pycom09g19060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0008033
Physical Location & Seq
Reverse (-)
19843330 .. 19843947
618 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19060.1

Sequence Viewer

Length: 618 bp
ATGGCGTCAACGAGTCAACGATCCCTCCTCCTCATCGCCCTCATCACCCTCTCCCTCTTCGCCATCTCCGCCACCGCATCAAGGCCCTGCAAAACCCTCTTCGTTTCATCCTACTCCTTCTCCCTTCGCCGTCTCCCATCCTCCTCTTCCTCCTCCGGCTTCGTCACCGTCGTCACCGAAATCGGCCAGCTCCGCCCTGTACACATCCACCCTGCCCGCTCAGAAGACGTCTTCGTCCCAGACCACCACCACCACCACCACCACCACGACAGCGAGAAGCGGACTCAGACGGCACCGCTCTTTCCCTTCATCGGAACGGCTTCTTCGTCGTCGTCCTACGACCTCAGCTCCCTGCGCGATCGCACCAAGGACATCCTTAGCGTCGTCGTTTCGCTGCTTTTCGGCGTTGGCTGCGGCGCGCTCACCGCCGCCACTATGTACCTGGCTTGGTCCGTCTTCATCAGTCGCCACGACGACAGCGGCTCCAGCTCTTTCGATGACGATTTCAAAGACTTCAGCCCGAAGAAGGTGGGTTATGTCAAGATTCCGGAGGTGACCGCTGACTCCGTTTCCCCACCACCGTCTACGGTCAAGGAAGCCGCCGCCGCCGCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.09

Weight (kDa)

