Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008033

Physical Location & Seq

Genomic Coordinates Reverse (-)

35695227 .. 35695802

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1273600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGTCAACGAGTCAACGAACCCTCATTCTCCTCATCGCTCTCCTCACCCTTTCCCTCTTCGCCATCTCCGCCACCGCATCAAGGCCCTGCAAAACGTTCTTCGTTTCCTCCTACTCTTTCTCCCTCCGCCATCTCCCCTCCTCCTCTTCCCCCTCCGGCTTCGTCACCGTCGTCACCGAAATCGGACAGCTCCGCCCTGTCCACATCCACCCTGCCCGCTCAGAAGACGTCTTTGTCCCACACCACCACCACCACCACCACCACCACGACAGCAAGAAGCGATCTCAGACGGCACCGCTCTTTCCTTTCATTGGAACGGCTTCTTTGTTGTCATCCTACGACATCAACTCCCTGTGCGATCGCACCAAGGACATCCTGAGCGTCGTTGTTTCGTTGCTTTTCGGCGTTGGCTGCGACGCGCTCACCGCCGCCAATATGTACCTGGCTTGGTCCGTCTTCATCAGTCGCCACGACGACAGCGGCTCCAACTCTTTCAAGTATTTTTGGGTTTCATGTCGCGATATTATCGATAATATCACGATATATTGCCCAAATAATGTATTAAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.22

Weight (kDa)

