Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

15076566 .. 15077282

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTGTACGTTAGAGAGGAAAGGCAACATCTTCATCCTAACGCTAACAGGCCCAGGAGAGCACAGGCTCAACCCCACTCTCATCGACTCAATCCGATCCGCTCTCAACCAAGTCCGAGCCGCCGTCACCACCACCGCCACGTCATCATCTCCCTCAGCCCTAATCACCACCGCACATGGCAAATTCTTCTCCAACGGCTACGATCTCTCTTGGGCCCAGTCCTCTCAATCCCGCAGAGAGCTCATGGACGCCAAGCTCCAGTCCCTTGTCGCCGATCTCATCTCCCTCCCGATGCCCACCATCGCCGCCGTCTCCGGCCCCGCCTCCGCCGCCGGCTTCATCATCGCTCTCAGCCACGACTACCTTCTCATGAGGAGGGACCGCGGCTTCATCTACATGAGCGAGCTCGACATCGAGCTTATTCTGCCACGCTGGTTCTTGGCACTGATCGAGAGCAAGGTCGGCTCGCCGGCGGCTCGGCGTGACTTGTTGCTCAGAGCCGATAAGGTGAAAGCCGACGTGGCAGTGGCGAAGGGGATTATCTACTCGGCGCACGATAGCGCGGAGGAGACCGTCGAGGCCGCGGCTAATTTGGGAGAGGAGTTGGTTCGGCGGAAGTGGAACGGACACGTGTACGCTCATATTCGGAAGGATATGTTGTCTGATGTTCTGGATGTGATCCGCGGAAATACTACTAGCAGAAAATCACGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

239

Amino Acids

26.09

Weight (kDa)

