Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

25571318 .. 25572410

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G231700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTGCACGTTAGAGAGAAAAGGCAACATCTTCATCCTAACGCTAACAGGCCCAGGCGAGCACAGGCTCAACCCCACTCTCATCGACTCAATCCAATCCGCACTAACCCAAGTCCGGGCCGCCGTGACCACCACCTCCGCATCGTCGTCACCGGCAGCCTTAATCACCACCGCACATGGCAAGTTCTTCTCCAACGGCTACGATCTCTCCTGGGCCCAGTCCTCCCAATCCCGGACCTACCTCATGGACGCCAAGCTCCGGTCCCTCGTCTCCGACTTCATCTCGCTCCCCGTGCCCACCATCGCCGCCGTATCAGGCCACGCCTCCGCCGCCGGGTTCATCCTCGCTCTCAGCCACGACCACCTCCTCATGAGGCGAGACCGCGGCTTCATCTACATGAGCGAGCTCGACATCGAGCTCATTTTGCCGGCTTGGTTCTTGGCTCTGATCGAGAGCAAGGTCGGTTCGCCGAGGGCTCGGCGCGACCTGTTGCTCAGAGCCGATAAGGTGACGGCTGACGTGGCAGTGAAGAAGGGGATCATCGACTCGGCGCACGATAGCGCGGAGGAGACGGTTGAGGCCGCGGTGAGATTGGGGGAGGATTTGGTTGGGCGGAAGTGGAATGGACACGTGTACGCTCAGATTCGCATGGACTTGTTGTCTGAGGTTTTAGATGAGATCCGAGGGGATAACGGTACTGGCTTGAGATCGAAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

240

Amino Acids

26.01

Weight (kDa)