8.58

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65720
malus_domestica	MD03G1273600.v1.1 MD09G1282600.v1.1 MD17G1272400.v1.1
prunus_persica	Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1
pyrus_communis	pycom09g19060 pycom17g27130
rosa_laevigata	RLG00000014595 RLG00000022985 RLG00000035004
rosa_multiflora	Rmu_sc0008132.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261030 Rroxscaffold_6G00394590
rosa_rugosa	Rorug01G0253400 Rorug03G0235800 Rorug06G0082900
rosa_samantha	Rh3AG284000 Rh3BG320400 Rh3CG318700 Rh3DG317600
rosa_wichuraiana	Rw3G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	2 cut(s)	222, 301
AccII	CGCG	2 cut(s)	422, 522
AciI	CCGC	9 cut(s)	72, 78, 130, 196, 220, 299, 429, 432, 483
AclI	AACGTT	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	5, 231
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	84, 314
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	414
AsiSI	GCGATCGC	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	87, 453
AsuHPI	GGTGA	4 cut(s)	40, 160, 169, 418
AvaII	GGWCC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	234, 451
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	2 cut(s)	74, 141
BceAI	ACGGC	2 cut(s)	309, 336
BciT130I	CCWGG	1 cut(s)	446
BisI	GCNGC	3 cut(s)	415, 432, 484
BlsI	GCNGC	3 cut(s)	416, 433, 485
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	87, 453
BmiI	GGNNCC	2 cut(s)	297, 487
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	2 cut(s)	234, 451
Bpu10I	CCTNAGC	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	531
BsaHI	GRCGYC	2 cut(s)	5, 231
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 335, 365, 470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 314
BseBI	CCWGG	1 cut(s)	446
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	207, 335, 375
BseLI	CCNNNNNNNGG	2 cut(s)	84, 314
BseMII	CTCAG	3 cut(s)	237, 302, 371
BseRI	GAGGAG	4 cut(s)	23, 35, 133, 136
BseXI	GCAGC	1 cut(s)	401
Bsh1236I	CGCG	2 cut(s)	422, 522
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	295
BshVI	ATCGAT	1 cut(s)	531
BsiEI	CGRYCG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	84, 314
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	284, 361
Bsp68I	TCGCGA	1 cut(s)	522
BspACI	CCGC	9 cut(s)	72, 78, 130, 196, 220, 299, 429, 432, 483
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	3 cut(s)	236, 301, 372
BspDI	ATCGAT	1 cut(s)	531
BspFNI	CGCG	2 cut(s)	422, 522
BspLI	GGNNCC	2 cut(s)	297, 487
BspT107I	GGYRCC	1 cut(s)	295
BsrBI	CCGCTC	2 cut(s)	222, 301
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	284, 361
BssNI	GRCGYC	2 cut(s)	5, 231
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	65, 154
BstACI	GRCGYC	2 cut(s)	5, 231
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	223, 288, 380
BstF5I	GGATG	3 cut(s)	207, 335, 375
BstFNI	CGCG	2 cut(s)	422, 522
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	287, 364
BstMBI	GATC	2 cut(s)	284, 361
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 414, 428
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstUI	CGCG	2 cut(s)	422, 522
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	2 cut(s)	234, 451
Bsu15I	ATCGAT	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	207, 335, 375
BtuMI	TCGCGA	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	87, 453
ClaI	ATCGAT	1 cut(s)	531
CseI	GACGC	2 cut(s)	373, 428
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	1 cut(s)	516
CviJI	RGCY	7 cut(s)	88, 162, 193, 323, 414, 449, 486
CviKI_1	RGCY	7 cut(s)	88, 162, 193, 323, 414, 449, 486
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	223, 288, 380
DpnI	GATC	2 cut(s)	286, 363
DpnII	GATC	2 cut(s)	284, 361
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	65, 154
EarI	CTCTTC	2 cut(s)	65, 154
EciI	GGCGGA	3 cut(s)	61, 119, 185
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	519
FaiI	YATR	3 cut(s)	440, 517, 547
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	515
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	415, 432, 484
FokI	GGATG	3 cut(s)	194, 322, 362
Fsp4HI	GCNGC	3 cut(s)	415, 432, 484
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	3 cut(s)	415, 432, 484
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	373, 428
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	2 cut(s)	5, 231
Hin1II	CATG	1 cut(s)	519
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	2 cut(s)	9, 17
HindII	GTYRAC	2 cut(s)	9, 17
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	4 cut(s)	40, 160, 169, 418
Hpy166II	GTNNAC	3 cut(s)	9, 17, 205
Hpy188I	TCNGA	3 cut(s)	188, 226, 291
Hpy188III	TCNNGA	3 cut(s)	379, 521, 541
Hpy8I	GTNNAC	3 cut(s)	9, 17, 205
Hpy99I	CGWCG	4 cut(s)	176, 389, 422, 479
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	98, 231
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 414, 428
HpyF3I	CTNAG	3 cut(s)	223, 288, 380
HpySE526I	ACGT	2 cut(s)	98, 231
Hsp92I	GRCGYC	2 cut(s)	5, 231
Hsp92II	CATG	1 cut(s)	519
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	2 cut(s)	284, 361
LmnI	GCTCC	2 cut(s)	198, 491
LpnPI	CCDG	8 cut(s)	103, 172, 213, 228, 368, 392, 431, 458
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	1 cut(s)	89
MaeII	ACGT	2 cut(s)	98, 231
MaeIII	GTNAC	2 cut(s)	166, 175
MalI	GATC	2 cut(s)	286, 363
MbiI	CCGCTC	2 cut(s)	222, 301
MboI	GATC	2 cut(s)	284, 361
MboII	GAAGA	5 cut(s)	52, 94, 141, 239, 451
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	483
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	2 cut(s)	422, 522
MwoI	GCNNNNNNNGC	3 cut(s)	71, 414, 428
NdeII	GATC	2 cut(s)	284, 361
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	2 cut(s)	297, 487
NmuCI	GTSAC	2 cut(s)	166, 175
NruI	TCGCGA	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	416, 433, 485
Ple19I	CGATCG	1 cut(s)	364
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	297, 487
PspPI	GGNCC	2 cut(s)	87, 453
PvuI	CGATCG	1 cut(s)	364
RgaI	GCGATCGC	1 cut(s)	364
RruI	TCGCGA	1 cut(s)	522
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	415, 432, 484
Sau3AI	GATC	2 cut(s)	284, 361
Sau96I	GGNCC	2 cut(s)	87, 453
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	446
SetI	ASST	4 cut(s)	101, 195, 234, 447
SfaAI	GCGATCGC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	89
SgfI	GCGATCGC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	453
SsiI	CCGC	9 cut(s)	72, 78, 130, 196, 220, 299, 429, 432, 483
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	2 cut(s)	101, 234
TaqI	TCGA	1 cut(s)	531
TauI	GCSGC	2 cut(s)	434, 486
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TseFI	GTSAC	2 cut(s)	166, 175
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	2 cut(s)	166, 175
TspDTI	ATGAA	3 cut(s)	301, 451, 504
TspGWI	ACGGA	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	322
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.