Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008033

Physical Location & Seq

Genomic Coordinates Reverse (-)

33436118 .. 33436717

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1272400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGTCAACGAGTCAACGATCCCTCCTCCTCCTCATCGCCCTCCTCTCCCTCTTCGCAATCTCCGCCACCGCATCAAGGCCCTGTAAAACCCTCTTCGTTTCCTCCTACTCCTTCTCCCTCCGCCGCCTCCCCTCCTCCTCTTCCTCCTCCGGCTTCGTCACCATCGTCACCGAGATCAGCCAGATCCGCCCCGTCCACCTCCACCCCGCCCGCTTCGACGACGGCTTCGTCCCACACCCTCACCACGACGCCGCCAGCGAGAAGCGAACTCAGACGGCGCCGCTCTTTCCCGTTATAGGAACGGACTCGGGGTCTTCCTCCTACGACCTCAGCTCCCTCCGCGATCGCACCAAGGACATCCTGAGCGTCGTCGTTTCGCTACTCTTTGGCGTCGGCTGCGGCGCTCTCACCGCCGCCATCCTGTTCCTGGCTTGGTCCGTTTTCATCAGTCGCCACGACGGCGGCTCCAGCTCTTCCGATGACGATTTTGAAGACTTTAGCCCTAAGAAGATGGGTTATGTCAAGATTCCGGAGGTGACCGCTGACTCCGTTTCCCCACCACCGTCTACAGTCAAGGAAGCTGCCGCCGCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

21.18

Weight (kDa)

