Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Forward (+)

24942188 .. 24944514

Gene Structure 2327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGAAATCCTAGCGTGAATGATCTCTCTCAAGTCCTCCCTCGCGTCCTTGTTGTCTCTAGACGCACTCTTCGCAAGAACAAATTTGTTGATTTCGTTGGTGAGTACCATCTTGATCTTATAGTCGAGAACGGTGCTGTACCGGTGATTGTCCCACGAGTGGCTGGTGTTCACAAGTTACTAGAGAGCTTCAAGCCCATCCATGGAGTTCTACTCTGTGAAGGAGAAGACATCGACCCTTCTCTTTACGAGTCCGAAATATCGTCCCTTTCACCTCAAGAACTCGACGAGATTCGGAAAACACACGCAAGTGATACAGCTATCGACAAAGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCCTTGAACAAAACATTCCTTACTTAGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTTGTGGTGGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGATCAAGGTTCCCGAGGAACATAAAAGAAACCATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAAGATAGTAAAAAACAGCCCTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGAAAAGATGGAGATCTTGGTCAACAGTTATCACCACCAAGGGGTTAAGAGATTGGCGCAAAGATTTGTGCCAATGGCTTTTGCTCCTGATGGATTGATTGAAGGGTTTTATGATCCTGATATGTACAATCCTGAAGAGGGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGGAAGAATGGTAGCGATGAATTTGATTTCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCAAAAGCAGTGATTGCATGTCAAAAGAAGGTGAATAGTTTCTTGTCTGTTCCTAAGAAATTGGAACTCAATCCAGAAATGGAGAACAAAAGAAAGATACTTGTCAGGAGCTTCTCGCTTGCGAGGTCTATGTACACCAGATCTCATTCGTTGAAGAACCAATCCACAGAATCAGAACTTGAAGTTGGAGCTGAGTTTCTTGAGTCAAATACCGCTCTAAGTGTACAACAAGAGATGAGGTTAAAAGAGATGGGAGCGACTATGAGGAATGGTGGATCATTTACGGAAAAGCTTAGGCTTGATGAAAAGAAGCAGAGGAAGGCTATGAACATAATGAAGAACATGAACATTGAGCGACTCTCTGAGCTCATGGCTTTCTACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGAGAGAAAGCTTCATGCTTCAGTCAGTGACCTCAATCTAACTCCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0022603 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065007 GO:1900618 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

433

Amino Acids

49.44

Weight (kDa)

