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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G65720 |
| malus_domestica | MD03G1273600.v1.1 MD09G1282600.v1.1 MD17G1272400.v1.1 |
| prunus_persica | Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 |
| pyrus_communis | pycom09g19060 pycom17g27130 |
| rosa_laevigata | RLG00000014595 RLG00000022985 RLG00000035004 |
| rosa_multiflora | Rmu_sc0008132.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00261030 Rroxscaffold_6G00394590 |
| rosa_rugosa | Rorug01G0253400 Rorug03G0235800 Rorug06G0082900 |
| rosa_samantha | Rh3AG284000 Rh3BG320400 Rh3CG318700 Rh3DG317600 |
| rosa_wichuraiana | Rw3G025180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 391 |
| AccB1I | GGYRCC | 3 cut(s) | 673, 834, 1702 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1712, 2613 |
| AccI | GTMKAC | 2 cut(s) | 1803, 2331 |
| AccIII | TCCGGA | 2 cut(s) | 1162, 2635 |
| AciI | CCGC | 4 cut(s) | 466, 1523, 1861, 2137 |
| AclWI | GGATC | 7 cut(s) | 28, 583, 630, 1019, 2501, 2514, 2678 |
| AcoI | YGGCCR | 2 cut(s) | 1752, 1964 |
| AcsI | RAATTY | 6 cut(s) | 949, 1855, 2022, 2244, 2567, 2707 |
| AcuI | CTGAAG | 4 cut(s) | 461, 1125, 1911, 2505 |
| AdeI | CACNNNGTG | 1 cut(s) | 1997 |
| AfaI | GTAC | 5 cut(s) | 583, 755, 1647, 1695, 1710 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 17, 227, 263, 769, 1125, 1663, 1712, 1994, 2613 |
| AflIII | ACRYGT | 1 cut(s) | 750 |
| AjnI | CCWGG | 2 cut(s) | 870, 1993 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1562, 1594 |
| AleI | CACNNNNGTG | 1 cut(s) | 2346 |
| Alw21I | GWGCWC | 2 cut(s) | 1143, 2383 |
| Alw26I | GTCTC | 5 cut(s) | 119, 306, 1730, 1805, 1870 |
| AlwI | GGATC | 7 cut(s) | 28, 583, 630, 1019, 2501, 2514, 2678 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1880 |
| Aor13HI | TCCGGA | 2 cut(s) | 1162, 2635 |
| AoxI | GGCC | 3 cut(s) | 1752, 1964, 2033 |
| ApoI | RAATTY | 6 cut(s) | 949, 1855, 2022, 2244, 2567, 2707 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2493 |
| AspLEI | GCGC | 1 cut(s) | 2679 |
| AspS9I | GGNCC | 2 cut(s) | 2168, 2434 |
| AsuHPI | GGTGA | 5 cut(s) | 709, 1570, 1727, 1745, 2546 |
| AvaII | GGWCC | 2 cut(s) | 2168, 2434 |
| AxyI | CCTNAGG | 1 cut(s) | 1053 |
| BalI | TGGCCA | 1 cut(s) | 1754 |
| BamHI | GGATCC | 1 cut(s) | 2506 |
| BanI | GGYRCC | 3 cut(s) | 673, 834, 1702 |
| BanII | GRGCYC | 1 cut(s) | 2383 |
| BbsI | GAAGAC | 1 cut(s) | 2070 |
| Bbv12I | GWGCWC | 2 cut(s) | 1143, 2383 |
| BbvCI | CCTCAGC | 3 cut(s) | 1359, 1371, 1554 |
| BccI | CCATC | 2 cut(s) | 2089, 2159 |
| BciT130I | CCWGG | 2 cut(s) | 872, 1995 |
| BciVI | GTATCC | 1 cut(s) | 820 |