6.66

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	384, 483, 563, 584
AclWI	GGATC	2 cut(s)	545, 673
AcvI	CACGTG	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	635, 697
AfiI	CCNNNNNNNGG	5 cut(s)	114, 115, 231, 258, 333
AflIII	ACRYGT	2 cut(s)	628, 630
AhdI	GACNNNNNGTC	1 cut(s)	658
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	52, 209
AluBI	AGCT	3 cut(s)	256, 406, 418
AluI	AGCT	3 cut(s)	256, 406, 418
Alw21I	GWGCWC	4 cut(s)	8, 63, 408, 420
Alw26I	GTCTC	3 cut(s)	274, 372, 563
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	545, 673
AoxI	GGCC	5 cut(s)	49, 117, 213, 316, 579
ApaI	GGGCCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	155
AspLEI	GCGC	3 cut(s)	483, 553, 563
AspS9I	GGNCC	6 cut(s)	50, 117, 213, 214, 234, 261
AsuC2I	CCSGG	3 cut(s)	116, 232, 334
AsuHPI	GGTGA	4 cut(s)	141, 157, 520, 598
AvaII	GGWCC	2 cut(s)	234, 261
BaeGI	GKGCMC	3 cut(s)	8, 217, 297
BanII	GRGCYC	4 cut(s)	217, 408, 420, 478
BbrPI	CACGTG	1 cut(s)	631
Bbv12I	GWGCWC	4 cut(s)	8, 63, 408, 420
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	4 cut(s)	107, 211, 293, 528
BciT130I	CCWGG	2 cut(s)	54, 211
BcnI	CCSGG	3 cut(s)	116, 232, 334
BcoDI	GTCTC	3 cut(s)	274, 372, 563
BfmI	CTRYAG	1 cut(s)	716
BisI	GCNGC	6 cut(s)	120, 156, 306, 330, 385, 582
BlsI	GCNGC	6 cut(s)	121, 157, 307, 331, 386, 583
Bme1390I	CCNGG	5 cut(s)	54, 116, 211, 232, 334
Bme18I	GGWCC	2 cut(s)	234, 261
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	6 cut(s)	50, 117, 213, 214, 234, 261
BmiI	GGNNCC	2 cut(s)	215, 263
BmrFI	CCNGG	5 cut(s)	54, 116, 211, 232, 334
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	211
BpuMI	CCSGG	3 cut(s)	116, 232, 334
BsaAI	YACGTR	1 cut(s)	631
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	6 cut(s)	52, 210, 382, 470, 582, 682
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 115, 231, 258, 333
Bse118I	RCCGGY	2 cut(s)	151, 427
Bse1I	ACTGG	2 cut(s)	217, 703
BseBI	CCWGG	2 cut(s)	54, 211
BseDI	CCNNGG	6 cut(s)	52, 210, 382, 470, 582, 682
BseGI	GGATG	2 cut(s)	33, 339
BseLI	CCNNNNNNNGG	5 cut(s)	114, 115, 231, 258, 333
BseMII	CTCAG	4 cut(s)	364, 508, 653, 654
BseNI	ACTGG	2 cut(s)	217, 703
BseRI	GAGGAG	2 cut(s)	356, 581
BseSI	GKGCMC	3 cut(s)	8, 217, 297
BseXI	GCAGC	1 cut(s)	167
Bsh1236I	CGCG	4 cut(s)	384, 483, 563, 584
BshFI	GGCC	5 cut(s)	51, 119, 215, 318, 581
BsiHKAI	GWGCWC	4 cut(s)	8, 63, 408, 420
BsiSI	CCGG	6 cut(s)	115, 152, 232, 259, 333, 428
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	5 cut(s)	114, 115, 231, 258, 333
BsmAI	GTCTC	3 cut(s)	274, 372, 563
BsmBI	CGTCTC	2 cut(s)	274, 563
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	5 cut(s)	51, 119, 215, 318, 581
Bso31I	GGTCTC	1 cut(s)	372
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	7 cut(s)	8, 63, 217, 297, 408, 420, 478
Bsp143I	GATC	5 cut(s)	202, 447, 537, 678, 707
BspANI	GGCC	5 cut(s)	51, 119, 215, 318, 581
BspCNI	CTCAG	4 cut(s)	363, 507, 652, 655
BspFNI	CGCG	4 cut(s)	384, 483, 563, 584
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	215, 263
BspPI	GGATC	2 cut(s)	545, 673
BspTNI	GGTCTC	1 cut(s)	372
BsrFI	RCCGGY	2 cut(s)	151, 427
BsrI	ACTGG	2 cut(s)	217, 703
BssAI	RCCGGY	2 cut(s)	151, 427
BssECI	CCNNGG	6 cut(s)	52, 210, 382, 470, 582, 682