9.26

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	6 - 205	5.2e-18	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	4 cut(s)	384, 563, 584, 684
AclWI	GGATC	2 cut(s)	90, 673
AcsI	RAATTY	1 cut(s)	182
AcvI	CACGTG	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	7, 635
AflIII	ACRYGT	2 cut(s)	628, 630
AjiI	CACGTC	2 cut(s)	141, 520
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	4 cut(s)	241, 256, 406, 418
AluI	AGCT	4 cut(s)	241, 256, 406, 418
Alw21I	GWGCWC	3 cut(s)	63, 243, 408
Alw26I	GTCTC	2 cut(s)	316, 563
AlwI	GGATC	2 cut(s)	90, 673
AoxI	GGCC	4 cut(s)	49, 213, 316, 579
ApaI	GGGCCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	553, 563
AspS9I	GGNCC	5 cut(s)	50, 213, 214, 317, 379
AsuHPI	GGTGA	3 cut(s)	118, 157, 520
AvaII	GGWCC	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	3 cut(s)	217, 243, 408
BbrPI	CACGTG	1 cut(s)	631
Bbv12I	GWGCWC	3 cut(s)	63, 243, 408
BbvCI	CCTCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	3 cut(s)	107, 211, 293
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	316, 563
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	713
BglI	GCCNNNNNGGC	1 cut(s)	521
BisI	GCNGC	7 cut(s)	120, 306, 330, 385, 474, 582, 585
BlsI	GCNGC	7 cut(s)	121, 307, 331, 386, 475, 583, 586
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	379
BmgBI	CACGTC	2 cut(s)	141, 520
BmgT120I	GGNCC	5 cut(s)	50, 213, 214, 317, 379
BmiI	GGNNCC	3 cut(s)	215, 319, 380
BmrFI	CCNGG	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	631
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	4 cut(s)	52, 382, 582, 682
Bse118I	RCCGGY	2 cut(s)	332, 469
Bse1I	ACTGG	2 cut(s)	217, 259
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	4 cut(s)	52, 382, 582, 682
BseGI	GGATG	2 cut(s)	33, 679
BseMII	CTCAG	3 cut(s)	168, 364, 508
BseNI	ACTGG	2 cut(s)	217, 259
BseRI	GAGGAG	3 cut(s)	388, 581, 614
BseSI	GKGCMC	1 cut(s)	217
Bsh1236I	CGCG	4 cut(s)	384, 563, 584, 684
BshFI	GGCC	4 cut(s)	51, 215, 318, 581
BsiHKAI	GWGCWC	3 cut(s)	63, 243, 408
BsiSI	CCGG	3 cut(s)	315, 333, 470
BslFI	GGGAC	2 cut(s)	247, 392
BsmAI	GTCTC	2 cut(s)	316, 563
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	247, 392
BsnI	GGCC	4 cut(s)	51, 215, 318, 581
Bso31I	GGTCTC	1 cut(s)	563
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	4 cut(s)	63, 217, 243, 408
Bsp143I	GATC	5 cut(s)	95, 202, 274, 447, 678
BspANI	GGCC	4 cut(s)	51, 215, 318, 581
BspCNI	CTCAG	3 cut(s)	167, 363, 507
BspFNI	CGCG	4 cut(s)	384, 563, 584, 684
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	215, 319, 380
BspPI	GGATC	2 cut(s)	90, 673
BspTNI	GGTCTC	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	332, 469
BsrI	ACTGG	2 cut(s)	217, 259
BssAI	RCCGGY	2 cut(s)	332, 469
BssECI	CCNNGG	4 cut(s)	52, 382, 582, 682
BssMI	GATC	5 cut(s)	95, 202, 274, 447, 678
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	574, 714
BstACI	GRCGYC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	4 cut(s)	334, 404, 467, 471
BstDEI	CTNAG	3 cut(s)	154, 350, 494
BstDSI	CCRYGG	3 cut(s)	382, 582, 682
BstF5I	GGATG	2 cut(s)	33, 679
BstFNI	CGCG	4 cut(s)	384, 563, 584, 684
BstHHI	GCGC	2 cut(s)	553, 563
BstKTI	GATC	5 cut(s)	98, 205, 277, 450, 681
BstMAI	GTCTC	2 cut(s)	316, 563
BstMBI	GATC	5 cut(s)	95, 202, 274, 447, 678
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 424, 462, 521
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	4 cut(s)	384, 563, 584, 684
BsuRI	GGCC	4 cut(s)	51, 215, 318, 581
BtgI	CCRYGG	3 cut(s)	382, 582, 682
BtgZI	GCGATG	2 cut(s)	286, 328
BtrI	CACGTC	2 cut(s)	141, 520
BtsCI	GGATG	2 cut(s)	33, 679
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	443, 531
Cac8I	GCNNGC	4 cut(s)	334, 404, 467, 471
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	2 cut(s)	553, 563
Cfr10I	RCCGGY	2 cut(s)	332, 469
Cfr13I	GGNCC	5 cut(s)	50, 213, 214, 317, 379
Cfr42I	CCGCGG	3 cut(s)	385, 585, 685
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	6, 634
CviAII	CATG	4 cut(s)	176, 244, 370, 397
CviQI	GTAC	2 cut(s)	6, 634
DdeI	CTNAG	3 cut(s)	154, 350, 494
DpnI	GATC	5 cut(s)	97, 204, 276, 449, 680
DpnII	GATC	5 cut(s)	95, 202, 274, 447, 678
EciI	GGCGGA	2 cut(s)	316, 628
Ecl136II	GAGCTC	2 cut(s)	241, 406
Eco24I	GRGCYC	3 cut(s)	217, 243, 408
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	379
Eco53kI	GAGCTC	2 cut(s)	241, 406
Eco72I	CACGTG	1 cut(s)	631
EcoICRI	GAGCTC	2 cut(s)	241, 406
