RLG00000035004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008033
Physical Location & Seq
Reverse (-)
59045903 .. 59054268
8366 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035004

Sequence Viewer

Length: 957 bp
ATGCCGAAGGAAGGAGTTCCGGCCAGGTCGGGTTGGGGTGTAACTCTTTTACCCCATCGCACCCCTGATATATATATATATATATATATAGAGATATATATATATATCAATATATCATATATGTGTGTGTGTGTGTTTATATATATATATAGAGATATATATATATATATATATATATGTAGATGGTCTCCATGTCGCTTATATGCCAATAAGCCCGAGTTTGCTGCCAGTAGGATCGACGCCATTGGCTACCAGGTCGGCCACCTGCTCCAAGAGGGTCGATCATTAAAGGGGCTCTTCATAACTTGGGGATTACTTGCGCTGTTTCTGTGGACACATCCCATCTCCCTGCAGTCTCAACCCCAAATTGACTTGCTACGTTGCAGCTTCCATGAAAACTTGCCTATGGTTATAAGACCCCTCCTGATAGCTCTGCTGATCCTCTCGATCTTGGCAATCTCGGCCACCGTGAGGCCTTGCAAGACCCTCTTCATCTCCTACTACTCTGTCTCTCTCAGGCGCCTCCCCTCCTCTTCCTCCTCCTCGGGATTCGTCATCGTCGTCACCGAGATCAGAGACGTCAAGCCCATCCGTTTCGACGACGACGTTTTGGTCCAGCCGGACGACGCCGCCTCCACCGATGAGGCCCACCAGCCGCAGCAACCTCTCCTCCCTCTCTCCACCGACCTCAGCTCTCTGCGCGATCGGAAAAGGATGATGCACGCTCCTTCTGTTCGTAGTGATGGAAAAACGAGGAAGAAATCTCTGTCACGCTACATTGGTGCTGTTGGTCCGTTCATCCTCATCATCAATTGGAGCACTAGGACCAGGCTCCCATATTCCTCGTTCATAGTCATCCATGGGAAAGAAGAGAAATCATCGGAGAAGCCGCAAAGAGGCTCGATCATACCCCTGAATCATGTTGTGCTTGTGCTGATCTTGGTCGGTGGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

36.17

Weight (kDa)