| BclI | TGATCA | 1 cut(s) | 2770 |
| BcoDI | GTCTC | 5 cut(s) | 119, 306, 1730, 1805, 1870 |
| BfaI | CTAG | 5 cut(s) | 626, 1263, 1286, 1409, 1697 |
| BfuI | GTATCC | 1 cut(s) | 820 |
| Bme1390I | CCNGG | 2 cut(s) | 872, 1995 |
| Bme18I | GGWCC | 2 cut(s) | 2168, 2434 |
| BmgT120I | GGNCC | 2 cut(s) | 2168, 2434 |
| BmiI | GGNNCC | 6 cut(s) | 675, 836, 1704, 1973, 2436, 2508 |
| BmrFI | CCNGG | 2 cut(s) | 872, 1995 |
| BmrI | ACTGGG | 1 cut(s) | 1626 |
| BmsI | GCATC | 3 cut(s) | 652, 1611, 1930 |
| BmuI | ACTGGG | 1 cut(s) | 1626 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1955 |
| BpiI | GAAGAC | 1 cut(s) | 2070 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1486, 1518 |
| BpmI | CTGGAG | 1 cut(s) | 783 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1314, 1359, 1371, 1554 |
| BpuEI | CTTGAG | 1 cut(s) | 1829 |
| BsaAI | YACGTR | 2 cut(s) | 581, 881 |
| BsaBI | GATNNNNATC | 1 cut(s) | 593 |
| BsaI | GGTCTC | 3 cut(s) | 1730, 1805, 1870 |
| BsaJI | CCNNGG | 4 cut(s) | 487, 1507, 1831, 1967 |
| BsaWI | WCCGGW | 2 cut(s) | 1162, 2635 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 516, 546 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 17, 227, 263, 769, 1125, 1663, 1712, 1994, 2613 |
| Bse1I | ACTGG | 6 cut(s) | 378, 427, 838, 1632, 1706, 1755 |
| Bse21I | CCTNAGG | 1 cut(s) | 1053 |
| Bse3DI | GCAATG | 2 cut(s) | 75, 1204 |
| Bse8I | GATNNNNATC | 1 cut(s) | 593 |
| BseAI | TCCGGA | 2 cut(s) | 1162, 2635 |
| BseBI | CCWGG | 2 cut(s) | 872, 1995 |
| BseDI | CCNNGG | 4 cut(s) | 487, 1507, 1831, 1967 |
| BseGI | GGATG | 7 cut(s) | 409, 667, 759, 778, 1945, 2151, 2185 |
| BseJI | GATNNNNATC | 1 cut(s) | 593 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 17, 227, 263, 769, 1125, 1663, 1712, 1994, 2613 |
| BseMI | GCAATG | 2 cut(s) | 75, 1204 |
| BseMII | CTCAG | 7 cut(s) | 114, 387, 1044, 1350, 1362, 1383, 1545 |
| BseNI | ACTGG | 6 cut(s) | 378, 427, 838, 1632, 1706, 1755 |
| BseRI | GAGGAG | 9 cut(s) | 413, 1304, 1307, 1349, 1352, 1376, 1388, 1685, 1865 |
| BsgI | GTGCAG | 4 cut(s) | 1518, 1646, 1974, 2079 |
| Bsh1285I | CGRYCG | 1 cut(s) | 80 |
| BshFI | GGCC | 3 cut(s) | 1754, 1966, 2035 |
| BshNI | GGYRCC | 3 cut(s) | 673, 834, 1702 |
| BsiEI | CGRYCG | 1 cut(s) | 80 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1143, 2383 |
| BsiSI | CCGG | 3 cut(s) | 107, 1163, 2636 |
| BsiWI | CGTACG | 1 cut(s) | 581 |
| BslFI | GGGAC | 4 cut(s) | 962, 1432, 1963, 2420 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 17, 227, 263, 769, 1125, 1663, 1712, 1994, 2613 |
| BsmAI | GTCTC | 5 cut(s) | 119, 306, 1730, 1805, 1870 |
| BsmFI | GGGAC | 4 cut(s) | 962, 1432, 1963, 2420 |
| BsmI | GAATGC | 1 cut(s) | 2631 |