BssMI	GATC	5 cut(s)	202, 447, 537, 678, 707
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	54, 211
Bst4CI	ACNGT	3 cut(s)	574, 695, 717
BstACI	GRCGYC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	3 cut(s)	59, 404, 429
BstDEI	CTNAG	4 cut(s)	350, 494, 639, 663
BstDSI	CCRYGG	2 cut(s)	382, 582
BstF5I	GGATG	2 cut(s)	33, 339
BstFNI	CGCG	4 cut(s)	384, 483, 563, 584
BstHHI	GCGC	3 cut(s)	483, 553, 563
BstKTI	GATC	5 cut(s)	205, 450, 540, 681, 710
BstMAI	GTCTC	3 cut(s)	274, 372, 563
BstMBI	GATC	5 cut(s)	202, 447, 537, 678, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 329, 424, 521
BstNI	CCWGG	2 cut(s)	54, 211
BstSCI	CCNGG	5 cut(s)	52, 114, 209, 230, 332
BstSFI	CTRYAG	1 cut(s)	716
BstSLI	GKGCMC	3 cut(s)	8, 217, 297
BstUI	CGCG	4 cut(s)	384, 483, 563, 584
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
BsuRI	GGCC	5 cut(s)	51, 119, 215, 318, 581
BtgI	CCRYGG	2 cut(s)	382, 582
BtgZI	GCGATG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	33, 339
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	3 cut(s)	59, 404, 429
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	3 cut(s)	483, 553, 563
Cfr10I	RCCGGY	2 cut(s)	151, 427
Cfr13I	GGNCC	6 cut(s)	50, 117, 213, 214, 234, 261
Cfr42I	CCGCGG	2 cut(s)	385, 585
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	634, 696
CviAII	CATG	5 cut(s)	176, 244, 370, 397, 649
CviQI	GTAC	2 cut(s)	634, 696
DdeI	CTNAG	4 cut(s)	350, 494, 639, 663
DpnI	GATC	5 cut(s)	204, 449, 539, 680, 709
DpnII	GATC	5 cut(s)	202, 447, 537, 678, 707
DriI	GACNNNNNGTC	1 cut(s)	658
Eam1105I	GACNNNNNGTC	1 cut(s)	658
EciI	GGCGGA	2 cut(s)	316, 628
Ecl136II	GAGCTC	2 cut(s)	406, 418
Eco24I	GRGCYC	4 cut(s)	217, 408, 420, 478
Eco31I	GGTCTC	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	234, 261
Eco53kI	GAGCTC	2 cut(s)	406, 418
Eco72I	CACGTG	1 cut(s)	631
EcoICRI	GAGCTC	2 cut(s)	406, 418
EcoRII	CCWGG	2 cut(s)	52, 209
EcoT38I	GRGCYC	4 cut(s)	217, 408, 420, 478
Esp3I	CGTCTC	2 cut(s)	274, 563
FaeI	CATG	5 cut(s)	179, 247, 373, 400, 652
FaiI	YATR	5 cut(s)	177, 245, 371, 398, 650
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	5 cut(s)	175, 243, 369, 396, 648
Fnu4HI	GCNGC	6 cut(s)	120, 156, 306, 330, 385, 582
FokI	GGATG	2 cut(s)	20, 326
FriOI	GRGCYC	4 cut(s)	217, 408, 420, 478
Fsp4HI	GCNGC	6 cut(s)	120, 156, 306, 330, 385, 582
GlaI	GCGC	3 cut(s)	482, 552, 562
GluI	GCNGC	6 cut(s)	120, 156, 306, 330, 385, 582
HaeIII	GGCC	5 cut(s)	51, 119, 215, 318, 581
HapII	CCGG	6 cut(s)	115, 152, 232, 259, 333, 428
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	3 cut(s)	483, 553, 563
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	5 cut(s)	179, 247, 373, 400, 652
Hin6I	GCGC	3 cut(s)	481, 551, 561
HinP1I	GCGC	3 cut(s)	481, 551, 561
HinfI	GANTC	3 cut(s)	86, 545, 643
HpaII	CCGG	6 cut(s)	115, 152, 232, 259, 333, 428
HphI	GGTGA	4 cut(s)	141, 157, 520, 598
Hpy166II	GTNNAC	2 cut(s)	6, 634
Hpy188I	TCNGA	6 cut(s)	274, 447, 497, 642, 664, 683
Hpy188III	TCNNGA	2 cut(s)	370, 451
Hpy8I	GTNNAC	2 cut(s)	6, 634
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	3 cut(s)	574, 695, 717
HpyCH4IV	ACGT	3 cut(s)	8, 519, 630
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 329, 424, 521
