)	54, 211
BseDI	CCNNGG	5 cut(s)	52, 210, 252, 382, 582
BseGI	GGATG	2 cut(s)	33, 679
BseLI	CCNNNNNNNGG	3 cut(s)	231, 258, 427
BseMII	CTCAG	3 cut(s)	168, 485, 653
BseNI	ACTGG	1 cut(s)	675
BseRI	GAGGAG	2 cut(s)	356, 581
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	363
Bsh1236I	CGCG	8 cut(s)	173, 384, 483, 563, 584, 613, 684, 709
Bsh1285I	CGRYCG	2 cut(s)	454, 576
BshFI	GGCC	4 cut(s)	51, 215, 318, 581
BsiEI	CGRYCG	2 cut(s)	454, 576
BsiHKAI	GWGCWC	5 cut(s)	8, 63, 243, 408, 420
BsiSI	CCGG	8 cut(s)	94, 232, 259, 315, 333, 428, 470, 696
BslFI	GGGAC	2 cut(s)	214, 247
BslI	CCNNNNNNNGG	3 cut(s)	231, 258, 427
BsmAI	GTCTC	2 cut(s)	372, 563
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	2 cut(s)	214, 247
BsnI	GGCC	4 cut(s)	51, 215, 318, 581
Bso31I	GGTCTC	1 cut(s)	372
Bsp1286I	GDGCHC	5 cut(s)	8, 63, 243, 408, 420
Bsp143I	GATC	2 cut(s)	202, 451
BspANI	GGCC	4 cut(s)	51, 215, 318, 581
BspCNI	CTCAG	3 cut(s)	167, 486, 652
BspFNI	CGCG	8 cut(s)	173, 384, 483, 563, 584, 613, 684, 709
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	372
BsrFI	RCCGGY	2 cut(s)	469, 695
BsrI	ACTGG	1 cut(s)	675
BssAI	RCCGGY	2 cut(s)	469, 695
BssECI	CCNNGG	5 cut(s)	52, 210, 252, 382, 582
BssMI	GATC	2 cut(s)	202, 451
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	54, 211
Bst4CI	ACNGT	2 cut(s)	301, 574
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	2 cut(s)	59, 349
BstDEI	CTNAG	3 cut(s)	154, 494, 639
BstDSI	CCRYGG	2 cut(s)	382, 582
BstF5I	GGATG	2 cut(s)	33, 679
BstFNI	CGCG	8 cut(s)	173, 384, 483, 563, 584, 613, 684, 709
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	6 cut(s)	175, 445, 483, 553, 563, 709
BstKTI	GATC	2 cut(s)	205, 454
BstMAI	GTCTC	2 cut(s)	372, 563
BstMBI	GATC	2 cut(s)	202, 451
BstMCI	CGRYCG	2 cut(s)	454, 576
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 462, 521
BstNI	CCWGG	2 cut(s)	54, 211
BstSCI	CCNGG	4 cut(s)	52, 209, 230, 426
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	8 cut(s)	173, 384, 483, 563, 584, 613, 684, 709
BstV1I	GCAGC	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	51, 215, 318, 581
BtgI	CCRYGG	2 cut(s)	382, 582
BtrI	CACGTC	2 cut(s)	141, 520
BtsCI	GGATG	2 cut(s)	33, 679
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	59, 349
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	6 cut(s)	175, 445, 483, 553, 563, 709
Cfr10I	RCCGGY	2 cut(s)	469, 695
Cfr13I	GGNCC	5 cut(s)	50, 96, 213, 256, 261
Cfr42I	CCGCGG	2 cut(s)	385, 585
CpoI	CGGWCCG	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	634, 668
CspI	CGGWCCG	1 cut(s)	96
CviAII	CATG	4 cut(s)	176, 292, 370, 397
CviQI	GTAC	2 cut(s)	634, 668
DdeI	CTNAG	3 cut(s)	154, 494, 639
DpnI	GATC	2 cut(s)	204, 453
DpnII	GATC	2 cut(s)	202, 451
DriI	GACNNNNNGTC	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	316
Eam1105I	GACNNNNNGTC	1 cut(s)	658
EciI	GGCGGA	3 cut(s)	88, 316, 530
Ecl136II	GAGCTC	3 cut(s)	241, 406, 418
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	243, 408, 420
Eco31I	GGTCTC	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	3 cut(s)	96, 256, 261
Eco53kI	GAGCTC	3 cut(s)	241, 406, 418
Eco57I	CTGAAG	1 cut(s)	684
Eco72I	CACGTG	1 cut(s)	631
EcoICRI	GAGCTC	3 cut(s)	241, 406, 418
EcoRII	CCWGG	2 cut(s)	52, 209
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	3 cut(s)	243, 408, 420
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	4 cut(s)	179, 295, 373, 400
FaiI	YATR	5 cut(s)	177, 245, 293, 371, 398
FaqI	GGGAC	2 cut(s)	214, 247
FatI	CATG	4 cut(s)	175, 291, 369, 396
Fnu4HI	GCNGC	7 cut(s)	306, 330, 352, 385, 474, 582, 710
FokI	GGATG	2 cut(s)	20, 686
FriOI	GRGCYC	3 cut(s)	243, 408, 420
Fsp4HI	GCNGC	7 cut(s)	306, 330, 352, 385, 474, 582, 710
GlaI	GCGC	6 cut(s)	174, 444, 482, 552, 562, 708
GluI	GCNGC	7 cut(s)	306, 330, 352, 385, 474, 582, 710
