Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Forward (+)

10852004 .. 10852702

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027353

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTGCACGTTGGAGAAGAAAGGCGACATCTTCATCCTCACGCTAACTGGGCCAGGTGAGCATAGGCTCAACCCAACTCTACTGGATGCAATCCAATCCGCTTTAAACACCGTCCGAGCCGCCGCCACGTCATCCTCCGTAGCCCTGATCACCACCGCACACGGCAAATTCTTCTCCAACGGCTTCGATCTGGACTGGGCCGGATCGGACAAAGCCCGGCGCAAGCTCATGGCCTCGAAGCTCCGGCCGGTCGTGGCCGACTTCATCTCCCTCCCGTTGCCGACCATCGCTGCCGTCACCGGCCACGCCTCCGCCGCCGGCTTCGTCCTCGCGCGGTGCCACGACTATGTTTTGATGAGGAAGGACAGGGGGTTCGTCTACATGAGCGAGATGGACATCGCGCTTGTGATTCCGGCTTGGGTTCACGCGCTGATTAAGAACAAGGTCGGGTCGGCGGCGGTGCTGCGCGATTTGATGCTCAGAGCGGATAAGATGACTGCATCGGTGGCCGTGGAGAAGGGGATTGTTGACTCGGCGGTTAATGGCGCGGAGGAGACGGTTGAGGCGGCGGTTAGATTGGGGGAGGAGTTGGTTAGGAGGAAGTGGAAGGGACACGTGTACGCTCAGATTCGCCTTGGCTTGATGTCAGAGGTCTTGGAGGCGATGCGAAACCATGACAGTACTAGATCCTTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

233

Amino Acids

25.2

Weight (kDa)