| BsnI | GGCC | 3 cut(s) | 1754, 1966, 2035 |
| Bso31I | GGTCTC | 3 cut(s) | 1730, 1805, 1870 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1143, 2383 |
| Bsp13I | TCCGGA | 2 cut(s) | 1162, 2635 |
| Bsp1407I | TGTACA | 1 cut(s) | 753 |
| Bsp143I | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| Bsp19I | CCATGG | 2 cut(s) | 1507, 1831 |
| BspACI | CCGC | 4 cut(s) | 466, 1523, 1861, 2137 |
| BspANI | GGCC | 3 cut(s) | 1754, 1966, 2035 |
| BspCNI | CTCAG | 7 cut(s) | 115, 388, 1045, 1351, 1363, 1384, 1546 |
| BspEI | TCCGGA | 2 cut(s) | 1162, 2635 |
| BspLI | GGNNCC | 6 cut(s) | 675, 836, 1704, 1973, 2436, 2508 |
| BspPI | GGATC | 7 cut(s) | 28, 583, 630, 1019, 2501, 2514, 2678 |
| BspT107I | GGYRCC | 3 cut(s) | 673, 834, 1702 |
| BspTNI | GGTCTC | 3 cut(s) | 1730, 1805, 1870 |
| BsrDI | GCAATG | 2 cut(s) | 75, 1204 |
| BsrGI | TGTACA | 1 cut(s) | 753 |
| BsrI | ACTGG | 6 cut(s) | 378, 427, 838, 1632, 1706, 1755 |
| BssECI | CCNNGG | 4 cut(s) | 487, 1507, 1831, 1967 |
| BssMI | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| BssT1I | CCWWGG | 2 cut(s) | 1507, 1831 |
| Bst2UI | CCWGG | 2 cut(s) | 872, 1995 |
| Bst4CI | ACNGT | 7 cut(s) | 211, 505, 786, 966, 1650, 1765, 1882 |
| Bst6I | CTCTTC | 3 cut(s) | 1608, 1662, 1713 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2077 |
| BstAUI | TGTACA | 1 cut(s) | 753 |
| BstBAI | YACGTR | 2 cut(s) | 581, 881 |
| BstC8I | GCNNGC | 2 cut(s) | 2383, 2629 |
| BstDSI | CCRYGG | 2 cut(s) | 1507, 1831 |
| BstF5I | GGATG | 7 cut(s) | 409, 667, 759, 778, 1945, 2151, 2185 |
| BstHHI | GCGC | 1 cut(s) | 2679 |
| BstKTI | GATC | 8 cut(s) | 23, 80, 591, 625, 1014, 2509, 2673, 2773 |
| BstMAI | GTCTC | 5 cut(s) | 119, 306, 1730, 1805, 1870 |
| BstMBI | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| BstMCI | CGRYCG | 1 cut(s) | 80 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 682, 893, 1529, 2077, 2789 |
| BstNI | CCWGG | 2 cut(s) | 872, 1995 |
| BstNSI | RCATGY | 2 cut(s) | 1358, 2801 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1955 |
| BstSCI | CCNGG | 2 cut(s) | 870, 1993 |
| BstV2I | GAAGAC | 1 cut(s) | 2070 |
| BstX2I | RGATCY | 3 cut(s) | 588, 622, 2506 |
| BstYI | RGATCY | 3 cut(s) | 588, 622, 2506 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1053 |
| BsuI | GTATCC | 1 cut(s) | 820 |
| BsuRI | GGCC | 3 cut(s) | 1754, 1966, 2035 |
| BtgI | CCRYGG | 2 cut(s) | 1507, 1831 |
| BtgZI | GCGATG | 1 cut(s) | 2512 |
| BtsCI | GGATG | 7 cut(s) | 409, 667, 759, 778, 1945, 2151, 2185 |
| BtsIMutI | CAGTG | 3 cut(s) | 501, 1639, 1804 |
| Cac8I | GCNNGC | 2 cut(s) | 2383, 2629 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1880 |
