Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

44753273 .. 44755565

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0328900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGCGTACTCTGTTAAAGCCACTACTAGCACAAAACCCATGTTACATCTTAGACTATGCACCAATTTTCCAGTCCTTAACTGGCCAAAACTTGTTGAAGCTAGGCCAACAGGTCCACACCCATATGGTCCTGCGTGGCATCGAACCCAATGCCTATCTTGGCGCCAAAATGGTTGCAATGTACGCCAGCTCTGGTGATCTTGACTCAGCTGTAAATGTGTTTCATAGAGTGAAGTACCCATCTCCACTTTTGTATAATTCGATTATTCGGGCTTATACTCTTCATGGTTACTCTGCGAGAACTATGGAAATTTATGGTCAGATGCAGTGTTTAGGCCTAAAGGGTGATCATTTTACCTACCCTTTTGTGCTCAAGTGTTGTGCAGAGTTGTCGAAGATTTGGATAGGGAAATGTGTTCATGGGCTGAGCTTGAGAACTGGGTTGGAGTCTGATATGTATGTTGGGACTTCTTTGATTGACATGTATGTGAAATGTTGTGAGATGGGGAGTGCACGTAAGCTGTTCGATGAAATGTCTGTGAGAGACGTTTCGTCGTGGAATGCGTTGATTGCCGGGTACATGAGAGAGGGTGAGATTTGTTCTGCTGAGGAGTTGTTTGGACAAATGAGGTGCAAGAATATTGTGTCTTGGACTGCTATGATATCGGGGTATGCTCAGAATGGGCTGGCTGAGCAGGCATTGAGTGTGTTTGATGAGATGTTGAAGAAAGATTCGGAGGTTAAGCCGAATTGGGTGACGGTAATGAGTGTTCTTCCTGCATGTGCACATTCGGCTGCGCTAGAGCGGGGGAGGAAGATTCACAAGTTTGCTAGCGGGATTGGTTTGGACTCGAATGATTCCATACAGACCGCGCTGGTAGCAATGTATGCTAAATGTGGGAGCCTTTCTGATGCTCGTCAGTGTTTTGATAGGATTCGTGGAAGTGAGAAGAATTTGGTTGTATGGAATACTATGATCACTGCTTATGCATCCCATGCACGCGGATCAGAAGCTGTGTCCACTTTTGAGGACATGGTGAGAGCCGGTGTTCAACCTGATCATATAACATTCACAGGATTGTTATCTGGATGCAGTCATTCAGGGCTTGTTGATGTTGGCTTAAAATACTTCGATGGCATGAAGACAGTATACTCTGTTGAACCAAGAGTTGAACATTATGCTTGTGTTGTTGATCTATTGGGTCGTGCAGGGCGATTGATGGAAGCAATGGATGTCGTAGATAAAATGCCAATGCAAGCTGGGGCAAGCGTTTGGGGTGCACTGTTATCAGCTTGTCGAAACTACCCAAACTTGGAAATTGCCGAAACTGCAGCCAGAAATCTCTTCATTTTGGAACCAGACAACAGTGGCAACTATGTCCTGCTATCTAATATATATGCTGAAGCTGGCATGTGGAAGGAGGTGGACAAATTGAGAATTCTATTAAAATCTCAAGGGATGAAGAAGAGCCCTGGAGGCAGTTGGATAGAGGTCAATGGGAAAGCCCATCTGTTTCTTGGTGGAGATACATCTCACTCTCAAGCAAAGGAAATTTACATGTTACTGGAGGAGTTACCGAAAAGGATGAAGGCAGCTGGTTATGTACCTGACACTAGGTTTGCTTTGCATGATGTTAGTGAAGAGGAGAAAGAACATAACCTTACAACCCACAGTGAAAAGCTTGCCATTGCCTTTGGACTTCTTAATACCGATCCTGGAGCAGTTCTTCGTGTGACAAAGAACCTTAGAATTTGTGGAGATTGTCATACAGCCACCAAGTTCATATCTAGAATCTATGGGAGGGAGATTATCATAAGAGACGTGAATCGATTCCATCACTTTAAAGATGGGCACTGTTCATGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

625

Amino Acids

69.41

Weight (kDa)

7.27

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	181 - 214	4.2e-06	PPR repeat family
PPR_2	PF13041	212 - 262	3.2e-10	PPR repeat family
PPR	PF01535	215 - 243	2.4e-09	PPR repeat
PPR_2	PF13041	318 - 365	1.8e-13	PPR repeat family
PPR	PF01535	320 - 350	5.8e-06	PPR repeat
E_motif	PF20431	435 - 497	7e-25	E motif