HpyF3I	CTNAG	4 cut(s)	350, 494, 639, 663
HpySE526I	ACGT	3 cut(s)	8, 519, 630
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	179, 247, 373, 400, 652
HspAI	GCGC	3 cut(s)	481, 551, 561
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
KspI	CCGCGG	2 cut(s)	385, 585
Kzo9I	GATC	5 cut(s)	202, 447, 537, 678, 707
LmnI	GCTCC	2 cut(s)	261, 291
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	149
MaeII	ACGT	3 cut(s)	8, 519, 630
MaeIII	GTNAC	3 cut(s)	124, 147, 508
MalI	GATC	5 cut(s)	204, 449, 539, 680, 709
MboI	GATC	5 cut(s)	202, 447, 537, 678, 707
MboII	GAAGA	3 cut(s)	22, 178, 541
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	7 cut(s)	8, 63, 217, 297, 408, 420, 478
MlyI	GAGTC	2 cut(s)	80, 539
MmeI	TCCRAC	2 cut(s)	216, 297
MroNI	GCCGGC	1 cut(s)	427
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	2 cut(s)	384, 584
MspI	CCGG	6 cut(s)	115, 152, 232, 259, 333, 428
MspR9I	CCNGG	5 cut(s)	54, 116, 211, 232, 334
MvaI	CCWGG	2 cut(s)	54, 211
MvnI	CGCG	4 cut(s)	384, 483, 563, 584
MwoI	GCNNNNNNNGC	4 cut(s)	292, 329, 424, 521
NaeI	GCCGGC	1 cut(s)	429
NciI	CCSGG	3 cut(s)	116, 232, 334
NdeII	GATC	5 cut(s)	202, 447, 537, 678, 707
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	5 cut(s)	179, 247, 373, 400, 652
NlaIV	GGNNCC	2 cut(s)	215, 263
NmeAIII	GCCGAG	3 cut(s)	457, 495, 527
NmuCI	GTSAC	3 cut(s)	124, 147, 508
PagI	TCATGA	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	643
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	121, 157, 307, 331, 386, 583
PleI	GAGTC	2 cut(s)	80, 539
PmaCI	CACGTG	1 cut(s)	631
PmlI	CACGTG	1 cut(s)	631
PpsI	GAGTC	2 cut(s)	80, 539
Ppu21I	YACGTR	1 cut(s)	631
Psp124BI	GAGCTC	2 cut(s)	408, 420
Psp6I	CCWGG	2 cut(s)	52, 209
PspCI	CACGTG	1 cut(s)	631
PspGI	CCWGG	2 cut(s)	52, 209
PspN4I	GGNNCC	2 cut(s)	215, 263
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	6 cut(s)	50, 117, 213, 214, 234, 261
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	2 cut(s)	635, 697
RsaNI	GTAC	2 cut(s)	634, 696
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	2 cut(s)	408, 420
SacII	CCGCGG	2 cut(s)	385, 585
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	6 cut(s)	120, 156, 306, 330, 385, 582
Sau3AI	GATC	5 cut(s)	202, 447, 537, 678, 707
Sau96I	GGNCC	6 cut(s)	50, 117, 213, 214, 234, 261
SchI	GAGTC	2 cut(s)	80, 539
ScrFI	CCNGG	5 cut(s)	54, 116, 211, 232, 334
SduI	GDGCHC	7 cut(s)	8, 63, 217, 297, 408, 420, 478
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	716
Sfr303I	CCGCGG	2 cut(s)	385, 585
SgrBI	CCGCGG	2 cut(s)	385, 585
SinI	GGWCC	2 cut(s)	234, 261
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SstI	GAGCTC	2 cut(s)	408, 420
StyD4I	CCNGG	5 cut(s)	52, 114, 209, 230, 332
TaaI	ACNGT	3 cut(s)	574, 695, 717
TaiI	ACGT	3 cut(s)	11, 522, 633
TaqI	TCGA	6 cut(s)	84, 408, 414, 450, 543, 710
TauI	GCSGC	5 cut(s)	122, 308, 332, 387, 584
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	3 cut(s)	124, 147, 508
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	3 cut(s)	124, 147, 508
TspDTI	ATGAA	4 cut(s)	22, 268, 328, 379
TspRI	CASTG	1 cut(s)	531
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	2 cut(s)	234, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.