Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008033

Physical Location & Seq

Genomic Coordinates Reverse (-)

24439652 .. 24441073

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACGTCATCATCGTACCTCCGATTTGCGATCGCCGTCGTAGCTTTCCTCTCAATCACCACCATCACCACCGCACGTCCTTGCAAAACCTTCCTAATCTCCTCATATTCCCTCTCAATAACCCCAGAAAACCCTAACCTCGAATCCGATTTCACCTCCACACGATTCGTCACCGTTTTCACAATCCGTCGTCTAAATCCTCACCACGTGGTTCCTTTCTTCGTCAATCGTCGTCACGAGAAGCCACAGATCCAATCGGATCGTTCCCTCCCTTTGATCTCTGATAACATCAATTCGTTTAGAGATCGAACCAGAGATATTCTTAGCGTCGTCGTCGCGCTTTTGTTCGGTGTTGGTTGTGGTGCTTTAACCGCTGCTACTATGTATCTTGTTTGGGCTCTTGTTGTGAATCGTCAAAGCTATGATTTTGAGGAAGAAGAAGATGATTATGAGAATGATGAATCTGATGCTGCTAGCTTGAAGAAATTGGGTTATGTTAAGATTCCAGCTCCAGCTCCTGCTCCTGTGAAGGAAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.12

Weight (kDa)

5.92

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65720
malus_domestica	MD03G1273600.v1.1 MD09G1282600.v1.1 MD17G1272400.v1.1
prunus_persica	Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1
pyrus_communis	pycom09g19060 pycom17g27130
rosa_laevigata	RLG00000014595 RLG00000022985 RLG00000035004
rosa_multiflora	Rmu_sc0008132.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261030 Rroxscaffold_6G00394590
rosa_rugosa	Rorug01G0253400 Rorug03G0235800 Rorug06G0082900
rosa_samantha	Rh3AG284000 Rh3BG320400 Rh3CG318700 Rh3DG317600
rosa_wichuraiana	Rw3G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccII	CGCG	1 cut(s)	338
AciI	CCGC	2 cut(s)	72, 372
AclWI	GGATC	2 cut(s)	244, 267
AcvI	CACGTG	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	481
AjiI	CACGTC	1 cut(s)	77
AluBI	AGCT	6 cut(s)	44, 420, 477, 509, 515, 536
AluI	AGCT	6 cut(s)	44, 420, 477, 509, 515, 536
AlwI	GGATC	2 cut(s)	244, 267
AlwNI	CAGNNNCTG	1 cut(s)	518
ApeKI	GCWGC	3 cut(s)	374, 470, 536
AsiSI	GCGATCGC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	340
AsuHPI	GGTGA	5 cut(s)	49, 58, 145, 163, 194
AsuNHI	GCTAGC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	361, 457, 523
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	474
BisI	GCNGC	3 cut(s)	375, 471, 537
BlsI	GCNGC	3 cut(s)	376, 472, 538
BmgBI	CACGTC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	361, 457, 523
Bsh1236I	CGCG	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	5 cut(s)	30, 249, 259, 276, 304
BspACI	CCGC	2 cut(s)	72, 372
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	213
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	244, 267
BssMI	GATC	5 cut(s)	30, 249, 259, 276, 304
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	5 cut(s)	33, 252, 262, 279, 307
BstMBI	GATC	5 cut(s)	30, 249, 259, 276, 304
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 371
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	361, 457, 523
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	1 cut(s)	340
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	8 cut(s)	44, 244, 398, 420, 477, 509, 515, 536
CviKI_1	RGCY	8 cut(s)	44, 244, 398, 420, 477, 509, 515, 536
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	5 cut(s)	32, 251, 261, 278, 306
DpnII	GATC	5 cut(s)	30, 249, 259, 276, 304
DraIII	CACNNNGTG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	400
Eco72I	CACGTG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	400
FaiI	YATR	5 cut(s)	106, 383, 423, 450, 495
Fnu4HI	GCNGC	3 cut(s)	375, 471, 537
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	3 cut(s)	375, 471, 537
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	3 cut(s)	375, 471, 537
GsuI	CTGGAG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	5 cut(s)	143, 165, 409, 461, 502
HphI	GGTGA	5 cut(s)	49, 58, 145, 163, 194
Hpy188I	TCNGA	5 cut(s)	23, 148, 259, 283, 466
Hpy188III	TCNNGA	1 cut(s)	236
Hpy99I	CGWCG	6 cut(s)	41, 192, 234, 332, 335, 338
HpyAV	CCTTC	2 cut(s)	100, 523
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	3 cut(s)	5, 76, 207
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 371
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	3 cut(s)	5, 76, 207
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	5 cut(s)	30, 249, 259, 276, 304
LmnI	GCTCC	3 cut(s)	514, 520, 526
LpnPI	CCDG	6 cut(s)	138, 325, 519, 525, 531, 537
Lsp1109I	GCAGC	3 cut(s)	361, 457, 523
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	3 cut(s)	5, 76, 207
MaeIII	GTNAC	2 cut(s)	169, 233
MalI	GATC	5 cut(s)	32, 251, 261, 278, 306
MboI	GATC	5 cut(s)	30, 249, 259, 276, 304
MboII	GAAGA	5 cut(s)	211, 446, 449, 452, 493
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	292, 485
MnlI	CCTC	9 cut(s)	29, 59, 112, 122, 149, 166, 210, 278, 424
MseI	TTAA	2 cut(s)	368, 498
MspA1I	CMGCKG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	41, 371
NdeII	GATC	5 cut(s)	30, 249, 259, 276, 304
NheI	GCTAGC	1 cut(s)	473
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	169, 233
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	5 cut(s)	143, 165, 409, 461, 502
PkrI	GCNGC	3 cut(s)	376, 472, 538
Ple19I	CGATCG	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	208
PmlI	CACGTG	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	208
PspCI	CACGTG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	33
RgaI	GCGATCGC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	368, 498
SatI	GCNGC	3 cut(s)	375, 471, 537
Sau3AI	GATC	5 cut(s)	30, 249, 259, 276, 304
SduI	GDGCHC	1 cut(s)	400
SfaAI	GCGATCGC	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	457
SgfI	GCGATCGC	1 cut(s)	33
Sse9I	AATT	2 cut(s)	292, 485
SsiI	CCGC	2 cut(s)	72, 372
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	3 cut(s)	8, 79, 210
TaqI	TCGA	2 cut(s)	141, 307
TasI	AATT	2 cut(s)	292, 485
TfiI	GAWTC	5 cut(s)	143, 165, 409, 461, 502
Tru1I	TTAA	2 cut(s)	368, 498
Tru9I	TTAA	2 cut(s)	368, 498
TseFI	GTSAC	2 cut(s)	169, 233
TseI	GCWGC	3 cut(s)	374, 470, 536
Tsp45I	GTSAC	2 cut(s)	169, 233
TspDTI	ATGAA	1 cut(s)	474
TspGWI	ACGGA	1 cut(s)	176
XspI	CTAG	1 cut(s)	474
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.