6.58

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65720
malus_domestica	MD03G1273600.v1.1 MD09G1282600.v1.1 MD17G1272400.v1.1
prunus_persica	Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1 Prupe.3G011600_v2.0.a1
pyrus_communis	pycom09g19060 pycom17g27130
rosa_laevigata	RLG00000014595 RLG00000022985 RLG00000035004
rosa_multiflora	Rmu_sc0008132.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261030 Rroxscaffold_6G00394590
rosa_rugosa	Rorug01G0253400 Rorug03G0235800 Rorug06G0082900
rosa_samantha	Rh3AG284000 Rh3BG320400 Rh3CG318700 Rh3DG317600
rosa_wichuraiana	Rw3G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	569
AccII	CGCG	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	532
AclWI	GGATC	2 cut(s)	15, 181
AcyI	GRCGYC	4 cut(s)	5, 252, 281, 393
AfiI	CCNNNNNNNGG	3 cut(s)	78, 299, 430
AgsI	TTSAA	1 cut(s)	494
AhdI	GACNNNNNGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	336, 474, 584
AluI	AGCT	3 cut(s)	336, 474, 584
AlwI	GGATC	2 cut(s)	15, 181
Ama87I	CYCGRG	1 cut(s)	310
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	399, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AsiSI	GCGATCGC	1 cut(s)	349
AspLEI	GCGC	2 cut(s)	283, 407
AspS9I	GGNCC	2 cut(s)	81, 438
AsuHPI	GGTGA	5 cut(s)	154, 163, 236, 403, 550
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	2 cut(s)	309, 501
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	386, 571
BccI	CCATC	3 cut(s)	173, 428, 508
BceAI	ACGGC	4 cut(s)	241, 294, 478, 578
BciT130I	CCWGG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	2 cut(s)	284, 408
BglI	GCCNNNNNGGC	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	438
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	81, 438
BmiI	GGNNCC	2 cut(s)	282, 469
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	83
BpiI	GAAGAC	2 cut(s)	309, 501
BpmI	CTGGAG	1 cut(s)	454
Bpu10I	CCTNAGC	2 cut(s)	332, 365
BsaHI	GRCGYC	4 cut(s)	5, 252, 281, 393
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 101, 131, 320, 350, 452, 482
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 299, 430
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	360, 420
BseLI	CCNNNNNNNGG	3 cut(s)	78, 299, 430
BseMII	CTCAG	3 cut(s)	287, 346, 356
BseRI	GAGGAG	7 cut(s)	17, 20, 23, 35, 127, 130, 139
BseXI	GCAGC	2 cut(s)	386, 571
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	153, 533
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	78, 299, 430
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	310
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	20, 177, 186, 346
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	286, 345, 357
BspEI	TCCGGA	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	282, 469
BspPI	GGATC	2 cut(s)	15, 181
BspQI	GCTCTTC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	4 cut(s)	20, 177, 186, 346
BssNI	GRCGYC	4 cut(s)	5, 252, 281, 393
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	567, 574
Bst6I	CTCTTC	4 cut(s)	59, 101, 148, 481
BstACI	GRCGYC	4 cut(s)	5, 252, 281, 393
BstC8I	GCNNGC	2 cut(s)	214, 259
BstDEI	CTNAG	4 cut(s)	273, 332, 365, 507
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	360, 420
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	2 cut(s)	284, 408
BstHHI	GCGC	2 cut(s)	283, 407
BstKTI	GATC	4 cut(s)	23, 180, 189, 349
BstMBI	GATC	4 cut(s)	20, 177, 186, 346
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 189, 342, 399, 413, 462, 471, 590
BstNI	CCWGG	1 cut(s)	431
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	386, 571
BstV2I	GAAGAC	2 cut(s)	309, 501
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	360, 420
Cac8I	GCNNGC	2 cut(s)	214, 259
CfoI	GCGC	2 cut(s)	283, 407
Cfr13I	GGNCC	2 cut(s)	81, 438
CseI	GACGC	3 cut(s)	260, 358, 382
DdeI	CTNAG	4 cut(s)	273, 332, 365, 507
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	4 cut(s)	22, 179, 188, 348
DpnII	GATC	4 cut(s)	20, 177, 186, 346
DrdI	GACNNNNNNGTC	1 cut(s)	230
DriI	GACNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	4 cut(s)	59, 101, 148, 481
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	4 cut(s)	59, 101, 148, 481
EciI	GGCGGA	3 cut(s)	55, 113, 179
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	81
EcoO65I	GGTNACC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	354
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	354
FaiI	YATR	2 cut(s)	299, 522
FaqI	GGGAC	1 cut(s)	218
FauI	CCCGC	2 cut(s)	217, 221
FblI	GTMKAC	1 cut(s)	569
FokI	GGATG	2 cut(s)	347, 407
GlaI	GCGC	2 cut(s)	282, 406
GsuI	CTGGAG	1 cut(s)	454
HaeII	RGCGCY	2 cut(s)	284, 408
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	153, 533
HgaI	GACGC	3 cut(s)	260, 358, 382
HhaI	GCGC	2 cut(s)	283, 407
Hin1I	GRCGYC	4 cut(s)	5, 252, 281, 393
Hin6I	GCGC	2 cut(s)	281, 405
HinP1I	GCGC	2 cut(s)	281, 405
HincII	GTYRAC	2 cut(s)	9, 17
HindII	GTYRAC	2 cut(s)	9, 17
HinfI	GANTC	4 cut(s)	13, 308, 529, 548
HpaII	CCGG	2 cut(s)	153, 533
HphI	GGTGA	5 cut(s)	154, 163, 236, 403, 550
Hpy166II	GTNNAC	4 cut(s)	9, 17, 199, 570
Hpy188I	TCNGA	2 cut(s)	276, 481
Hpy188III	TCNNGA	3 cut(s)	364, 526, 533
Hpy8I	GTNNAC	4 cut(s)	9, 17, 199, 570
Hpy99I	CGWCG	7 cut(s)	224, 227, 254, 374, 377, 398, 464
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	567, 574
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 189, 342, 399, 413, 462, 471, 590
HpyF3I	CTNAG	4 cut(s)	273, 332, 365, 507
Hsp92I	GRCGYC	4 cut(s)	5, 252, 281, 393
HspAI	GCGC	2 cut(s)	281, 405
KasI	GGCGCC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	20, 177, 186, 346
LguI	GCTCTTC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	341, 473
Lsp1109I	GCAGC	2 cut(s)	386, 571
LweI	GCATC	1 cut(s)	83
MaeIII	GTNAC	3 cut(s)	160, 169, 538
MalI	GATC	4 cut(s)	22, 179, 188, 348
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	4 cut(s)	20, 177, 186, 346
MboII	GAAGA	7 cut(s)	46, 88, 135, 309, 468, 506, 523
MflI	RGATCY	1 cut(s)	186
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	22, 302, 542
MroI	TCCGGA	1 cut(s)	532
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	153, 533
MspR9I	CCNGG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	8 cut(s)	65, 189, 342, 399, 413, 462, 471, 590
NarI	GGCGCC	1 cut(s)	281
NdeII	GATC	4 cut(s)	20, 177, 186, 346
NlaIV	GGNNCC	2 cut(s)	282, 469
NmuCI	GTSAC	3 cut(s)	160, 169, 538
PciSI	GCTCTTC	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 228, 258
PfeI	GAWTC	1 cut(s)	529
Ple19I	CGATCG	1 cut(s)	349
PleI	GAGTC	3 cut(s)	21, 302, 542
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	3 cut(s)	21, 302, 542
Psp6I	CCWGG	1 cut(s)	429
PspEI	GGTNACC	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	282, 469
PspPI	GGNCC	2 cut(s)	81, 438
PsuI	RGATCY	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	349
RgaI	GCGATCGC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	481
Sau3AI	GATC	4 cut(s)	20, 177, 186, 346
Sau96I	GGNCC	2 cut(s)	81, 438
SchI	GAGTC	3 cut(s)	22, 302, 542
ScrFI	CCNGG	1 cut(s)	431
SetI	ASST	6 cut(s)	204, 333, 338, 476, 540, 586
SfaAI	GCGATCGC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	570
SfoI	GGCGCC	1 cut(s)	282
SgfI	GCGATCGC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	438
SspDI	GGCGCC	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	567, 574
TaqI	TCGA	1 cut(s)	219
TauI	GCSGC	8 cut(s)	129, 257, 286, 405, 419, 468, 590, 593
TfiI	GAWTC	1 cut(s)	529
TseFI	GTSAC	3 cut(s)	160, 169, 538
TseI	GCWGC	2 cut(s)	399, 584
Tsp45I	GTSAC	3 cut(s)	160, 169, 538
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	3 cut(s)	320, 430, 541
VpaK11BI	GGWCC	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.