Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008033

Physical Location & Seq

Genomic Coordinates Reverse (-)

55165077 .. 55166754

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAAGTGGACTTGAAGTTGGTTTATGGCCTTAGAGAAGAAGGTAATGGAGACTGCAAGTCATATTTGTTAGAATCAACAACCAATAGCGATAAAGAAGTCTTGTTGATCCATCAAACACTTCAGGTCTACACAAATCCAATTCCTTCTGAGTTTCTAAAACGGCTGCCACCATGCATTCCAATAATTTGGACTAGACAACACGATCTTAGCTTCCATGGAAACTTGCCTTTGGTTATAAGACCCCTCCTGATAGCTCTGTTGATCCTCTCAATCTTGGCAATCTCGGCCACCGTGAGGCTTTGCAAGACCCTCTTCATCTCCTACTACTTCGTCTCCCTCAGGCGCCTCCCCTCCTCTTCCTCCTCCTCGGGATTCGTCACCGAGATCAGAGACGTCAAGCCCATCCGTTTCGACGACGGCGTTTTGGTCCAGCCGAACGACGCTGCCTCCACCGATGAGGCCTGCCAGCTGCATCAGCCTCCCCTCCCTCTCTCCACCTACCTCAGCGCTCTGCGCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.54

Weight (kDa)