DYW_deaminase	PF14432	533 - 625	2.7e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	1149
AccII	CGCG	2 cut(s)	872, 1002
AciI	CCGC	4 cut(s)	805, 834, 870, 1002
AclWI	GGATC	2 cut(s)	1012, 1706
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	5 cut(s)	309, 952, 1437, 1551, 1749
AcuI	CTGAAG	1 cut(s)	1422
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	5 cut(s)	7, 182, 236, 578, 1605
AfiI	CCNNNNNNNGG	1 cut(s)	1312
AflIII	ACRYGT	2 cut(s)	480, 1557
AgsI	TTSAA	5 cut(s)	97, 724, 1052, 1160, 1172
AhdI	GACNNNNNGTC	1 cut(s)	550
AjiI	CACGTC	1 cut(s)	1822
AjnI	CCWGG	2 cut(s)	1471, 1714
Alw21I	GWGCWC	4 cut(s)	372, 514, 787, 1282
Alw26I	GTCTC	2 cut(s)	537, 1812
Alw44I	GTGCAC	3 cut(s)	510, 783, 1278
AlwI	GGATC	2 cut(s)	1012, 1706
AlwNI	CAGNNNCTG	1 cut(s)	1013
AoxI	GGCC	3 cut(s)	82, 103, 334
ApaLI	GTGCAC	3 cut(s)	510, 783, 1278
ApeKI	GCWGC	3 cut(s)	794, 1331, 1592
ApoI	RAATTY	5 cut(s)	309, 952, 1437, 1551, 1749
ArsI	GACNNNNNNTTYG	2 cut(s)	1601, 1633
Asp700I	GAANNNNTTC	1 cut(s)	1829
AspLEI	GCGC	3 cut(s)	164, 799, 874
AspS9I	GGNCC	2 cut(s)	112, 127
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	5 cut(s)	206, 356, 602, 766, 1048
AsuNHI	GCTAGC	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	112, 127
BaeGI	GKGCMC	4 cut(s)	514, 787, 1282, 1854
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	1472
BarI	GAAGNNNNNNTAC	2 cut(s)	1133, 1165
BbsI	GAAGAC	1 cut(s)	1148
Bbv12I	GWGCWC	4 cut(s)	372, 514, 787, 1282
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	781, 1343, 1604
BccI	CCATC	7 cut(s)	247, 496, 1127, 1213, 1515, 1841, 1842
BcgI	CGANNNNNNTGC	4 cut(s)	131, 165, 372, 406
BciT130I	CCWGG	2 cut(s)	1473, 1716
BclI	TGATCA	3 cut(s)	346, 975, 1057
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	537, 1812
BfaI	CTAG	6 cut(s)	26, 101, 800, 831, 1614, 1788
BfmI	CTRYAG	1 cut(s)	1329
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	1476
BisI	GCNGC	3 cut(s)	795, 1332, 1593
BlpI	GCTNAGC	2 cut(s)	425, 690
BlsI	GCNGC	3 cut(s)	796, 1333, 1594
Bme1390I	CCNGG	3 cut(s)	574, 1473, 1716
Bme18I	GGWCC	2 cut(s)	112, 127
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	1822
BmgT120I	GGNCC	2 cut(s)	112, 127
BmiI	GGNNCC	3 cut(s)	163, 902, 1356
BmrFI	CCNGG	3 cut(s)	574, 1473, 1716
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	5 cut(s)	147, 312, 901, 998, 1079
BmtI	GCTAGC	1 cut(s)	834
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	1148
BpmI	CTGGAG	3 cut(s)	1494, 1586, 1737
Bpu10I	CCTNAGC	1 cut(s)	606
Bpu1102I	GCTNAGC	2 cut(s)	425, 690
BpuEI	CTTGAG	4 cut(s)	356, 451, 1437, 1524