EcoRII	CCWGG	1 cut(s)	52
EcoT38I	GRGCYC	3 cut(s)	217, 243, 408
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	4 cut(s)	179, 247, 373, 400
FaiI	YATR	6 cut(s)	177, 245, 371, 398, 642, 656
FaqI	GGGAC	2 cut(s)	247, 392
FatI	CATG	4 cut(s)	175, 243, 369, 396
FauI	CCCGC	2 cut(s)	239, 328
Fnu4HI	GCNGC	7 cut(s)	120, 306, 330, 385, 474, 582, 585
FokI	GGATG	2 cut(s)	20, 686
FriOI	GRGCYC	3 cut(s)	217, 243, 408
Fsp4HI	GCNGC	7 cut(s)	120, 306, 330, 385, 474, 582, 585
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	2 cut(s)	552, 562
GluI	GCNGC	7 cut(s)	120, 306, 330, 385, 474, 582, 585
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	51, 215, 318, 581
HapII	CCGG	3 cut(s)	315, 333, 470
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	2 cut(s)	553, 563
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	179, 247, 373, 400
Hin6I	GCGC	2 cut(s)	551, 561
HinP1I	GCGC	2 cut(s)	551, 561
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	3 cut(s)	315, 333, 470
HphI	GGTGA	3 cut(s)	118, 157, 520
Hpy166II	GTNNAC	2 cut(s)	6, 634
Hpy188I	TCNGA	5 cut(s)	95, 116, 497, 648, 664
Hpy188III	TCNNGA	5 cut(s)	289, 370, 451, 671, 708
Hpy8I	GTNNAC	2 cut(s)	6, 634
Hpy99I	CGWCG	2 cut(s)	521, 578
HpyAV	CCTTC	3 cut(s)	374, 526, 643
HpyCH4III	ACNGT	2 cut(s)	574, 714
HpyCH4IV	ACGT	4 cut(s)	8, 140, 519, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 424, 462, 521
HpyF3I	CTNAG	3 cut(s)	154, 350, 494
HpySE526I	ACGT	4 cut(s)	8, 140, 519, 630
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	179, 247, 373, 400
HspAI	GCGC	2 cut(s)	551, 561
KroI	GCCGGC	2 cut(s)	332, 469
KroNI	GCCGGC	2 cut(s)	334, 471
KspI	CCGCGG	3 cut(s)	385, 585, 685
Kzo9I	GATC	5 cut(s)	95, 202, 274, 447, 678
LmnI	GCTCC	1 cut(s)	261
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	4 cut(s)	8, 140, 519, 630
MaeIII	GTNAC	2 cut(s)	124, 482
MalI	GATC	5 cut(s)	97, 204, 276, 449, 680
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	5 cut(s)	95, 202, 274, 447, 678
MboII	GAAGA	2 cut(s)	22, 178
MhlI	GDGCHC	4 cut(s)	63, 217, 243, 408
MluCI	AATT	2 cut(s)	182, 589
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	216
MreI	CGCCGGCG	1 cut(s)	469
MroNI	GCCGGC	2 cut(s)	332, 469
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	3 cut(s)	384, 584, 684
MspI	CCGG	3 cut(s)	315, 333, 470
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	4 cut(s)	384, 563, 584, 684
MwoI	GCNNNNNNNGC	4 cut(s)	329, 424, 462, 521
NaeI	GCCGGC	2 cut(s)	334, 471
NdeII	GATC	5 cut(s)	95, 202, 274, 447, 678
NgoMIV	GCCGGC	2 cut(s)	332, 469
NlaIII	CATG	4 cut(s)	179, 247, 373, 400
NlaIV	GGNNCC	3 cut(s)	215, 319, 380
NmeAIII	GCCGAG	2 cut(s)	457, 527
NmuCI	GTSAC	2 cut(s)	124, 482
PagI	TCATGA	1 cut(s)	369
PdiI	GCCGGC	2 cut(s)	334, 471
PkrI	GCNGC	7 cut(s)	121, 307, 331, 386, 475, 583, 586
PleI	GAGTC	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	631
PmlI	CACGTG	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	631
Psp124BI	GAGCTC	2 cut(s)	243, 408
Psp6I	CCWGG	1 cut(s)	52
PspCI	CACGTG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	215, 319, 380
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	5 cut(s)	50, 213, 214, 317, 379
RsaI	GTAC	2 cut(s)	7, 635
RsaNI	GTAC	2 cut(s)	6, 634
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	2 cut(s)	243, 408
SacII	CCGCGG	3 cut(s)	385, 585, 685
SatI	GCNGC	7 cut(s)	120, 306, 330, 385, 474, 582, 585
Sau3AI	GATC	5 cut(s)	95, 202, 274, 447, 678
Sau96I	GGNCC	5 cut(s)	50, 213, 214, 317, 379
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	4 cut(s)	63, 217, 243, 408
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	713
Sfr303I	CCGCGG	3 cut(s)	385, 585, 685
SgrAI	CRCCGGYG	1 cut(s)	469
SgrBI	CCGCGG	3 cut(s)	385, 585, 685
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	182, 589
SspMI	CTAG	1 cut(s)	696
SstI	GAGCTC	2 cut(s)	243, 408
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	574, 714
TaiI	ACGT	4 cut(s)	11, 143, 522, 633
TaqI	TCGA	5 cut(s)	84, 408, 414, 450, 576
TasI	AATT	2 cut(s)	182, 589
TauI	GCSGC	7 cut(s)	122, 308, 332, 387, 476, 584, 587
TscAI	CASTG	2 cut(s)	450, 531
TseFI	GTSAC	2 cut(s)	124, 482
Tsp45I	GTSAC	2 cut(s)	124, 482
TspDTI	ATGAA	3 cut(s)	22, 328, 379
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	2 cut(s)	450, 531
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	182
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.