9.3

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	7 - 200	3.2e-22	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccBSI	CCGCTC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	6 cut(s)	332, 334, 401, 428, 468, 548
AclWI	GGATC	2 cut(s)	211, 681
AcoI	YGGCCR	4 cut(s)	245, 255, 301, 507
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	616
AfaI	GTAC	2 cut(s)	620, 682
AflIII	ACRYGT	2 cut(s)	613, 615
AjiI	CACGTC	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	2 cut(s)	226, 241
AluI	AGCT	2 cut(s)	226, 241
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	548
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	211, 681
AoxI	GGCC	7 cut(s)	50, 198, 231, 245, 255, 301, 507
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	290, 463
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspLEI	GCGC	6 cut(s)	222, 334, 403, 430, 468, 548
AspS9I	GGNCC	2 cut(s)	50, 198
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	68, 142, 289
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	336
BbrPI	CACGTG	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	277, 450
BccI	CCATC	2 cut(s)	293, 385
BceAI	ACGGC	4 cut(s)	178, 196, 278, 494
BciT130I	CCWGG	1 cut(s)	54
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	695
BisI	GCNGC	7 cut(s)	120, 123, 291, 315, 456, 464, 567
BlsI	GCNGC	7 cut(s)	121, 124, 292, 316, 457, 465, 568
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	2 cut(s)	54, 217
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	50, 198
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	2 cut(s)	54, 217
BmrI	ACTGGG	2 cut(s)	57, 205
BmsI	GCATC	4 cut(s)	76, 465, 509, 654
BmuI	ACTGGG	2 cut(s)	57, 205
BpuMI	CCSGG	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	616
BsaBI	GATNNNNATC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	510, 634
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse118I	RCCGGY	3 cut(s)	247, 299, 317
Bse1I	ACTGG	3 cut(s)	52, 87, 200
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	510, 634
BseGI	GGATG	3 cut(s)	33, 91, 131
BseJI	GATNNNNATC	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	493, 638
BseNI	ACTGG	3 cut(s)	52, 87, 200
BseRI	GAGGAG	2 cut(s)	566, 599
BseSI	GKGCMC	1 cut(s)	8
BseX3I	CGGCCG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	277, 450
Bsh1236I	CGCG	6 cut(s)	332, 334, 401, 428, 468, 548
Bsh1285I	CGRYCG	2 cut(s)	248, 252
BshFI	GGCC	7 cut(s)	52, 200, 233, 247, 257, 303, 509
BshNI	GGYRCC	1 cut(s)	336
BsiEI	CGRYCG	2 cut(s)	248, 252
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	7 cut(s)	201, 217, 244, 248, 300, 318, 413
BslFI	GGGAC	1 cut(s)	624
BsmAI	GTCTC	1 cut(s)	548
BsmBI	CGTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	7 cut(s)	52, 200, 233, 247, 257, 303, 509
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	147, 187, 203, 686
BspANI	GGCC	7 cut(s)	52, 200, 233, 247, 257, 303, 509
BspCNI	CTCAG	2 cut(s)	492, 637
BspFNI	CGCG	6 cut(s)	332, 334, 401, 428, 468, 548
BspLI	GGNNCC	1 cut(s)	338
BspPI	GGATC	2 cut(s)	211, 681
BspT107I	GGYRCC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	485
BsrFI	RCCGGY	3 cut(s)	247, 299, 317
BsrI	ACTGG	3 cut(s)	52, 87, 200
BssAI	RCCGGY	3 cut(s)	247, 299, 317
BssECI	CCNNGG	2 cut(s)	510, 634
BssMI	GATC	4 cut(s)	147, 187, 203, 686
BssT1I	CCWWGG	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	112, 559, 680, 696
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	224, 319
BstDEI	CTNAG	2 cut(s)	479, 624
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	33, 91, 131
BstFNI	CGCG	6 cut(s)	332, 334, 401, 428, 468, 548
BstHHI	GCGC	6 cut(s)	222, 334, 403, 430, 468, 548
BstKTI	GATC	4 cut(s)	150, 190, 206, 689
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	147, 187, 203, 686
BstMCI	CGRYCG	2 cut(s)	248, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 58, 314, 506
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	52, 215
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	6 cut(s)	332, 334, 401, 428, 468, 548
BstV1I	GCAGC	2 cut(s)	277, 450
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
BstZI	CGGCCG	1 cut(s)	245
BsuRI	GGCC	7 cut(s)	52, 200, 233, 247, 257, 303, 509
BtgI	CCRYGG	1 cut(s)	510
BtgZI	GCGATG	3 cut(s)	271, 382, 677
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	33, 91, 131
Cac8I	GCNNGC	2 cut(s)	224, 319
CfoI	GCGC	6 cut(s)	222, 334, 403, 430, 468, 548
Cfr10I	RCCGGY	3 cut(s)	247, 299, 317
Cfr13I	GGNCC	2 cut(s)	50, 198
Csp6I	GTAC	2 cut(s)	619, 681