BpuMI	CCSGG	1 cut(s)	574
Bsa29I	ATCGAT	1 cut(s)	1828
BsaAI	YACGTR	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	1081
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	1471
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	1312
Bse118I	RCCGGY	1 cut(s)	1043
Bse1I	ACTGG	4 cut(s)	70, 85, 442, 1569
Bse3DI	GCAATG	4 cut(s)	183, 888, 1233, 1686
Bse8I	GATNNNNATC	1 cut(s)	1081
BseBI	CCWGG	2 cut(s)	1473, 1716
BseCI	ATCGAT	1 cut(s)	1828
BseDI	CCNNGG	1 cut(s)	1471
BseGI	GGATG	5 cut(s)	989, 1094, 1237, 1464, 1590
BseJI	GATNNNNATC	1 cut(s)	1081
BseLI	CCNNNNNNNGG	1 cut(s)	1312
BseMI	GCAATG	4 cut(s)	183, 888, 1233, 1686
BseMII	CTCAG	5 cut(s)	219, 416, 597, 681, 689
BseNI	ACTGG	4 cut(s)	70, 85, 442, 1569
BseRI	GAGGAG	3 cut(s)	623, 1583, 1658
BseSI	GKGCMC	4 cut(s)	514, 787, 1282, 1854
BseXI	GCAGC	3 cut(s)	781, 1343, 1604
BseYI	CCCAGC	1 cut(s)	1259
BsgI	GTGCAG	2 cut(s)	402, 1227
Bsh1236I	CGCG	2 cut(s)	872, 1002
BshFI	GGCC	3 cut(s)	84, 105, 336
BshNI	GGYRCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	1828
BsiHKAI	GWGCWC	4 cut(s)	372, 514, 787, 1282
BsiSI	CCGG	2 cut(s)	573, 1044
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	1312
BsmAI	GTCTC	2 cut(s)	537, 1812
BsmBI	CGTCTC	2 cut(s)	537, 1812
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	84, 105, 336
Bsp1286I	GDGCHC	6 cut(s)	372, 514, 787, 1282, 1472, 1854
Bsp143I	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
Bsp1720I	GCTNAGC	2 cut(s)	425, 690
BspACI	CCGC	4 cut(s)	805, 834, 870, 1002
BspANI	GGCC	3 cut(s)	84, 105, 336
BspCNI	CTCAG	5 cut(s)	218, 417, 598, 682, 688
BspDI	ATCGAT	1 cut(s)	1828
BspFNI	CGCG	2 cut(s)	872, 1002
BspLI	GGNNCC	3 cut(s)	163, 902, 1356
BspMAI	CTGCAG	1 cut(s)	1333
BspOI	GCTAGC	1 cut(s)	834
BspPI	GGATC	2 cut(s)	1012, 1706
BspQI	GCTCTTC	1 cut(s)	1460
BspT107I	GGYRCC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	805
BsrDI	GCAATG	4 cut(s)	183, 888, 1233, 1686
BsrFI	RCCGGY	1 cut(s)	1043
BsrI	ACTGG	4 cut(s)	70, 85, 442, 1569
BssAI	RCCGGY	1 cut(s)	1043
BssECI	CCNNGG	1 cut(s)	1471
BssMI	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
BssNAI	GTATAC	1 cut(s)	1150
BssNI	GRCGYC	1 cut(s)	162
Bst1107I	GTATAC	1 cut(s)	1150
Bst2UI	CCWGG	2 cut(s)	1473, 1716
Bst4CI	ACNGT	6 cut(s)	760, 1147, 1284, 1367, 1673, 1856
Bst6I	CTCTTC	4 cut(s)	285, 1349, 1460, 1635
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	2 cut(s)	887, 995
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	9 cut(s)	187, 687, 696, 832, 1000, 1257, 1267, 1408, 1683
