Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008033

Physical Location & Seq

Genomic Coordinates Forward (+)

718592 .. 722408

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G011600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGTCAACGAGTCAACGACCCCTCCTCATCGCCCTCCTAACCCTCTCGATCTTCGCAATCTCAGCCACCGCAACAAGGCCCTGCAAGACCCTCTTCATTTCCTCCTACTCATTCTCCCTCCGTCGTCTCCCCTCCTCCTCTTCCTCCTCCGGCTTCGTCACCGTCGTCACCGAGATCAGCCGACTCCGCCCCGTACGCTACGACGACCTTGTCCTCCAACCCCACGAAGAAGATGATAAGCGAACTCAGGCGGCGTCGCTCTTTCCCTTGATCGGAACGTCGTCGGCCTCCTCCTCGTCCTACGACCTCAACTCTCTCCGCGATCGCACCAGGGACATCCTGAGCATCGTCGTTTCCCTGCTCTTCGGCGTCGGCTGCGGCGCTCTCACCGCCGCTACCATGTACTTGGCTTGGTCCGTCTTCTTCAGTCGCTACGACAATGGCTCTGCGTCTTCCTTCGATGACGATTTCTATGACGCCAGCCCTAAGAAGATAGGTTATGTAAAGATTCCGGAGGTGGCCGCTGACTCCGTGCCAACACCACCGTCTCCAGTCAAGGAAGCCGCCGCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.71

Weight (kDa)