7.19

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 292
AccBSI CCGCTC 2 cut(s) 219, 298
AccI GTMKAC 1 cut(s) 584
AccII CGCG 2 cut(s) 357, 419
AccIII TCCGGA 1 cut(s) 547
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 499
AcyI GRCGYC 2 cut(s) 5, 228
AfaI GTAC 2 cut(s) 201, 440
AfiI CCNNNNNNNGG 3 cut(s) 81, 311, 526
AgsI TTSAA 1 cut(s) 508
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 3 cut(s) 190, 348, 489
AluI AGCT 3 cut(s) 190, 348, 489
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 15
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 2 cut(s) 83, 184
ApeKI GCWGC 2 cut(s) 394, 411
AsiSI GCGATCGC 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 319
AspLEI GCGC 3 cut(s) 357, 419, 421
AspS9I GGNCC 2 cut(s) 84, 450
AsuHPI GGTGA 5 cut(s) 37, 157, 166, 415, 565
AvaII GGWCC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 292
BbsI GAAGAC 3 cut(s) 223, 231, 448
BbvCI CCTCAGC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 381, 398
BccI CCATC 2 cut(s) 71, 145
BceAI ACGGC 3 cut(s) 114, 306, 333
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 137
BisI GCNGC 9 cut(s) 395, 412, 415, 429, 481, 600, 603, 606, 609
BlsI GCNGC 9 cut(s) 396, 413, 416, 430, 482, 601, 604, 607, 610
Bme1390I CCNGG 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 2 cut(s) 84, 450
BmiI GGNNCC 2 cut(s) 294, 484
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 1 cut(s) 86
BpiI GAAGAC 3 cut(s) 223, 231, 448
BpmI CTGGAG 1 cut(s) 469
Bpu10I CCTNAGC 2 cut(s) 344, 377
BsaHI GRCGYC 2 cut(s) 5, 228
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 8 cut(s) 9, 39, 104, 134, 332, 362, 467, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 311, 526
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 4 cut(s) 107, 137, 204, 372
BseLI CCNNNNNNNGG 3 cut(s) 81, 311, 526
BseMII CTCAG 3 cut(s) 234, 299, 358
BsePI GCGCGC 1 cut(s) 417
BseRI GAGGAG 4 cut(s) 17, 20, 133, 142
BseXI GCAGC 2 cut(s) 381, 398
Bsh1236I CGCG 2 cut(s) 357, 419
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 2 cut(s) 85, 186
BshNI GGYRCC 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 361
BsiSI CCGG 2 cut(s) 156, 548
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 81, 311, 526
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 85, 186
Bsp13I TCCGGA 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 20, 358
BspANI GGCC 2 cut(s) 85, 186
BspCNI CTCAG 3 cut(s) 233, 298, 357
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 2 cut(s) 357, 419
BspLI GGNNCC 2 cut(s) 294, 484
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 292
BsrBI CCGCTC 2 cut(s) 219, 298
BsrGI TGTACA 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 366
BssHII GCGCGC 1 cut(s) 417
BssMI GATC 2 cut(s) 20, 358
BssNI GRCGYC 2 cut(s) 5, 228
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 3 cut(s) 169, 582, 589
Bst6I CTCTTC 3 cut(s) 62, 104, 151
BstACI GRCGYC 2 cut(s) 5, 228
BstAUI TGTACA 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 188, 217, 419
BstDEI CTNAG 4 cut(s) 220, 285, 344, 377
BstEII GGTNACC 1 cut(s) 553
BstF5I GGATG 4 cut(s) 107, 137, 204, 372
BstFNI CGCG 2 cut(s) 357, 419
BstHHI GCGC 3 cut(s) 357, 419, 421
BstKTI GATC 2 cut(s) 23, 361
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 20, 358
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 8 cut(s) 68, 192, 354, 411, 425, 486, 605, 608
BstNI CCWGG 1 cut(s) 443
BstPI GGTNACC 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 441
BstUI CGCG 2 cut(s) 357, 419
BstV1I GCAGC 2 cut(s) 381, 398
BstV2I GAAGAC 3 cut(s) 223, 231, 448
BsuRI GGCC 2 cut(s) 85, 186
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 4 cut(s) 107, 137, 204, 372
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 3 cut(s) 188, 217, 419
CfoI GCGC 3 cut(s) 357, 419, 421
Cfr13I GGNCC 2 cut(s) 84, 450
CseI GACGC 1 cut(s) 370
Csp6I GTAC 2 cut(s) 200, 439
CviQI GTAC 2 cut(s) 200, 439
DdeI CTNAG 4 cut(s) 220, 285, 344, 377
