Rorug03G0235800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008033
Physical Location & Seq
Reverse (-)
21850759 .. 21851223
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0235800.1

Sequence Viewer

Length: 465 bp
ATGGCACCGAGCAGTGAAGCAAACTCAGTCAACAGCACGGCAACCTCAGGCCCTGGAGAGGTTTATAAGTGCCGCCACTGCGAAAAAACCTTCCGCAATGGTCAGGCTCTGGGCGGCCACCAGAATGCCCACCGCGGCGTTCATAGGGGGGTCATGAGGAGAATAGCTAATGCTATGGGCTCCCTCAGGAGCCCACAGCAGCTGGCTGCTGGTCCCTCATCGTTCGAATCCGGTGAGGTCAATCAGGTAGTCCACCTTAGAAGGACGACAGAACCGGAGAAGCCTCCAGAGGGTAAAACAAGAATCTTTCTTGAAGAATGGAGGGACAAAGCAGCTGCAGACTCGGATTCAGAAAGAACAGTCTCTCAGTCAATTGTTCCCAAGAGACCTTGTTATAAGAGAAAAGGGGAAGAAGTGATGAGTACTCCCCATAATATAGATTTGGACCTCAAATTAGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.93

Weight (kDa)

9.33

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 21 - 46 5.8e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 66, 396
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 135
AciI CCGC 5 cut(s) 73, 94, 114, 133, 135
AcoI YGGCCR 1 cut(s) 115
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 2 cut(s) 58, 290
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 3 cut(s) 167, 202, 335
AluI AGCT 3 cut(s) 167, 202, 335
Alw26I GTCTC 2 cut(s) 367, 379
AlwNI CAGNNNCTG 3 cut(s) 53, 109, 202
AoxI GGCC 2 cut(s) 49, 115
ApeKI GCWGC 4 cut(s) 199, 206, 332, 335
AspS9I GGNCC 3 cut(s) 50, 212, 445
AsuHPI GGTGA 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 2 cut(s) 212, 445
AxyI CCTNAGG 2 cut(s) 46, 185
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 182, 194
BbvI GCAGC 4 cut(s) 193, 211, 322, 344
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 367, 379
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 7 cut(s) 73, 115, 136, 200, 207, 333, 336
BlsI GCNGC 7 cut(s) 74, 116, 137, 201, 208, 334, 337
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 2 cut(s) 212, 445
BmgT120I GGNCC 3 cut(s) 50, 212, 445
BmiI GGNNCC 4 cut(s) 6, 181, 191, 214
BmrFI CCNGG 1 cut(s) 54
BpmI CTGGAG 2 cut(s) 75, 270
Bpu14I TTCGAA 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 52, 133
BsaWI WCCGGW 2 cut(s) 230, 274
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 290
Bse21I CCTNAGG 2 cut(s) 46, 185
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 52, 133
BseLI CCNNNNNNNGG 2 cut(s) 58, 290
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 4 cut(s) 39, 60, 199, 380
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 4 cut(s) 193, 211, 322, 344
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 51, 117
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 231, 275
BslFI GGGAC 2 cut(s) 198, 338
BslI CCNNNNNNNGG 2 cut(s) 58, 290
BsmAI GTCTC 2 cut(s) 367, 379
BsmFI GGGAC 2 cut(s) 198, 338
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 2 cut(s) 51, 117
Bso31I GGTCTC 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 182, 194
BspACI CCGC 5 cut(s) 73, 94, 114, 133, 135
BspANI GGCC 2 cut(s) 51, 117
BspCNI CTCAG 4 cut(s) 38, 59, 198, 379
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 6, 181, 191, 214
BspMAI CTGCAG 1 cut(s) 340
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 52, 133
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 361
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 5 cut(s) 25, 46, 185, 257, 366
BstDSI CCRYGG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 135
BstMAI GTCTC 2 cut(s) 367, 379
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 4 cut(s) 193, 211, 322, 344