CviAII	CATG	3 cut(s)	229, 382, 674
CviQI	GTAC	2 cut(s)	619, 681
DdeI	CTNAG	2 cut(s)	479, 624
DpnI	GATC	4 cut(s)	149, 189, 205, 688
DpnII	GATC	4 cut(s)	147, 187, 203, 686
DraI	TTTAAA	1 cut(s)	105
EaeI	YGGCCR	4 cut(s)	245, 255, 301, 507
EagI	CGGCCG	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	301
EclXI	CGGCCG	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	634
Eco52I	CGGCCG	1 cut(s)	245
Eco72I	CACGTG	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	3 cut(s)	232, 385, 677
FaiI	YATR	5 cut(s)	63, 230, 348, 383, 675
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	3 cut(s)	228, 381, 673
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	7 cut(s)	120, 123, 291, 315, 456, 464, 567
FokI	GGATG	3 cut(s)	20, 98, 118
Fsp4HI	GCNGC	7 cut(s)	120, 123, 291, 315, 456, 464, 567
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	6 cut(s)	221, 333, 402, 429, 467, 547
GluI	GCNGC	7 cut(s)	120, 123, 291, 315, 456, 464, 567
HaeIII	GGCC	7 cut(s)	52, 200, 233, 247, 257, 303, 509
HapII	CCGG	7 cut(s)	201, 217, 244, 248, 300, 318, 413
HhaI	GCGC	6 cut(s)	222, 334, 403, 430, 468, 548
Hin1II	CATG	3 cut(s)	232, 385, 677
Hin6I	GCGC	6 cut(s)	220, 332, 401, 428, 466, 546
HinP1I	GCGC	6 cut(s)	220, 332, 401, 428, 466, 546
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	409, 530, 628
HpaII	CCGG	7 cut(s)	201, 217, 244, 248, 300, 318, 413
HphI	GGTGA	3 cut(s)	68, 142, 289
Hpy166II	GTNNAC	5 cut(s)	6, 379, 424, 529, 619
Hpy188I	TCNGA	5 cut(s)	116, 208, 482, 627, 649
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	5 cut(s)	6, 379, 424, 529, 619
HpyAV	CCTTC	3 cut(s)	355, 511, 601
HpyCH4III	ACNGT	4 cut(s)	112, 559, 680, 696
HpyCH4IV	ACGT	3 cut(s)	8, 128, 615
HpyCH4V	TGCA	3 cut(s)	6, 89, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 58, 314, 506
HpyF3I	CTNAG	2 cut(s)	479, 624
HpySE526I	ACGT	3 cut(s)	8, 128, 615
Hsp92II	CATG	3 cut(s)	232, 385, 677
HspAI	GCGC	6 cut(s)	220, 332, 401, 428, 466, 546
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	147, 187, 203, 686
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	277, 450
LweI	GCATC	4 cut(s)	76, 465, 509, 654
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	3 cut(s)	8, 128, 615
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	4 cut(s)	149, 189, 205, 688
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	4 cut(s)	147, 187, 203, 686
MboII	GAAGA	3 cut(s)	22, 28, 163
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	201
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	3 cut(s)	104, 435, 540
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	7 cut(s)	201, 217, 244, 248, 300, 318, 413
MspR9I	CCNGG	2 cut(s)	54, 217
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	6 cut(s)	332, 334, 401, 428, 468, 548
MwoI	GCNNNNNNNGC	4 cut(s)	49, 58, 314, 506
NaeI	GCCGGC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	147, 187, 203, 686
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	232, 385, 677
NlaIV	GGNNCC	1 cut(s)	338
NmeAIII	GCCGAG	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	295
PdiI	GCCGGC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	409, 628
PkrI	GCNGC	7 cut(s)	121, 124, 292, 316, 457, 465, 568
PleI	GAGTC	1 cut(s)	524
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	52
PspCI	CACGTG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	50, 198
PsuI	RGATCY	1 cut(s)	686
RsaI	GTAC	2 cut(s)	620, 682
RsaNI	GTAC	2 cut(s)	619, 681
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	104, 435, 540
SatI	GCNGC	7 cut(s)	120, 123, 291, 315, 456, 464, 567
Sau3AI	GATC	4 cut(s)	147, 187, 203, 686
Sau96I	GGNCC	2 cut(s)	50, 198
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	54, 217
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	11, 58, 131, 228, 243, 447, 618, 654
SfaNI	GCATC	4 cut(s)	76, 465, 509, 654
SfcI	CTRYAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	52, 215
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	4 cut(s)	112, 559, 680, 696
TaiI	ACGT	3 cut(s)	11, 131, 618
TaqI	TCGA	2 cut(s)	186, 236
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	680
TauI	GCSGC	5 cut(s)	122, 125, 317, 458, 569
TfiI	GAWTC	2 cut(s)	409, 628
Tru1I	TTAA	3 cut(s)	104, 435, 540
Tru9I	TTAA	3 cut(s)	104, 435, 540
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	290, 463
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	22, 253
TspGWI	ACGGA	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	1 cut(s)	684
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.