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	4 cut(s)	51, 215, 318, 581
HapII	CCGG	8 cut(s)	94, 232, 259, 315, 333, 428, 470, 696
HhaI	GCGC	6 cut(s)	175, 445, 483, 553, 563, 709
Hin1II	CATG	4 cut(s)	179, 295, 373, 400
Hin6I	GCGC	6 cut(s)	173, 443, 481, 551, 561, 707
HinP1I	GCGC	6 cut(s)	173, 443, 481, 551, 561, 707
HinfI	GANTC	6 cut(s)	66, 86, 227, 336, 545, 643
HpaII	CCGG	8 cut(s)	94, 232, 259, 315, 333, 428, 470, 696
HphI	GGTGA	3 cut(s)	141, 157, 459
Hpy166II	GTNNAC	2 cut(s)	6, 634
Hpy188I	TCNGA	4 cut(s)	116, 226, 642, 664
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	6, 634
Hpy99I	CGWCG	2 cut(s)	272, 305
HpyAV	CCTTC	2 cut(s)	431, 526
HpyCH4III	ACNGT	2 cut(s)	301, 574
HpyCH4IV	ACGT	4 cut(s)	27, 140, 519, 630
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 462, 521
HpyF3I	CTNAG	3 cut(s)	154, 494, 639
HpySE526I	ACGT	4 cut(s)	27, 140, 519, 630
Hsp92II	CATG	4 cut(s)	179, 295, 373, 400
HspAI	GCGC	6 cut(s)	173, 443, 481, 551, 561, 707
KspI	CCGCGG	2 cut(s)	385, 585
Kzo9I	GATC	2 cut(s)	202, 451
LmnI	GCTCC	3 cut(s)	238, 254, 423
Lsp1109I	GCAGC	1 cut(s)	363
MaeII	ACGT	4 cut(s)	27, 140, 519, 630
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	204, 453
MboI	GATC	2 cut(s)	202, 451
MboII	GAAGA	2 cut(s)	22, 178
MhlI	GDGCHC	5 cut(s)	8, 63, 243, 408, 420
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	4 cut(s)	60, 80, 236, 539
MmeI	TCCRAC	2 cut(s)	216, 216
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	3 cut(s)	308, 384, 584
MspI	CCGG	8 cut(s)	94, 232, 259, 315, 333, 428, 470, 696
MspR9I	CCNGG	4 cut(s)	54, 211, 232, 428
MvaI	CCWGG	2 cut(s)	54, 211
MvnI	CGCG	8 cut(s)	173, 384, 483, 563, 584, 613, 684, 709
MwoI	GCNNNNNNNGC	3 cut(s)	329, 462, 521
NciI	CCSGG	2 cut(s)	232, 428
NdeII	GATC	2 cut(s)	202, 451
NlaIII	CATG	4 cut(s)	179, 295, 373, 400
NlaIV	GGNNCC	1 cut(s)	263
NmeAIII	GCCGAG	2 cut(s)	457, 527
PagI	TCATGA	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	336, 643
PkrI	GCNGC	7 cut(s)	307, 331, 353, 386, 475, 583, 711
Ple19I	CGATCG	1 cut(s)	454
PleI	GAGTC	4 cut(s)	60, 80, 235, 539
PmaCI	CACGTG	1 cut(s)	631
PmlI	CACGTG	1 cut(s)	631
PpsI	GAGTC	4 cut(s)	60, 80, 235, 539
Ppu21I	YACGTR	1 cut(s)	631
Psp124BI	GAGCTC	3 cut(s)	243, 408, 420
Psp6I	CCWGG	2 cut(s)	52, 209
PspCI	CACGTG	1 cut(s)	631
PspGI	CCWGG	2 cut(s)	52, 209
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	5 cut(s)	50, 96, 213, 256, 261
PsrI	GAACNNNNNNTAC	2 cut(s)	109, 141
PvuI	CGATCG	1 cut(s)	454
RsaI	GTAC	2 cut(s)	635, 669
RsaNI	GTAC	2 cut(s)	634, 668
RseI	CAYNNNNRTG	1 cut(s)	395
Rsr2I	CGGWCCG	1 cut(s)	96
RsrII	CGGWCCG	1 cut(s)	96
SacI	GAGCTC	3 cut(s)	243, 408, 420
SacII	CCGCGG	2 cut(s)	385, 585
SatI	GCNGC	7 cut(s)	306, 330, 352, 385, 474, 582, 710
Sau3AI	GATC	2 cut(s)	202, 451
Sau96I	GGNCC	5 cut(s)	50, 96, 213, 256, 261
ScaI	AGTACT	1 cut(s)	669
SchI	GAGTC	4 cut(s)	60, 80, 236, 539
ScrFI	CCNGG	4 cut(s)	54, 211, 232, 428
SduI	GDGCHC	5 cut(s)	8, 63, 243, 408, 420
SfcI	CTRYAG	1 cut(s)	713
Sfr303I	CCGCGG	2 cut(s)	385, 585
SgrAI	CRCCGGYG	1 cut(s)	469
SgrBI	CCGCGG	2 cut(s)	385, 585
SinI	GGWCC	3 cut(s)	96, 256, 261
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	182
SstI	GAGCTC	3 cut(s)	243, 408, 420
StyD4I	CCNGG	4 cut(s)	52, 209, 230, 426
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	301, 574
TaiI	ACGT	4 cut(s)	30, 143, 522, 633
TaqI	TCGA	6 cut(s)	84, 408, 414, 450, 543, 576
TasI	AATT	1 cut(s)	182
TatI	WGTACW	1 cut(s)	667
TauI	GCSGC	6 cut(s)	308, 332, 387, 476, 584, 712
TfiI	GAWTC	2 cut(s)	336, 643
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	1 cut(s)	351
TspDTI	ATGAA	3 cut(s)	22, 328, 379
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	1 cut(s)	531
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	3 cut(s)	96, 256, 261
XapI	RAATTY	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.