9.31

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AarI CACCTGC 1 cut(s) 273
AasI GACNNNNNNGTC 1 cut(s) 611
AatII GACGTC 1 cut(s) 582
Acc36I ACCTGC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 519
AccII CGCG 1 cut(s) 702
AciI CCGC 3 cut(s) 630, 656, 890
AclWI GGATC 2 cut(s) 242, 433
AcoI YGGCCR 3 cut(s) 21, 259, 462
AcyI GRCGYC 4 cut(s) 240, 520, 579, 627
AfiI CCNNNNNNNGG 3 cut(s) 11, 471, 896
AjnI CCWGG 3 cut(s) 23, 252, 827
AluBI AGCT 3 cut(s) 387, 431, 693
AluI AGCT 3 cut(s) 387, 431, 693
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 4 cut(s) 192, 360, 514, 570
AlwI GGATC 2 cut(s) 242, 433
Ama87I CYCGRG 2 cut(s) 215, 544
AoxI GGCC 5 cut(s) 21, 259, 462, 473, 645
ApeKI GCWGC 3 cut(s) 224, 384, 658
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 3 cut(s) 322, 522, 702
AspS9I GGNCC 4 cut(s) 613, 646, 791, 825
AsuHPI GGTGA 1 cut(s) 556
AvaI CYCGRG 2 cut(s) 215, 544
AvaII GGWCC 3 cut(s) 613, 791, 825
BanI GGYRCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 821
BbvCI CCTCAGC 1 cut(s) 689
BbvI GCAGC 3 cut(s) 211, 396, 670
BccI CCATC 5 cut(s) 63, 177, 350, 596, 737
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 3 cut(s) 25, 254, 829
BcoDI GTCTC 4 cut(s) 192, 360, 514, 570
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 523
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 6 cut(s) 225, 385, 630, 656, 659, 890
BlsI GCNGC 6 cut(s) 226, 386, 631, 657, 660, 891
Bme1390I CCNGG 3 cut(s) 25, 254, 829
Bme18I GGWCC 3 cut(s) 613, 791, 825
BmeT110I CYCGRG 2 cut(s) 215, 544
BmgT120I GGNCC 4 cut(s) 613, 646, 791, 825
BmiI GGNNCC 2 cut(s) 521, 833
BmrFI CCNGG 3 cut(s) 25, 254, 829
BmsI GCATC 1 cut(s) 708
Bpu10I CCTNAGC 1 cut(s) 689
BsaHI GRCGYC 4 cut(s) 240, 520, 579, 627
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 543, 859
BsaXI ACNNNNNCTCC 4 cut(s) 617, 647, 654, 684
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 471, 896
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 3 cut(s) 25, 254, 829
BseDI CCNNGG 2 cut(s) 543, 859
BseGI GGATG 5 cut(s) 337, 588, 720, 798, 855
BseLI CCNNNNNNNGG 3 cut(s) 11, 471, 896
BseMII CTCAG 2 cut(s) 529, 703
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 4 cut(s) 520, 529, 532, 659
BseXI GCAGC 3 cut(s) 211, 396, 670
Bsh1236I CGCG 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 5 cut(s) 23, 261, 464, 475, 647
BshNI GGYRCC 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 821
BsiHKCI CYCGRG 2 cut(s) 215, 544
BsiSI CCGG 2 cut(s) 20, 620
BslI CCNNNNNNNGG 3 cut(s) 11, 471, 896
BsmAI GTCTC 4 cut(s) 192, 360, 514, 570
BsmBI CGTCTC 1 cut(s) 570
BsnI GGCC 5 cut(s) 23, 261, 464, 475, 647
Bso31I GGTCTC 1 cut(s) 192
BsoBI CYCGRG 2 cut(s) 215, 544
Bsp1286I GDGCHC 2 cut(s) 297, 821
Bsp143I GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
Bsp19I CCATGG 1 cut(s) 859
BspACI CCGC 3 cut(s) 630, 656, 890
BspANI GGCC 5 cut(s) 23, 261, 464, 475, 647
BspCNI CTCAG 2 cut(s) 528, 702
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 2 cut(s) 521, 833
BspMAI CTGCAG 1 cut(s) 354
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 2 cut(s) 242, 433
BspQI GCTCTTC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 519
BspTNI GGTCTC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 543, 859
BssMI GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
BssNI GRCGYC 4 cut(s) 240, 520, 579, 627
BssT1I CCWWGG 1 cut(s) 859
Bst2UI CCWGG 3 cut(s) 25, 254, 829
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 4 cut(s) 302, 494, 538, 864
BstACI GRCGYC 4 cut(s) 240, 520, 579, 627
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 2 cut(s) 515, 689
BstDSI CCRYGG 1 cut(s) 859
BstF5I GGATG 5 cut(s) 337, 588, 720, 798, 855
BstFNI CGCG 1 cut(s) 702
BstH2I RGCGCY 1 cut(s) 523
BstHHI GCGC 3 cut(s) 322, 522, 702
BstKTI GATC 8 cut(s) 237, 284, 441, 450, 573, 706, 906, 939
BstMAI GTCTC 4 cut(s) 192, 360, 514, 570
BstMBI GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 2 cut(s) 461, 699
BstNI CCWGG 3 cut(s) 25, 254, 829
BstSCI CCNGG 3 cut(s) 23, 252, 827
BstSFI CTRYAG 1 cut(s) 350
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 211, 396, 670
BsuRI GGCC 5 cut(s) 23, 261, 464, 475, 647
BtgI CCRYGG 1 cut(s) 859
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 5 cut(s) 337, 588, 720, 798, 855
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 723
CfoI GCGC 3 cut(s) 322, 522, 702
Cfr13I GGNCC 4 cut(s) 613, 646, 791, 825
CseI GACGC 2 cut(s) 248, 635
CsiI ACCWGGT 1 cut(s) 252
CviAII CATG 4 cut(s) 192, 392, 860, 920
DdeI CTNAG 2 cut(s) 515, 689
DinI GGCGCC 1 cut(s) 521
DpnI GATC 8 cut(s) 236, 283, 440, 449, 572, 705, 905, 938
DpnII GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
DrdI GACNNNNNNGTC 1 cut(s) 611
DseDI GACNNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 3 cut(s) 21, 259, 462