| CfoI | GCGC | 1 cut(s) | 2679 |
| Cfr13I | GGNCC | 2 cut(s) | 2168, 2434 |
| CsiI | ACCWGGT | 1 cut(s) | 1993 |
| Csp6I | GTAC | 5 cut(s) | 582, 754, 1646, 1694, 1709 |
| CviQI | GTAC | 5 cut(s) | 582, 754, 1646, 1694, 1709 |
| DpnI | GATC | 8 cut(s) | 22, 79, 590, 624, 1013, 2508, 2672, 2772 |
| DpnII | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| DraI | TTTAAA | 1 cut(s) | 2103 |
| DraIII | CACNNNGTG | 1 cut(s) | 1997 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 391 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 391 |
| EaeI | YGGCCR | 2 cut(s) | 1752, 1964 |
| Eam1104I | CTCTTC | 3 cut(s) | 1608, 1662, 1713 |
| EarI | CTCTTC | 3 cut(s) | 1608, 1662, 1713 |
| Ecl136II | GAGCTC | 1 cut(s) | 2381 |
| Eco130I | CCWWGG | 2 cut(s) | 1507, 1831 |
| Eco24I | GRGCYC | 1 cut(s) | 2383 |
| Eco31I | GGTCTC | 3 cut(s) | 1730, 1805, 1870 |
| Eco47I | GGWCC | 2 cut(s) | 2168, 2434 |
| Eco53kI | GAGCTC | 1 cut(s) | 2381 |
| Eco57I | CTGAAG | 4 cut(s) | 461, 1125, 1911, 2505 |
| Eco81I | CCTNAGG | 1 cut(s) | 1053 |
| EcoICRI | GAGCTC | 1 cut(s) | 2381 |
| EcoRII | CCWGG | 2 cut(s) | 870, 1993 |
| EcoT14I | CCWWGG | 2 cut(s) | 1507, 1831 |
| EcoT22I | ATGCAT | 2 cut(s) | 667, 2117 |
| EcoT38I | GRGCYC | 1 cut(s) | 2383 |
| ErhI | CCWWGG | 2 cut(s) | 1507, 1831 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 964, 996, 2051, 2083 |
| FaqI | GGGAC | 4 cut(s) | 962, 1432, 1963, 2420 |
| FauI | CCCGC | 1 cut(s) | 1854 |
| FbaI | TGATCA | 1 cut(s) | 2770 |
| FblI | GTMKAC | 2 cut(s) | 1803, 2331 |
| FokI | GGATG | 7 cut(s) | 416, 674, 746, 785, 1952, 2138, 2172 |
| FriOI | GRGCYC | 1 cut(s) | 2383 |
| FspBI | CTAG | 5 cut(s) | 626, 1263, 1286, 1409, 1697 |
| GlaI | GCGC | 1 cut(s) | 2678 |
| GsuI | CTGGAG | 1 cut(s) | 783 |
| HaeIII | GGCC | 3 cut(s) | 1754, 1966, 2035 |
| HapII | CCGG | 3 cut(s) | 107, 1163, 2636 |
| HhaI | GCGC | 1 cut(s) | 2679 |
| Hin6I | GCGC | 1 cut(s) | 2677 |
| HinP1I | GCGC | 1 cut(s) | 2677 |
| HincII | GTYRAC | 4 cut(s) | 360, 744, 1804, 2332 |
| HindII | GTYRAC | 4 cut(s) | 360, 744, 1804, 2332 |
| HindIII | AAGCTT | 1 cut(s) | 1893 |
| HinfI | GANTC | 6 cut(s) | 650, 1159, 1445, 2086, 2476, 2523 |
| HpaI | GTTAAC | 1 cut(s) | 744 |
| HpaII | CCGG | 3 cut(s) | 107, 1163, 2636 |
| HphI | GGTGA | 5 cut(s) | 709, 1570, 1727, 1745, 2546 |
| Hpy166II | GTNNAC | 5 cut(s) | 360, 744, 754, 1804, 2332 |
| Hpy188I | TCNGA | 7 cut(s) | 234, 270, 306, 397, 488, 970, 1132 |
| Hpy188III | TCNNGA | 9 cut(s) | 626, 733, 800, 1163, 1485, 1889, 2552, 2636, 2813 |
| Hpy8I | GTNNAC | 5 cut(s) | 360, 744, 754, 1804, 2332 |
| HpyCH4III | ACNGT | 7 cut(s) | 211, 505, 786, 966, 1650, 1765, 1882 |