6.07

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65720
malus_domestica	MD03G1273600.v1.1 MD09G1282600.v1.1 MD17G1272400.v1.1
prunus_persica	Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1
pyrus_communis	pycom09g19060 pycom17g27130
rosa_laevigata	RLG00000014595 RLG00000022985 RLG00000035004
rosa_multiflora	Rmu_sc0008132.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261030 Rroxscaffold_6G00394590
rosa_rugosa	Rorug01G0253400 Rorug03G0235800 Rorug06G0082900
rosa_samantha	Rh3AG284000 Rh3BG320400 Rh3CG318700 Rh3DG317600
rosa_wichuraiana	Rw3G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AatII	GACGTC	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	519
AclWI	GGATC	2 cut(s)	103, 259
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	346, 396
AfeI	AGCGCT	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	16
AhdI	GACNNNNNGTC	1 cut(s)	58
AluBI	AGCT	3 cut(s)	213, 257, 472
AluI	AGCT	3 cut(s)	213, 257, 472
Alw26I	GTCTC	3 cut(s)	45, 340, 387
AlwI	GGATC	2 cut(s)	103, 259
Ama87I	CYCGRG	1 cut(s)	370
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	3 cut(s)	28, 288, 462
ApeKI	GCWGC	3 cut(s)	166, 446, 472
AspLEI	GCGC	3 cut(s)	348, 512, 519
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	506
BbvI	GCAGC	3 cut(s)	153, 433, 459
BccI	CCATC	2 cut(s)	120, 413
BceAI	ACGGC	2 cut(s)	179, 436
BcoDI	GTCTC	3 cut(s)	45, 340, 387
BfaI	CTAG	2 cut(s)	195, 523
BfoI	RGCGCY	2 cut(s)	349, 513
BisI	GCNGC	3 cut(s)	167, 447, 473
BlsI	GCNGC	3 cut(s)	168, 448, 474
Bme18I	GGWCC	1 cut(s)	430
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	347
BmsI	GCATC	1 cut(s)	484
Bpu10I	CCTNAGC	1 cut(s)	506
BsaHI	GRCGYC	2 cut(s)	346, 396
BsaJI	CCNNGG	2 cut(s)	217, 369
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	217, 369
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	141, 355, 520
BseRI	GAGGAG	3 cut(s)	346, 355, 358
BseXI	GCAGC	3 cut(s)	153, 433, 459
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	30, 290, 464
BshNI	GGYRCC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	3 cut(s)	45, 340, 387
BsmBI	CGTCTC	2 cut(s)	340, 387
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	30, 290, 464
BsoBI	CYCGRG	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	108, 205, 264, 387
Bsp19I	CCATGG	1 cut(s)	217
BspANI	GGCC	3 cut(s)	30, 290, 464
BspCNI	CTCAG	3 cut(s)	142, 354, 519
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	103, 259
BspT107I	GGYRCC	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	217, 369
BssMI	GATC	4 cut(s)	108, 205, 264, 387
BssNI	GRCGYC	2 cut(s)	346, 396
BssT1I	CCWWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	2 cut(s)	320, 364
BstACI	GRCGYC	2 cut(s)	346, 396
BstC8I	GCNNGC	2 cut(s)	466, 470
BstDEI	CTNAG	5 cut(s)	32, 150, 209, 341, 506
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	2 cut(s)	349, 513
BstHHI	GCGC	3 cut(s)	348, 512, 519
BstKTI	GATC	4 cut(s)	111, 208, 267, 390
BstMAI	GTCTC	3 cut(s)	45, 340, 387
BstMBI	GATC	4 cut(s)	108, 205, 264, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 478, 516
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	153, 433, 459
BstXI	CCANNNNNNTGG	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	30, 290, 464
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	466, 470
CfoI	GCGC	3 cut(s)	348, 512, 519
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	1 cut(s)	452
CviAII	CATG	2 cut(s)	174, 218
DdeI	CTNAG	5 cut(s)	32, 150, 209, 341, 506
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	4 cut(s)	110, 207, 266, 389
DpnII	GATC	4 cut(s)	108, 205, 264, 387
DriI	GACNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	320, 364
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EarI	CTCTTC	2 cut(s)	320, 364
Eco130I	CCWWGG	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	430
Eco47III	AGCGCT	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	2 cut(s)	340, 387
FaeI	CATG	2 cut(s)	177, 221
FaiI	YATR	5 cut(s)	27, 64, 175, 219, 239
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	2 cut(s)	173, 217
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	167, 447, 473
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	167, 447, 473
FspBI	CTAG	2 cut(s)	195, 523
GlaI	GCGC	3 cut(s)	347, 511, 518
GluI	GCNGC	3 cut(s)	167, 447, 473
HaeII	RGCGCY	2 cut(s)	349, 513
HaeIII	GGCC	3 cut(s)	30, 290, 464
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	3 cut(s)	348, 512, 519
Hin1I	GRCGYC	2 cut(s)	346, 396
Hin1II	CATG	2 cut(s)	177, 221
Hin6I	GCGC	3 cut(s)	346, 510, 517
HinP1I	GCGC	3 cut(s)	346, 510, 517
HinfI	GANTC	2 cut(s)	74, 375
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	10, 130
Hpy188I	TCNGA	2 cut(s)	151, 392
Hpy188III	TCNNGA	2 cut(s)	250, 372
Hpy8I	GTNNAC	2 cut(s)	10, 130
Hpy99I	CGWCG	3 cut(s)	419, 422, 446
HpyAV	CCTTC	2 cut(s)	35, 156
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	57, 177, 306, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 478, 516
HpyF3I	CTNAG	5 cut(s)	32, 150, 209, 341, 506
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	2 cut(s)	346, 396
Hsp92II	CATG	2 cut(s)	177, 221
HspAI	GCGC	3 cut(s)	346, 510, 517
KasI	GGCGCC	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	108, 205, 264, 387
LpnPI	CCDG	6 cut(s)	110, 263, 328, 446, 478, 482
Lsp1109I	GCAGC	3 cut(s)	153, 433, 459
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	195, 523
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	4 cut(s)	110, 207, 266, 389
MboI	GATC	4 cut(s)	108, 205, 264, 387
MboII	GAAGA	3 cut(s)	50, 307, 351
MluCI	AATT	2 cut(s)	141, 186
Mly113I	GGCGCC	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	287, 478, 516
NarI	GGCGCC	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	108, 205, 264, 387
NlaIII	CATG	2 cut(s)	177, 221
NlaIV	GGNNCC	1 cut(s)	347
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	74, 375
PkrI	GCNGC	3 cut(s)	168, 448, 474
PluTI	GGCGCC	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	472
SatI	GCNGC	3 cut(s)	167, 447, 473
Sau3AI	GATC	4 cut(s)	108, 205, 264, 387
Sau96I	GGNCC	1 cut(s)	430
SetI	ASST	8 cut(s)	46, 129, 215, 259, 399, 474, 503, 507
SfaNI	GCATC	1 cut(s)	484
SfoI	GGCGCC	1 cut(s)	347
SinI	GGWCC	1 cut(s)	430
Sse9I	AATT	2 cut(s)	141, 186
SseBI	AGGCCT	1 cut(s)	464
SspDI	GGCGCC	1 cut(s)	345
SspMI	CTAG	2 cut(s)	195, 523
StuI	AGGCCT	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	141, 186
TfiI	GAWTC	2 cut(s)	74, 375
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	166, 446, 472
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	195, 523
ZraI	GACGTC	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.