DpnI GATC 2 cut(s) 22, 360
DpnII GATC 2 cut(s) 20, 358
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 3 cut(s) 62, 104, 151
EarI CTCTTC 3 cut(s) 62, 104, 151
EciI GGCGGA 2 cut(s) 58, 182
Eco130I CCWWGG 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 499
Eco91I GGTNACC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 84
EcoO65I GGTNACC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 137
FaiI YATR 2 cut(s) 437, 537
FaqI GGGAC 1 cut(s) 221
FauI CCCGC 1 cut(s) 224
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 9 cut(s) 395, 412, 415, 429, 481, 600, 603, 606, 609
FokI GGATG 4 cut(s) 94, 124, 191, 359
Fsp4HI GCNGC 9 cut(s) 395, 412, 415, 429, 481, 600, 603, 606, 609
GlaI GCGC 3 cut(s) 356, 418, 420
GluI GCNGC 9 cut(s) 395, 412, 415, 429, 481, 600, 603, 606, 609
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 2 cut(s) 85, 186
HapII CCGG 2 cut(s) 156, 548
HgaI GACGC 1 cut(s) 370
HhaI GCGC 3 cut(s) 357, 419, 421
Hin1I GRCGYC 2 cut(s) 5, 228
Hin6I GCGC 3 cut(s) 355, 417, 419
HinP1I GCGC 3 cut(s) 355, 417, 419
HincII GTYRAC 2 cut(s) 9, 17
HindII GTYRAC 2 cut(s) 9, 17
HinfI GANTC 4 cut(s) 13, 283, 544, 563
HpaII CCGG 2 cut(s) 156, 548
HphI GGTGA 5 cut(s) 37, 157, 166, 415, 565
Hpy166II GTNNAC 4 cut(s) 9, 17, 202, 585
Hpy188I TCNGA 3 cut(s) 223, 288, 314
Hpy188III TCNNGA 2 cut(s) 541, 548
Hpy8I GTNNAC 4 cut(s) 9, 17, 202, 585
Hpy99I CGWCG 6 cut(s) 173, 331, 334, 386, 389, 476
HpyAV CCTTC 4 cut(s) 127, 134, 316, 520
HpyCH4III ACNGT 3 cut(s) 169, 582, 589
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 192, 354, 411, 425, 486, 605, 608
HpyF3I CTNAG 4 cut(s) 220, 285, 344, 377
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 2 cut(s) 5, 228
HspAI GCGC 3 cut(s) 355, 417, 419
Kpn2I TCCGGA 1 cut(s) 547
Kzo9I GATC 2 cut(s) 20, 358
LmnI GCTCC 3 cut(s) 195, 353, 488
Lsp1109I GCAGC 2 cut(s) 381, 398
LweI GCATC 1 cut(s) 86
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 163, 172, 553
MalI GATC 2 cut(s) 22, 360
MbiI CCGCTC 2 cut(s) 219, 298
MboI GATC 2 cut(s) 20, 358
MboII GAAGA 8 cut(s) 49, 91, 138, 223, 236, 315, 448, 535
MlyI GAGTC 3 cut(s) 22, 277, 557
MroI TCCGGA 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 319
MspA1I CMGCKG 2 cut(s) 480, 560
MspI CCGG 2 cut(s) 156, 548
MspR9I CCNGG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 2 cut(s) 357, 419
MwoI GCNNNNNNNGC 8 cut(s) 68, 192, 354, 411, 425, 486, 605, 608
NdeII GATC 2 cut(s) 20, 358
NlaIV GGNNCC 2 cut(s) 294, 484
NmuCI GTSAC 3 cut(s) 163, 172, 553
PauI GCGCGC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 323
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 9 cut(s) 396, 413, 416, 430, 482, 601, 604, 607, 610
Ple19I CGATCG 1 cut(s) 361
PleI GAGTC 3 cut(s) 21, 277, 557
PpsI GAGTC 3 cut(s) 21, 277, 557
Psp6I CCWGG 1 cut(s) 441
PspEI GGTNACC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 294, 484
PspPI GGNCC 2 cut(s) 84, 450
PteI GCGCGC 1 cut(s) 417
PvuI CGATCG 1 cut(s) 361
RgaI GCGATCGC 1 cut(s) 361
RsaI GTAC 2 cut(s) 201, 440
RsaNI GTAC 2 cut(s) 200, 439
SatI GCNGC 9 cut(s) 395, 412, 415, 429, 481, 600, 603, 606, 609
Sau3AI GATC 2 cut(s) 20, 358
Sau96I GGNCC 2 cut(s) 84, 450
SchI GAGTC 3 cut(s) 22, 277, 557
ScrFI CCNGG 1 cut(s) 443
SetI ASST 8 cut(s) 192, 231, 345, 350, 444, 491, 531, 555
SfaAI GCGATCGC 1 cut(s) 361
SfaNI GCATC 1 cut(s) 86
SgfI GCGATCGC 1 cut(s) 361
SinI GGWCC 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 169, 582, 589
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 495
TatI WGTACW 1 cut(s) 199
TauI GCSGC 7 cut(s) 417, 431, 483, 602, 605, 608, 611
TfiI GAWTC 1 cut(s) 544
TscAI CASTG 1 cut(s) 618
TseFI GTSAC 3 cut(s) 163, 172, 553
TseI GCWGC 2 cut(s) 394, 411
Tsp45I GTSAC 3 cut(s) 163, 172, 553
TspDTI ATGAA 3 cut(s) 96, 298, 448
TspGWI ACGGA 2 cut(s) 442, 556
TspRI CASTG 1 cut(s) 618
VpaK11BI GGWCC 1 cut(s) 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 319
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.