BstDEI	CTNAG	7 cut(s)	49, 205, 425, 606, 675, 690, 1745
BstF5I	GGATG	5 cut(s)	989, 1094, 1237, 1464, 1590
BstFNI	CGCG	2 cut(s)	872, 1002
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	164, 799, 874
BstKTI	GATC	7 cut(s)	199, 349, 978, 1007, 1060, 1195, 1714
BstMAI	GTCTC	2 cut(s)	537, 1812
BstMBI	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
BstNI	CCWGG	2 cut(s)	1473, 1716
BstNSI	RCATGY	4 cut(s)	484, 783, 1414, 1561
BstSCI	CCNGG	3 cut(s)	572, 1471, 1714
BstSFI	CTRYAG	1 cut(s)	1329
BstSLI	GKGCMC	4 cut(s)	514, 787, 1282, 1854
BstUI	CGCG	2 cut(s)	872, 1002
BstV1I	GCAGC	3 cut(s)	781, 1343, 1604
BstV2I	GAAGAC	1 cut(s)	1148
BstZ17I	GTATAC	1 cut(s)	1150
Bsu15I	ATCGAT	1 cut(s)	1828
BsuRI	GGCC	3 cut(s)	84, 105, 336
BsuTUI	ATCGAT	1 cut(s)	1828
BtrI	CACGTC	1 cut(s)	1822
BtsCI	GGATG	5 cut(s)	989, 1094, 1237, 1464, 1590
BtsI	GCAGTG	2 cut(s)	332, 978
BtsIMutI	CAGTG	7 cut(s)	332, 926, 978, 1280, 1372, 1678, 1852
Cac8I	GCNNGC	9 cut(s)	187, 687, 696, 832, 1000, 1257, 1267, 1408, 1683
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	3 cut(s)	164, 799, 874
Cfr10I	RCCGGY	1 cut(s)	1043
Cfr13I	GGNCC	2 cut(s)	112, 127
ClaI	ATCGAT	1 cut(s)	1828
Csp6I	GTAC	5 cut(s)	6, 181, 235, 577, 1604
CviQI	GTAC	5 cut(s)	6, 181, 235, 577, 1604
DdeI	CTNAG	7 cut(s)	49, 205, 425, 606, 675, 690, 1745
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	7 cut(s)	198, 348, 977, 1006, 1059, 1194, 1713
DpnII	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
DraI	TTTAAA	1 cut(s)	1843
DriI	GACNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	4 cut(s)	285, 1349, 1460, 1635
Eam1105I	GACNNNNNGTC	1 cut(s)	550
EarI	CTCTTC	4 cut(s)	285, 1349, 1460, 1635
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	1472
Eco32I	GATATC	1 cut(s)	663
Eco47I	GGWCC	2 cut(s)	112, 127
Eco57I	CTGAAG	1 cut(s)	1422
EcoRI	GAATTC	1 cut(s)	1437
EcoRII	CCWGG	2 cut(s)	1471, 1714
EcoRV	GATATC	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	991
EcoT38I	GRGCYC	1 cut(s)	1472
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
Esp3I	CGTCTC	2 cut(s)	537, 1812
FaqI	GGGAC	1 cut(s)	478
FauI	CCCGC	2 cut(s)	798, 827
FauNDI	CATATG	1 cut(s)	123
FbaI	TGATCA	3 cut(s)	346, 975, 1057
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	3 cut(s)	795, 1332, 1593
FokI	GGATG	5 cut(s)	976, 1101, 1244, 1471, 1597
FriOI	GRGCYC	1 cut(s)	1472
Fsp4HI	GCNGC	3 cut(s)	795, 1332, 1593
FspBI	CTAG	6 cut(s)	26, 101, 800, 831, 1614, 1788
GlaI	GCGC	3 cut(s)	163, 798, 873
GluI	GCNGC	3 cut(s)	795, 1332, 1593
GsaI	CCCAGC	1 cut(s)	1263
GsuI	CTGGAG	3 cut(s)	1494, 1586, 1737