6.57

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65720
malus_domestica	MD03G1273600.v1.1 MD09G1282600.v1.1 MD17G1272400.v1.1
prunus_persica	Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1
pyrus_communis	pycom09g19060 pycom17g27130
rosa_laevigata	RLG00000014595 RLG00000022985 RLG00000035004
rosa_multiflora	Rmu_sc0008132.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261030 Rroxscaffold_6G00394590
rosa_rugosa	Rorug01G0253400 Rorug03G0235800 Rorug06G0082900
rosa_samantha	Rh3AG284000 Rh3BG320400 Rh3CG318700 Rh3DG317600
rosa_wichuraiana	Rw3G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccII	CGCG	2 cut(s)	324, 572
AccIII	TCCGGA	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	412
AcyI	GRCGYC	4 cut(s)	5, 257, 372, 480
AfaI	GTAC	2 cut(s)	198, 407
AfiI	CCNNNNNNNGG	2 cut(s)	78, 275
AjnI	CCWGG	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	134, 555
Aor13HI	TCCGGA	1 cut(s)	514
AoxI	GGCC	3 cut(s)	80, 288, 522
ApeKI	GCWGC	1 cut(s)	378
AsiSI	GCGATCGC	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	81, 417
AsuHPI	GGTGA	3 cut(s)	154, 163, 382
AvaII	GGWCC	1 cut(s)	417
BbsI	GAAGAC	2 cut(s)	415, 447
BbvI	GCAGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	134, 555
BfoI	RGCGCY	1 cut(s)	387
BisI	GCNGC	7 cut(s)	255, 379, 382, 396, 525, 567, 570
BlsI	GCNGC	7 cut(s)	256, 380, 383, 397, 526, 568, 571
Bme1390I	CCNGG	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	81, 417
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	357
BpiI	GAAGAC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	344
BsaHI	GRCGYC	4 cut(s)	5, 257, 372, 480
BsaJI	CCNNGG	2 cut(s)	333, 570
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 275
Bse1I	ACTGG	1 cut(s)	554
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	333, 570
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	78, 275
BseMII	CTCAG	3 cut(s)	78, 263, 335
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	6 cut(s)	17, 127, 130, 139, 283, 286
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	2 cut(s)	324, 572
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	82, 290, 524
BsiEI	CGRYCG	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	153, 515
BsiWI	CGTACG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	78, 275
BsmAI	GTCTC	2 cut(s)	134, 555
BsmBI	CGTCTC	2 cut(s)	134, 555
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	82, 290, 524
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	51, 177, 273, 325
BspANI	GGCC	3 cut(s)	82, 290, 524
BspCNI	CTCAG	3 cut(s)	77, 262, 336
BspEI	TCCGGA	1 cut(s)	514
BspFNI	CGCG	2 cut(s)	324, 572
BspQI	GCTCTTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	333, 570
BssMI	GATC	4 cut(s)	51, 177, 273, 325
BssNI	GRCGYC	4 cut(s)	5, 257, 372, 480
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	166, 549
Bst6I	CTCTTC	3 cut(s)	101, 148, 371
BstACI	GRCGYC	4 cut(s)	5, 257, 372, 480
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	4 cut(s)	64, 249, 344, 489
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	2 cut(s)	324, 572
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	4 cut(s)	54, 180, 276, 328
BstMAI	GTCTC	2 cut(s)	134, 555
BstMBI	GATC	4 cut(s)	51, 177, 273, 325
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 189, 198, 378, 392
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BstUI	CGCG	2 cut(s)	324, 572
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	2 cut(s)	415, 447
BstXI	CCANNNNNNTGG	1 cut(s)	409
BsuRI	GGCC	3 cut(s)	82, 290, 524
BtgI	CCRYGG	1 cut(s)	570
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	484
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	81, 417
Cfr42I	CCGCGG	1 cut(s)	573
CseI	GACGC	4 cut(s)	246, 361, 441, 488
Csp6I	GTAC	2 cut(s)	197, 406
CviAII	CATG	1 cut(s)	403
CviQI	GTAC	2 cut(s)	197, 406
DdeI	CTNAG	4 cut(s)	64, 249, 344, 489
DpnI	GATC	4 cut(s)	53, 179, 275, 327
DpnII	GATC	4 cut(s)	51, 177, 273, 325
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	3 cut(s)	101, 148, 371
EarI	CTCTTC	3 cut(s)	101, 148, 371
EciI	GGCGGA	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	332
Esp3I	CGTCTC	2 cut(s)	134, 555
FaeI	CATG	1 cut(s)	406
FaiI	YATR	3 cut(s)	404, 477, 504
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	7 cut(s)	255, 379, 382, 396, 525, 567, 570
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	7 cut(s)	255, 379, 382, 396, 525, 567, 570
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	7 cut(s)	255, 379, 382, 396, 525, 567, 570
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	82, 290, 524
HapII	CCGG	2 cut(s)	153, 515
HgaI	GACGC	4 cut(s)	246, 361, 441, 488
HhaI	GCGC	1 cut(s)	386
Hin1I	GRCGYC	4 cut(s)	5, 257, 372, 480
Hin1II	CATG	1 cut(s)	406
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	2 cut(s)	9, 17
HindII	GTYRAC	2 cut(s)	9, 17
HinfI	GANTC	4 cut(s)	13, 186, 511, 530
HpaII	CCGG	2 cut(s)	153, 515
HphI	GGTGA	3 cut(s)	154, 163, 382
Hpy166II	GTNNAC	2 cut(s)	9, 17
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	3 cut(s)	49, 343, 515
Hpy8I	GTNNAC	2 cut(s)	9, 17
Hpy99I	CGWCG	8 cut(s)	129, 170, 209, 262, 286, 289, 356, 377
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	166, 549
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 189, 198, 378, 392
HpyF3I	CTNAG	4 cut(s)	64, 249, 344, 489
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	4 cut(s)	5, 257, 372, 480
Hsp92II	CATG	1 cut(s)	406
HspAI	GCGC	1 cut(s)	384
Kpn2I	TCCGGA	1 cut(s)	514
KspI	CCGCGG	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	51, 177, 273, 325
LguI	GCTCTTC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	160, 169
MalI	GATC	4 cut(s)	53, 179, 275, 327
MboI	GATC	4 cut(s)	51, 177, 273, 325
MlyI	GAGTC	3 cut(s)	22, 180, 524
MmeI	TCCRAC	1 cut(s)	244
MroI	TCCGGA	1 cut(s)	514
MspA1I	CMGCKG	2 cut(s)	527, 572
MspI	CCGG	2 cut(s)	153, 515
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	2 cut(s)	324, 572
MwoI	GCNNNNNNNGC	5 cut(s)	65, 189, 198, 378, 392
NdeII	GATC	4 cut(s)	51, 177, 273, 325
NlaIII	CATG	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	160, 169
PciSI	GCTCTTC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	511
Pfl23II	CGTACG	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	7 cut(s)	256, 380, 383, 397, 526, 568, 571
Ple19I	CGATCG	1 cut(s)	328
PleI	GAGTC	3 cut(s)	21, 180, 524
PpsI	GAGTC	3 cut(s)	21, 180, 524
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspLI	CGTACG	1 cut(s)	196
PspPI	GGNCC	2 cut(s)	81, 417
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	328
RgaI	GCGATCGC	1 cut(s)	328
RsaI	GTAC	2 cut(s)	198, 407
RsaNI	GTAC	2 cut(s)	197, 406
SacII	CCGCGG	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	371
SatI	GCNGC	7 cut(s)	255, 379, 382, 396, 525, 567, 570
Sau3AI	GATC	4 cut(s)	51, 177, 273, 325
Sau96I	GGNCC	2 cut(s)	81, 417
SchI	GAGTC	3 cut(s)	22, 180, 524
ScrFI	CCNGG	1 cut(s)	334
SetI	ASST	5 cut(s)	213, 284, 312, 502, 522
SfaAI	GCGATCGC	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	357
Sfr303I	CCGCGG	1 cut(s)	573
SgfI	GCGATCGC	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	2 cut(s)	166, 549
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	50, 462
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	6 cut(s)	257, 384, 398, 527, 569, 572
TfiI	GAWTC	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	160, 169
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	2 cut(s)	160, 169
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	3 cut(s)	113, 409, 523
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.