| HpyCH4IV | ACGT | 4 cut(s) | 580, 750, 880, 2462 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 682, 893, 1529, 2077, 2789 |
| HpySE526I | ACGT | 4 cut(s) | 580, 750, 880, 2462 |
| HspAI | GCGC | 1 cut(s) | 2677 |
| Kpn2I | TCCGGA | 2 cut(s) | 1162, 2635 |
| Ksp22I | TGATCA | 1 cut(s) | 2770 |
| KspAI | GTTAAC | 1 cut(s) | 744 |
| Kzo9I | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| LmnI | GCTCC | 3 cut(s) | 1165, 1432, 2638 |
| LweI | GCATC | 3 cut(s) | 652, 1611, 1930 |
| MabI | ACCWGGT | 1 cut(s) | 1993 |
| MaeI | CTAG | 5 cut(s) | 626, 1263, 1286, 1409, 1697 |
| MaeII | ACGT | 4 cut(s) | 580, 750, 880, 2462 |
| MaeIII | GTNAC | 3 cut(s) | 454, 930, 1459 |
| MalI | GATC | 8 cut(s) | 22, 79, 590, 624, 1013, 2508, 2672, 2772 |
| MboI | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| MfeI | CAATTG | 1 cut(s) | 111 |
| MflI | RGATCY | 3 cut(s) | 588, 622, 2506 |
| MhlI | GDGCHC | 2 cut(s) | 1143, 2383 |
| MlsI | TGGCCA | 1 cut(s) | 1754 |
| MluNI | TGGCCA | 1 cut(s) | 1754 |
| MlyI | GAGTC | 2 cut(s) | 1454, 2517 |
| MmeI | TCCRAC | 5 cut(s) | 212, 248, 357, 2220, 2393 |
| Mox20I | TGGCCA | 1 cut(s) | 1754 |
| Mph1103I | ATGCAT | 2 cut(s) | 667, 2117 |
| MroI | TCCGGA | 2 cut(s) | 1162, 2635 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2493 |
| MscI | TGGCCA | 1 cut(s) | 1754 |
| MslI | CAYNNNNRTG | 2 cut(s) | 569, 2346 |
| Msp20I | TGGCCA | 1 cut(s) | 1754 |
| MspA1I | CMGCKG | 2 cut(s) | 2256, 2483 |
| MspI | CCGG | 3 cut(s) | 107, 1163, 2636 |
| MspR9I | CCNGG | 2 cut(s) | 872, 1995 |
| MunI | CAATTG | 1 cut(s) | 111 |
| Mva1269I | GAATGC | 1 cut(s) | 2631 |
| MvaI | CCWGG | 2 cut(s) | 872, 1995 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 682, 893, 1529, 2077, 2789 |
| NcoI | CCATGG | 2 cut(s) | 1507, 1831 |
| NdeII | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| NlaIV | GGNNCC | 6 cut(s) | 675, 836, 1704, 1973, 2436, 2508 |
| NmeAIII | GCCGAG | 2 cut(s) | 1000, 1992 |
| NmuCI | GTSAC | 2 cut(s) | 930, 1459 |
| NsiI | ATGCAT | 2 cut(s) | 667, 2117 |
| NspI | RCATGY | 2 cut(s) | 1358, 2801 |
| OliI | CACNNNNGTG | 1 cut(s) | 2346 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2328 |
| PctI | GAATGC | 1 cut(s) | 2631 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2493 |
| PfeI | GAWTC | 4 cut(s) | 650, 1159, 2086, 2476 |
| Pfl23II | CGTACG | 1 cut(s) | 581 |
| PflFI | GACNNNGTC | 2 cut(s) | 2318, 2464 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1712, 2613 |
| PfoI | TCCNGGA | 1 cut(s) | 870 |
| Ple19I | CGATCG | 1 cut(s) | 80 |
| PleI | GAGTC | 2 cut(s) | 1453, 2517 |
| PpsI | GAGTC | 2 cut(s) | 1453, 2517 |