6.1

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	32 - 257	8.6e-42	Peptidase C26
GATase	PF00117	116 - 262	7.2e-11	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1225
AccBSI	CCGCTC	1 cut(s)	1052
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	1050
AclWI	GGATC	2 cut(s)	704, 1120
AcsI	RAATTY	3 cut(s)	83, 797, 833
AcuI	CTGAAG	2 cut(s)	750, 1254
AfaI	GTAC	5 cut(s)	107, 141, 722, 971, 1062
AfiI	CCNNNNNNNGG	6 cut(s)	160, 203, 392, 637, 734, 1225
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	7 cut(s)	193, 374, 421, 580, 698, 991, 1019
AjnI	CCWGG	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	1005, 1037
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	8 cut(s)	189, 320, 364, 948, 1028, 1129, 1204, 1261
AluI	AGCT	8 cut(s)	189, 320, 364, 948, 1028, 1129, 1204, 1261
Alw21I	GWGCWC	1 cut(s)	1206
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	704, 1120
Ama87I	CYCGRG	1 cut(s)	482
ApoI	RAATTY	3 cut(s)	83, 797, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AsiGI	ACCGGT	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	655
AsuHPI	GGTGA	6 cut(s)	113, 157, 264, 553, 620, 880
AvaI	CYCGRG	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	1206
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	1206
BccI	CCATC	7 cut(s)	117, 206, 518, 598, 680, 1081, 1219
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	810
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	4 cut(s)	12, 60, 182, 1239
BglII	AGATCT	3 cut(s)	609, 977, 1233
Bme1390I	CCNGG	1 cut(s)	810
BmeT110I	CYCGRG	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	4 cut(s)	198, 230, 1181, 1213
Bpu10I	CCTNAGC	1 cut(s)	1130
BpuEI	CTTGAG	3 cut(s)	15, 261, 1058
BsaBI	GATNNNNATC	1 cut(s)	608
BsaJI	CCNNGG	4 cut(s)	202, 483, 634, 808
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	6 cut(s)	160, 203, 392, 637, 734, 1225
Bse118I	RCCGGY	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	4 cut(s)	202, 483, 634, 808
BseGI	GGATG	2 cut(s)	198, 763
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	6 cut(s)	160, 203, 392, 637, 734, 1225
BseMII	CTCAG	2 cut(s)	1020, 1191
BseRI	GAGGAG	1 cut(s)	1284
Bsh1236I	CGCG	1 cut(s)	45
BshTI	ACCGGT	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	1206
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	137, 250
BslI	CCNNNNNNNGG	6 cut(s)	160, 203, 392, 637, 734, 1225
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	137, 250
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	1206
Bsp1407I	TGTACA	3 cut(s)	720, 969, 1060
Bsp143I	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	1050
BspCNI	CTCAG	2 cut(s)	1021, 1192
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	704, 1120
BsrBI	CCGCTC	1 cut(s)	1052
BsrFI	RCCGGY	1 cut(s)	142
BsrGI	TGTACA	3 cut(s)	720, 969, 1060
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	4 cut(s)	202, 483, 634, 808
BssMI	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	202, 634
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	3 cut(s)	134, 623, 759
Bst6I	CTCTTC	2 cut(s)	75, 726
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstAUI	TGTACA	3 cut(s)	720, 969, 1060
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	6 cut(s)	391, 891, 1029, 1055, 1130, 1200
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	198, 763
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	8 cut(s)	25, 118, 474, 612, 712, 980, 1115, 1236
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 851
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	808
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	3 cut(s)	609, 977, 1233
BstYI	RGATCY	3 cut(s)	609, 977, 1233
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	807
BtsCI	GGATG	2 cut(s)	198, 763
BtsI	GCAGTG	1 cut(s)	852
BtsIMutI	CAGTG	2 cut(s)	852, 1282
Cac8I	GCNNGC	1 cut(s)	957
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	142
CseI	GACGC	2 cut(s)	34, 72
Csp6I	GTAC	5 cut(s)	106, 140, 721, 970, 1061
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	6 cut(s)	203, 536, 855, 1180, 1207, 1265
CviQI	GTAC	5 cut(s)	106, 140, 721, 970, 1061
DdeI	CTNAG	6 cut(s)	391, 891, 1029, 1055, 1130, 1200
DpnI	GATC	8 cut(s)	24, 117, 473, 611, 711, 979, 1114, 1235
DpnII	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
