Rroxscaffold_3G00261030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008033
Physical Location & Seq
Forward (+)
55428151 .. 55428444
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261030.1

Sequence Viewer

Length: 294 bp
ATGCAGTCTCAACCCCAAATTGACTTGCCGCGTTGTAGCTTCCATGGAAACTTGCCTATGGTTATAAGACCCCTCCCCGATAGCTCGTTGATCCTCTCGATCTTGGCAATCTTGGCCACCATGAGGCCTTGCAAGACCCTCTTCATCTCCTACTACTCCGTCTCCCTCAAGCGCCTCCCCTCCTCTTCCTCCTCCTCGGGATTCATCACCATCGTCACCGAGATCGAGACCTCAAGCCCATCCGTTTTGACACCGGCGTTTTGGTCCACCGGACGCCGCCGCCTCCACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.79

Weight (kDa)

10.41

Isoelectric Point (pI)

79.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AccII CGCG 1 cut(s) 31
AciI CCGC 3 cut(s) 29, 277, 280
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 123
AluBI AGCT 2 cut(s) 39, 84
AluI AGCT 2 cut(s) 39, 84
Alw26I GTCTC 3 cut(s) 12, 166, 221
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 2 cut(s) 114, 125
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 199, 208
AvaI CYCGRG 1 cut(s) 196
AvaII GGWCC 1 cut(s) 264
BalI TGGCCA 1 cut(s) 116
BccI CCATC 2 cut(s) 218, 247
BcoDI GTCTC 3 cut(s) 12, 166, 221
BfoI RGCGCY 1 cut(s) 175
BisI GCNGC 3 cut(s) 29, 277, 280
BlsI GCNGC 3 cut(s) 30, 278, 281
Bme18I GGWCC 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 264
BpuEI CTTGAG 2 cut(s) 152, 217
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 43, 195
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 43, 195
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 123
BseRI GAGGAG 3 cut(s) 172, 181, 184
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 2 cut(s) 116, 127
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 2 cut(s) 254, 270
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 3 cut(s) 12, 166, 221
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 2 cut(s) 116, 127
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 196
Bsp143I GATC 3 cut(s) 90, 99, 222
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 3 cut(s) 29, 277, 280
BspANI GGCC 2 cut(s) 116, 127
BspFNI CGCG 1 cut(s) 31
BspPI GGATC 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 43, 195
BssMI GATC 3 cut(s) 90, 99, 222
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 146, 190
BstACI GRCGYC 1 cut(s) 274
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 3 cut(s) 93, 102, 225
BstMAI GTCTC 3 cut(s) 12, 166, 221
BstMBI GATC 3 cut(s) 90, 99, 222
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstUI CGCG 1 cut(s) 31
BsuRI GGCC 2 cut(s) 116, 127
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 239
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 264
CseI GACGC 1 cut(s) 282
CviAII CATG 2 cut(s) 44, 121
CviJI RGCY 5 cut(s) 39, 84, 116, 127, 237
CviKI_1 RGCY 5 cut(s) 39, 84, 116, 127, 237
DpnI GATC 3 cut(s) 92, 101, 224
DpnII GATC 3 cut(s) 90, 99, 222
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 146, 190
EarI CTCTTC 2 cut(s) 146, 190
Eco130I CCWWGG 1 cut(s) 43
Eco147I AGGCCT 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 2 cut(s) 47, 124
FaiI YATR 4 cut(s) 45, 59, 65, 122
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 2 cut(s) 43, 120
Fnu4HI GCNGC 3 cut(s) 29, 277, 280
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 3 cut(s) 29, 277, 280
GlaI GCGC 1 cut(s) 173
GluI GCNGC 3 cut(s) 29, 277, 280
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 2 cut(s) 116, 127
HapII CCGG 2 cut(s) 254, 270
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 2 cut(s) 47, 124
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 1 cut(s) 201
HpaII CCGG 2 cut(s) 254, 270
HphI GGTGA 2 cut(s) 199, 208
Hpy166II GTNNAC 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 97, 198, 226
Hpy8I GTNNAC 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 4, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 2 cut(s) 47, 124
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 90, 99, 222
LpnPI CCDG 2 cut(s) 267, 283
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 92, 101, 224
MboI GATC 3 cut(s) 90, 99, 222
MboII GAAGA 2 cut(s) 133, 177
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 1 cut(s) 18
MluNI TGGCCA 1 cut(s) 116
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 2 cut(s) 254, 270
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 43
NdeII GATC 3 cut(s) 90, 99, 222
NlaIII CATG 2 cut(s) 47, 124
NmuCI GTSAC 1 cut(s) 214
PceI AGGCCT 1 cut(s) 127
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 3 cut(s) 30, 278, 281
PsiI TTATAA 1 cut(s) 65
PspPI GGNCC 1 cut(s) 264
SatI GCNGC 3 cut(s) 29, 277, 280
Sau3AI GATC 3 cut(s) 90, 99, 222
Sau96I GGNCC 1 cut(s) 264
SetI ASST 3 cut(s) 41, 86, 233
SgrAI CRCCGGYG 1 cut(s) 253
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 167, 232
SmoI CTYRAG 2 cut(s) 167, 232
Sse9I AATT 1 cut(s) 18
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 3 cut(s) 29, 277, 280
StuI AGGCCT 1 cut(s) 127
StyI CCWWGG 1 cut(s) 43
TaqI TCGA 2 cut(s) 98, 225
TasI AATT 1 cut(s) 18
TauI GCSGC 3 cut(s) 31, 279, 282
TfiI GAWTC 1 cut(s) 201
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 133, 193
TspGWI ACGGA 2 cut(s) 148, 232
VpaK11BI GGWCC 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.