Eam1104I CTCTTC 4 cut(s) 302, 494, 538, 864
EarI CTCTTC 4 cut(s) 302, 494, 538, 864
Eco130I CCWWGG 1 cut(s) 859
Eco147I AGGCCT 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 192
Eco47I GGWCC 3 cut(s) 613, 791, 825
Eco88I CYCGRG 2 cut(s) 215, 544
EcoRII CCWGG 3 cut(s) 23, 252, 827
EcoT14I CCWWGG 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 297
EgeI GGCGCC 1 cut(s) 521
EheI GGCGCC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 859
Esp3I CGTCTC 1 cut(s) 570
FaeI CATG 4 cut(s) 195, 395, 863, 923
FalI AAGNNNNNCTT 4 cut(s) 281, 313, 473, 505
FatI CATG 4 cut(s) 191, 391, 859, 919
Fnu4HI GCNGC 6 cut(s) 225, 385, 630, 656, 659, 890
FokI GGATG 5 cut(s) 324, 575, 727, 785, 842
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 6 cut(s) 225, 385, 630, 656, 659, 890
FspBI CTAG 1 cut(s) 822
GlaI GCGC 3 cut(s) 321, 521, 701
GluI GCNGC 6 cut(s) 225, 385, 630, 656, 659, 890
HaeII RGCGCY 1 cut(s) 523
HaeIII GGCC 5 cut(s) 23, 261, 464, 475, 647
HapII CCGG 2 cut(s) 20, 620
HgaI GACGC 2 cut(s) 248, 635
HhaI GCGC 3 cut(s) 322, 522, 702
Hin1I GRCGYC 4 cut(s) 240, 520, 579, 627
Hin1II CATG 4 cut(s) 195, 395, 863, 923
Hin6I GCGC 3 cut(s) 320, 520, 700
HinP1I GCGC 3 cut(s) 320, 520, 700
HinfI GANTC 2 cut(s) 549, 916
HpaII CCGG 2 cut(s) 20, 620
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 575, 708, 883
Hpy188III TCNNGA 3 cut(s) 424, 445, 546
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 6 cut(s) 242, 563, 602, 605, 608, 629
HpyAV CCTTC 2 cut(s) 5, 738
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 3 cut(s) 379, 579, 606
HpyCH4V TGCA 4 cut(s) 352, 384, 480, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 699
HpyF3I CTNAG 2 cut(s) 515, 689
HpySE526I ACGT 3 cut(s) 379, 579, 606
Hsp92I GRCGYC 4 cut(s) 240, 520, 579, 627
Hsp92II CATG 4 cut(s) 195, 395, 863, 923
HspAI GCGC 3 cut(s) 320, 520, 700
KasI GGCGCC 1 cut(s) 519
Kzo9I GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 4 cut(s) 273, 730, 816, 837
Lsp1109I GCAGC 3 cut(s) 211, 396, 670
LweI GCATC 1 cut(s) 708
MabI ACCWGGT 1 cut(s) 252
MaeI CTAG 1 cut(s) 822
MaeII ACGT 3 cut(s) 379, 579, 606
MaeIII GTNAC 3 cut(s) 40, 562, 768
MalI GATC 8 cut(s) 236, 283, 440, 449, 572, 705, 905, 938
MboI GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
MboII GAAGA 5 cut(s) 289, 481, 525, 769, 881
MfeI CAATTG 1 cut(s) 811
MhlI GDGCHC 2 cut(s) 297, 821
MluCI AATT 2 cut(s) 366, 811
Mly113I GGCGCC 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 2 cut(s) 20, 620
MspR9I CCNGG 3 cut(s) 25, 254, 829
MunI CAATTG 1 cut(s) 811
MvaI CCWGG 3 cut(s) 25, 254, 829
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 2 cut(s) 461, 699
NarI GGCGCC 1 cut(s) 520
NcoI CCATGG 1 cut(s) 859
NdeII GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
NlaIII CATG 4 cut(s) 195, 395, 863, 923
NlaIV GGNNCC 2 cut(s) 521, 833
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 2 cut(s) 562, 768
PaqCI CACCTGC 1 cut(s) 273
PceI AGGCCT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 3 cut(s) 558, 564, 603
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 549, 916
PkrI GCNGC 6 cut(s) 226, 386, 631, 657, 660, 891
Ple19I CGATCG 1 cut(s) 706
PluTI GGCGCC 1 cut(s) 523
PsiI TTATAA 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 23, 252, 827
PspGI CCWGG 3 cut(s) 23, 252, 827
PspN4I GGNNCC 2 cut(s) 521, 833
PspPI GGNCC 4 cut(s) 613, 646, 791, 825
PstI CTGCAG 1 cut(s) 354
PvuI CGATCG 1 cut(s) 706
RseI CAYNNNNRTG 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 6 cut(s) 225, 385, 630, 656, 659, 890
Sau3AI GATC 8 cut(s) 234, 281, 438, 447, 570, 703, 903, 936
Sau96I GGNCC 4 cut(s) 613, 646, 791, 825
ScrFI CCNGG 3 cut(s) 25, 254, 829
SduI GDGCHC 2 cut(s) 297, 821
SexAI ACCWGGT 1 cut(s) 252
SfaNI GCATC 1 cut(s) 708
SfcI CTRYAG 1 cut(s) 350
SfoI GGCGCC 1 cut(s) 521
SinI GGWCC 3 cut(s) 613, 791, 825
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 2 cut(s) 366, 811
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 3 cut(s) 630, 656, 890
SspDI GGCGCC 1 cut(s) 519
SspMI CTAG 1 cut(s) 822
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 3 cut(s) 23, 252, 827
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 3 cut(s) 382, 582, 609
TaqI TCGA 5 cut(s) 237, 280, 446, 597, 902
TasI AATT 2 cut(s) 366, 811
TauI GCSGC 3 cut(s) 632, 658, 892
TfiI GAWTC 2 cut(s) 549, 916
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseFI GTSAC 2 cut(s) 562, 768
TseI GCWGC 3 cut(s) 224, 384, 658
Tsp45I GTSAC 2 cut(s) 562, 768
TspDTI ATGAA 5 cut(s) 289, 408, 481, 787, 838
TspGWI ACGGA 2 cut(s) 581, 783
VpaK11BI GGWCC 3 cut(s) 613, 791, 825
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 1 cut(s) 822
ZraI GACGTC 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.