| Ppu21I | YACGTR | 2 cut(s) | 581, 881 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1955 |
| Psp124BI | GAGCTC | 1 cut(s) | 2383 |
| Psp6I | CCWGG | 2 cut(s) | 870, 1993 |
| PspGI | CCWGG | 2 cut(s) | 870, 1993 |
| PspLI | CGTACG | 1 cut(s) | 581 |
| PspN4I | GGNNCC | 6 cut(s) | 675, 836, 1704, 1973, 2436, 2508 |
| PspPI | GGNCC | 2 cut(s) | 2168, 2434 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1880 |
| PsuI | RGATCY | 3 cut(s) | 588, 622, 2506 |
| PsyI | GACNNNGTC | 2 cut(s) | 2318, 2464 |
| PvuI | CGATCG | 1 cut(s) | 80 |
| PvuII | CAGCTG | 2 cut(s) | 2256, 2483 |
| RsaI | GTAC | 5 cut(s) | 583, 755, 1647, 1695, 1710 |
| RsaNI | GTAC | 5 cut(s) | 582, 754, 1646, 1694, 1709 |
| RseI | CAYNNNNRTG | 2 cut(s) | 569, 2346 |
| SacI | GAGCTC | 1 cut(s) | 2383 |
| SalI | GTCGAC | 2 cut(s) | 1802, 2330 |
| Sau3AI | GATC | 8 cut(s) | 20, 77, 588, 622, 1011, 2506, 2670, 2770 |
| Sau96I | GGNCC | 2 cut(s) | 2168, 2434 |
| SchI | GAGTC | 2 cut(s) | 1454, 2517 |
| ScrFI | CCNGG | 2 cut(s) | 872, 1995 |
| SduI | GDGCHC | 2 cut(s) | 1143, 2383 |
| SexAI | ACCWGGT | 1 cut(s) | 1993 |
| SfaNI | GCATC | 3 cut(s) | 652, 1611, 1930 |
| SinI | GGWCC | 2 cut(s) | 2168, 2434 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 569, 2346 |
| SmlI | CTYRAG | 1 cut(s) | 1808 |
| SmoI | CTYRAG | 1 cut(s) | 1808 |
| SsiI | CCGC | 4 cut(s) | 466, 1523, 1861, 2137 |
| SspI | AATATT | 1 cut(s) | 1546 |
| SspMI | CTAG | 5 cut(s) | 626, 1263, 1286, 1409, 1697 |
| SstI | GAGCTC | 1 cut(s) | 2383 |
| StyD4I | CCNGG | 2 cut(s) | 870, 1993 |
| StyI | CCWWGG | 2 cut(s) | 1507, 1831 |
| TaaI | ACNGT | 7 cut(s) | 211, 505, 786, 966, 1650, 1765, 1882 |
| TaiI | ACGT | 4 cut(s) | 583, 753, 883, 2465 |
| TaqI | TCGA | 5 cut(s) | 80, 1605, 1803, 2084, 2331 |
| TatI | WGTACW | 3 cut(s) | 753, 1693, 1708 |
| TauI | GCSGC | 1 cut(s) | 468 |
| TfiI | GAWTC | 4 cut(s) | 650, 1159, 2086, 2476 |
| TscAI | CASTG | 3 cut(s) | 508, 1639, 1804 |
| TseFI | GTSAC | 2 cut(s) | 930, 1459 |
| Tsp45I | GTSAC | 2 cut(s) | 930, 1459 |
| TspGWI | ACGGA | 1 cut(s) | 2499 |
| TspRI | CASTG | 3 cut(s) | 508, 1639, 1804 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2318, 2464 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1712, 2613 |
| VpaK11BI | GGWCC | 2 cut(s) | 2168, 2434 |
| XapI | RAATTY | 6 cut(s) | 949, 1855, 2022, 2244, 2567, 2707 |
| XbaI | TCTAGA | 1 cut(s) | 625 |
| XceI | RCATGY | 2 cut(s) | 1358, 2801 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1747, 1762, 2162, 2500 |
| XmiI | GTMKAC | 2 cut(s) | 1803, 2331 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2493 |
| XspI | CTAG | 5 cut(s) | 626, 1263, 1286, 1409, 1697 |
| Zsp2I | ATGCAT | 2 cut(s) | 667, 2117 |