Eam1104I	CTCTTC	2 cut(s)	75, 726
EarI	CTCTTC	2 cut(s)	75, 726
Ecl136II	GAGCTC	1 cut(s)	1204
Eco130I	CCWWGG	2 cut(s)	202, 634
Eco24I	GRGCYC	1 cut(s)	1206
Eco53kI	GAGCTC	1 cut(s)	1204
Eco57I	CTGAAG	2 cut(s)	750, 1254
Eco88I	CYCGRG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	1204
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	202, 634
EcoT38I	GRGCYC	1 cut(s)	1206
ErhI	CCWWGG	2 cut(s)	202, 634
FaeI	CATG	6 cut(s)	206, 539, 858, 1183, 1210, 1268
FaqI	GGGAC	2 cut(s)	137, 250
FatI	CATG	6 cut(s)	202, 535, 854, 1179, 1206, 1264
FokI	GGATG	2 cut(s)	185, 750
FriOI	GRGCYC	1 cut(s)	1206
FspBI	CTAG	4 cut(s)	12, 60, 182, 1239
GlaI	GCGC	1 cut(s)	654
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	2 cut(s)	34, 72
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	6 cut(s)	206, 539, 858, 1183, 1210, 1268
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	1127, 1259
HinfI	GANTC	7 cut(s)	251, 292, 338, 584, 1007, 1040, 1194
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	6 cut(s)	113, 157, 264, 553, 620, 880
Hpy166II	GTNNAC	6 cut(s)	172, 410, 619, 755, 972, 1061
Hpy188I	TCNGA	4 cut(s)	256, 297, 1012, 1201
Hpy8I	GTNNAC	6 cut(s)	172, 410, 619, 755, 972, 1061
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	5 cut(s)	215, 249, 692, 859, 1150
HpyCH4III	ACNGT	3 cut(s)	134, 623, 759
HpyCH4V	TGCA	3 cut(s)	568, 839, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 851
HpyF3I	CTNAG	6 cut(s)	391, 891, 1029, 1055, 1130, 1200
Hsp92II	CATG	6 cut(s)	206, 539, 858, 1183, 1210, 1268
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
LmnI	GCTCC	4 cut(s)	685, 945, 1025, 1091
MaeI	CTAG	4 cut(s)	12, 60, 182, 1239
MaeIII	GTNAC	3 cut(s)	177, 466, 1277
MalI	GATC	8 cut(s)	24, 117, 473, 611, 711, 979, 1114, 1235
MbiI	CCGCTC	1 cut(s)	1052
MboI	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
MboII	GAAGA	9 cut(s)	62, 239, 556, 608, 743, 793, 1003, 1186, 1243
MflI	RGATCY	3 cut(s)	609, 977, 1233
MhlI	GDGCHC	1 cut(s)	1206
MluCI	AATT	4 cut(s)	83, 797, 833, 896
MlyI	GAGTC	4 cut(s)	260, 332, 1049, 1188
MmeI	TCCRAC	2 cut(s)	1003, 1230
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	2 cut(s)	642, 1079
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	810
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	72, 851
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
NlaIII	CATG	6 cut(s)	206, 539, 858, 1183, 1210, 1268
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	466, 1277
NspI	RCATGY	1 cut(s)	858
OliI	CACNNNNGTG	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	3 cut(s)	292, 584, 1007
PflMI	CCANNNNNTGG	1 cut(s)	1225
PinAI	ACCGGT	1 cut(s)	142
PleI	GAGTC	4 cut(s)	259, 332, 1048, 1188
PpsI	GAGTC	4 cut(s)	259, 332, 1048, 1188
Psp124BI	GAGCTC	1 cut(s)	1206
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	1 cut(s)	480
PsuI	RGATCY	3 cut(s)	609, 977, 1233
RsaI	GTAC	5 cut(s)	107, 141, 722, 971, 1062
RsaNI	GTAC	5 cut(s)	106, 140, 721, 970, 1061
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	1206
SaqAI	TTAA	2 cut(s)	642, 1079
Sau3AI	GATC	8 cut(s)	22, 115, 471, 609, 709, 977, 1112, 1233
SchI	GAGTC	4 cut(s)	260, 332, 1049, 1188
ScrFI	CCNGG	1 cut(s)	810
SduI	GDGCHC	1 cut(s)	1206
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	3 cut(s)	30, 276, 1037
SmoI	CTYRAG	3 cut(s)	30, 276, 1037
Sse9I	AATT	4 cut(s)	83, 797, 833, 896
SsiI	CCGC	1 cut(s)	1050
SspMI	CTAG	4 cut(s)	12, 60, 182, 1239
SstI	GAGCTC	1 cut(s)	1206
StyD4I	CCNGG	1 cut(s)	808
StyI	CCWWGG	2 cut(s)	202, 634
TaaI	ACNGT	3 cut(s)	134, 623, 759
TaqI	TCGA	4 cut(s)	126, 234, 285, 324
TasI	AATT	4 cut(s)	83, 797, 833, 896
TatI	WGTACW	3 cut(s)	720, 969, 1060
TfiI	GAWTC	3 cut(s)	292, 584, 1007
Tru1I	TTAA	2 cut(s)	642, 1079
Tru9I	TTAA	2 cut(s)	642, 1079
TscAI	CASTG	2 cut(s)	852, 1282
TseFI	GTSAC	2 cut(s)	466, 1277
Tsp45I	GTSAC	2 cut(s)	466, 1277
TspDTI	ATGAA	8 cut(s)	609, 752, 810, 1155, 1178, 1187, 1196, 1253
TspGWI	ACGGA	1 cut(s)	1136
TspRI	CASTG	2 cut(s)	852, 1282
Van91I	CCANNNNNTGG	1 cut(s)	1225
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	3 cut(s)	83, 797, 833
XbaI	TCTAGA	1 cut(s)	59
XceI	RCATGY	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	4 cut(s)	12, 60, 182, 1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.