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	84, 105, 336
HapII	CCGG	2 cut(s)	573, 1044
HhaI	GCGC	3 cut(s)	164, 799, 874
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	3 cut(s)	162, 797, 872
HinP1I	GCGC	3 cut(s)	162, 797, 872
HindIII	AAGCTT	1 cut(s)	1679
HpaII	CCGG	2 cut(s)	573, 1044
HphI	GGTGA	5 cut(s)	206, 356, 602, 766, 1048
Hpy166II	GTNNAC	7 cut(s)	115, 512, 785, 1020, 1150, 1280, 1426
Hpy188I	TCNGA	6 cut(s)	321, 451, 678, 736, 910, 1009
Hpy188III	TCNNGA	3 cut(s)	200, 1086, 1788
Hpy8I	GTNNAC	7 cut(s)	115, 512, 785, 1020, 1150, 1280, 1426
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	1411, 1582
HpyCH4III	ACNGT	6 cut(s)	760, 1147, 1284, 1367, 1673, 1856
HpyCH4IV	ACGT	3 cut(s)	514, 546, 1821
HpyF3I	CTNAG	7 cut(s)	49, 205, 425, 606, 675, 690, 1745
HpySE526I	ACGT	3 cut(s)	514, 546, 1821
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	3 cut(s)	162, 797, 872
KasI	GGCGCC	1 cut(s)	161
Ksp22I	TGATCA	3 cut(s)	346, 975, 1057
Kzo9I	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
LguI	GCTCTTC	1 cut(s)	1460
LmnI	GCTCC	2 cut(s)	900, 1718
Lsp1109I	GCAGC	3 cut(s)	781, 1343, 1604
LweI	GCATC	5 cut(s)	147, 312, 901, 998, 1079
MaeI	CTAG	6 cut(s)	26, 101, 800, 831, 1614, 1788
MaeII	ACGT	3 cut(s)	514, 546, 1821
MaeIII	GTNAC	6 cut(s)	41, 287, 754, 1560, 1572, 1732
MalI	GATC	7 cut(s)	198, 348, 977, 1006, 1059, 1194, 1713
MbiI	CCGCTC	1 cut(s)	805
MboI	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
MhlI	GDGCHC	6 cut(s)	372, 514, 787, 1282, 1472, 1854
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	197, 455, 842
MmeI	TCCRAC	2 cut(s)	423, 1463
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	991
MroXI	GAANNNNTTC	1 cut(s)	1829
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	7 cut(s)	14, 77, 741, 1121, 1445, 1704, 1842
MslI	CAYNNNNRTG	2 cut(s)	122, 485
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	2 cut(s)	209, 1595
MspI	CCGG	2 cut(s)	573, 1044
MspR9I	CCNGG	3 cut(s)	574, 1473, 1716
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	2 cut(s)	1473, 1716
MvnI	CGCG	2 cut(s)	872, 1002
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	574
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
NheI	GCTAGC	1 cut(s)	830
NlaIV	GGNNCC	3 cut(s)	163, 902, 1356
NmuCI	GTSAC	2 cut(s)	754, 1732
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	4 cut(s)	484, 783, 1414, 1561
PceI	AGGCCT	1 cut(s)	336
PciI	ACATGT	2 cut(s)	480, 1557
PciSI	GCTCTTC	1 cut(s)	1460
PcsI	WCGNNNNNNNCGW	2 cut(s)	560, 1210