Bsu36I CCTNAGG 2 cut(s) 46, 185
BsuRI GGCC 2 cut(s) 51, 117
BtgI CCRYGG 1 cut(s) 133
BtsI GCAGTG 2 cut(s) 19, 76
BtsIMutI CAGTG 2 cut(s) 19, 76
Cac8I GCNNGC 1 cut(s) 204
CaiI CAGNNNCTG 3 cut(s) 53, 109, 202
CciI TCATGA 1 cut(s) 153
Cfr13I GGNCC 3 cut(s) 50, 212, 445
Cfr42I CCGCGG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 154
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 5 cut(s) 25, 46, 185, 257, 366
EaeI YGGCCR 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 182, 194
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 212, 445
Eco81I CCTNAGG 2 cut(s) 46, 185
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 52
EcoT38I GRGCYC 2 cut(s) 182, 194
FaeI CATG 1 cut(s) 157
FaiI YATR 7 cut(s) 66, 144, 155, 176, 396, 432, 437
FaqI GGGAC 2 cut(s) 198, 338
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 7 cut(s) 73, 115, 136, 200, 207, 333, 336
FriOI GRGCYC 2 cut(s) 182, 194
Fsp4HI GCNGC 7 cut(s) 73, 115, 136, 200, 207, 333, 336
GluI GCNGC 7 cut(s) 73, 115, 136, 200, 207, 333, 336
GsuI CTGGAG 2 cut(s) 75, 270
HaeIII GGCC 2 cut(s) 51, 117
HapII CCGG 2 cut(s) 231, 275
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 4 cut(s) 227, 303, 341, 347
HpaII CCGG 2 cut(s) 231, 275
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 31, 253
Hpy188I TCNGA 2 cut(s) 346, 352
Hpy188III TCNNGA 4 cut(s) 154, 187, 287, 311
Hpy8I GTNNAC 2 cut(s) 31, 253
HpyAV CCTTC 2 cut(s) 100, 255
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 5 cut(s) 25, 46, 185, 257, 366
Hsp92II CATG 1 cut(s) 157
KspI CCGCGG 1 cut(s) 136
LmnI GCTCC 2 cut(s) 185, 189
Lsp1109I GCAGC 4 cut(s) 193, 211, 322, 344
MboII GAAGA 2 cut(s) 326, 422
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 182, 194
MluCI AATT 2 cut(s) 372, 452
MlyI GAGTC 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 3 cut(s) 135, 202, 335
MspI CCGG 2 cut(s) 231, 275
MspR9I CCNGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 78
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 4 cut(s) 6, 181, 191, 214
NspV TTCGAA 1 cut(s) 225
PagI TCATGA 1 cut(s) 153
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 227, 303, 347
PkrI GCNGC 7 cut(s) 74, 116, 137, 201, 208, 334, 337
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PsiI TTATAA 2 cut(s) 66, 396
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 4 cut(s) 6, 181, 191, 214
PspPI GGNCC 3 cut(s) 50, 212, 445
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 3 cut(s) 53, 109, 202
PvuII CAGCTG 2 cut(s) 202, 335
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 123
SacII CCGCGG 1 cut(s) 136
SatI GCNGC 7 cut(s) 73, 115, 136, 200, 207, 333, 336
Sau96I GGNCC 3 cut(s) 50, 212, 445
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 2 cut(s) 182, 194
SfcI CTRYAG 1 cut(s) 336
Sfr303I CCGCGG 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 225
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 2 cut(s) 212, 445
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 2 cut(s) 372, 452
SsiI CCGC 5 cut(s) 73, 94, 114, 133, 135
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 372, 452
TatI WGTACW 1 cut(s) 422
TauI GCSGC 3 cut(s) 75, 117, 138
TfiI GAWTC 3 cut(s) 227, 303, 347
TscAI CASTG 2 cut(s) 19, 83
TseI GCWGC 4 cut(s) 199, 206, 332, 335
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 2 cut(s) 19, 83
VpaK11BI GGWCC 2 cut(s) 212, 445
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.