PctI	GAATGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	1829
PfeI	GAWTC	7 cut(s)	731, 817, 857, 934, 1791, 1825, 1830
PfoI	TCCNGGA	1 cut(s)	1714
PkrI	GCNGC	3 cut(s)	796, 1333, 1594
PleI	GAGTC	3 cut(s)	197, 454, 842
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	3 cut(s)	197, 454, 842
Ppu21I	YACGTR	1 cut(s)	515
PscI	ACATGT	2 cut(s)	480, 1557
Psp6I	CCWGG	2 cut(s)	1471, 1714
PspFI	CCCAGC	1 cut(s)	1259
PspGI	CCWGG	2 cut(s)	1471, 1714
PspN4I	GGNNCC	3 cut(s)	163, 902, 1356
PspPI	GGNCC	2 cut(s)	112, 127
PsrI	GAACNNNNNNTAC	2 cut(s)	753, 785
PstI	CTGCAG	1 cut(s)	1333
PstNI	CAGNNNCTG	1 cut(s)	1013
PvuII	CAGCTG	2 cut(s)	209, 1595
RsaI	GTAC	5 cut(s)	7, 182, 236, 578, 1605
RsaNI	GTAC	5 cut(s)	6, 181, 235, 577, 1604
RseI	CAYNNNNRTG	2 cut(s)	122, 485
SapI	GCTCTTC	1 cut(s)	1460
SaqAI	TTAA	7 cut(s)	14, 77, 741, 1121, 1445, 1704, 1842
SatI	GCNGC	3 cut(s)	795, 1332, 1593
Sau3AI	GATC	7 cut(s)	196, 346, 975, 1004, 1057, 1192, 1711
Sau96I	GGNCC	2 cut(s)	112, 127
SchI	GAGTC	3 cut(s)	197, 455, 842
ScrFI	CCNGG	3 cut(s)	574, 1473, 1716
SduI	GDGCHC	6 cut(s)	372, 514, 787, 1282, 1472, 1854
SfaNI	GCATC	5 cut(s)	147, 312, 901, 998, 1079
SfcI	CTRYAG	1 cut(s)	1329
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	112, 127
SmiMI	CAYNNNNRTG	2 cut(s)	122, 485
SmlI	CTYRAG	4 cut(s)	371, 430, 1452, 1539
SmoI	CTYRAG	4 cut(s)	371, 430, 1452, 1539
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	4 cut(s)	805, 834, 870, 1002
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	6 cut(s)	26, 101, 800, 831, 1614, 1788
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	572, 1471, 1714
TaaI	ACNGT	6 cut(s)	760, 1147, 1284, 1367, 1673, 1856
TaiI	ACGT	3 cut(s)	517, 549, 1824
TaqI	TCGA	8 cut(s)	141, 260, 392, 525, 851, 1131, 1297, 1828
TfiI	GAWTC	7 cut(s)	731, 817, 857, 934, 1791, 1825, 1830
Tru1I	TTAA	7 cut(s)	14, 77, 741, 1121, 1445, 1704, 1842
Tru9I	TTAA	7 cut(s)	14, 77, 741, 1121, 1445, 1704, 1842
TscAI	CASTG	7 cut(s)	332, 926, 985, 1287, 1372, 1678, 1859
TseFI	GTSAC	2 cut(s)	754, 1732
TseI	GCWGC	3 cut(s)	794, 1331, 1592
Tsp45I	GTSAC	2 cut(s)	754, 1732
TspRI	CASTG	7 cut(s)	332, 926, 985, 1287, 1372, 1678, 1859
VneI	GTGCAC	3 cut(s)	510, 783, 1278
VpaK11BI	GGWCC	2 cut(s)	112, 127
XapI	RAATTY	5 cut(s)	309, 952, 1437, 1551, 1749
XbaI	TCTAGA	1 cut(s)	1787
XceI	RCATGY	4 cut(s)	484, 783, 1414, 1561
XcmI	CCANNNNNNNNNTGG	2 cut(s)	77, 1514
XmiI	GTMKAC	1 cut(s)	1149
XmnI	GAANNNNTTC	1 cut(s)	1829
XspI	CTAG	6 cut(s)	26, 101, 800, 831, 1614, 1788
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.