Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Reverse (-)

16052827 .. 16054983

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G147100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGCTTCTGATCTCTCCGTCATCCTCCCTCGCGTTCTCATCGTCTCTAGACGTACCCTTCGCAAGAACAAGTTCGTGGATTTTGTGGGTGAATACCATCTTGATCTCATAGTAGGCTATGGAGCAGTGCCAGTGATTGTGCCCCGTGTCAATGGGGTCCACATGTTACTGGACAGCTTCGAGCCCATCCATGGAGTTCTGCTCTGTGAAGGAGAAGACATCGACCCATCGCTGTATGAAACAGAGGTGGATGTTTCAGGCCTTTCACCAGAAGAATTGGAAGAAATCAGGAGGCTTCATGCAAGTGACACAGCCATTGACAAAGAAAAAGACTCCATTGAAATGAGGCTGGCCAAGCTTTGCCTTGAAAGGAACATACCCTACTTGGGCATTTGCAGAGGCTCACAAGTCTTGAATGTGGCATGTGGAGGTACCCTTTACCAGGACATAGAGAAAGAGCTCTCCAAAAAACACAATGAAAATTATGAGTTAAAGCCTCAAAATGGGGTTCAAGTTCAACATATTAATTATGATGATTATGATGGGCACAGGCATGTGGTGCAGGTGGTGGAGGAGACCCCTTTGCATCAATGGTTTAAGGAGTCTGTGGAGAAAGAGGGGAAGATGGAGATTTGGGTTAATAGTTATCACCATCAGGGTGTTAAGAAATTGGCTCAGAGGTTTGTGCCAATGGCATTTGCACCAGATGGTTTGATTGAAGGGTTTTATGATCCAGATGCTTATAATCCTGAGGAAGGTAAGTTTATAATGGGGCTACAATTTCATCCAGAAAGAATGAGGAGGCCAGATTCAGATGAATTTGATTACCCTGGTTGCCCATCTGCTTATCAGGAATTTGTGAAGGCAGCAATTGCTTACAAGAACAAGGTTAATAGCTCAACTTCAGTTCCACAACCTTTGAAGCTTGATGGTGAAATGGAGATGAAGAGAAAGAAAATTGTCAGAAGTTTCTCACTTGCAAGAAACATATACAGTGGAGGCCTAGGAAGTGGTTTGCAACGAATCAAGGAATCTGAACTCGAAGCTGGAGCAGAATTCCTAGAGTCAAACACAGCATTGAGCTTACAGCAGGAGAATAGGCTAAAGCAAATGGGTGCAACAGTGAGAAATGCAGGGTCCTACATAGAGAGATTGAAATTGAATGAGGAGAGAGAAAGGTTAGCAAGGAATGTGATGGGGAAAATGTCAGTTGAGCAATTGTCTGATCTGTTGGCTTTCTACCATATGATGGGGCAAATCTGTTCTGAAGTTTTGGAAAGAAAGCTCAATGGGATTGTCAATGATATTGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

439

Amino Acids

49.79

Weight (kDa)

5.45

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	744, 767
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
Acc65I	GGTACC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	1249
AccII	CGCG	1 cut(s)	33
AclWI	GGATC	2 cut(s)	725, 1304
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	3 cut(s)	818, 854, 1055
AcuI	CTGAAG	2 cut(s)	888, 1287
AfaI	GTAC	2 cut(s)	55, 433
AfiI	CCNNNNNNNGG	6 cut(s)	191, 386, 442, 503, 755, 1249
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	9 cut(s)	341, 368, 415, 512, 518, 719, 922, 1156, 1162
AjnI	CCWGG	2 cut(s)	441, 829
AluBI	AGCT	8 cut(s)	177, 358, 460, 897, 925, 1046, 1083, 1285
AluI	AGCT	8 cut(s)	177, 358, 460, 897, 925, 1046, 1083, 1285
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	2 cut(s)	49, 569
AlwI	GGATC	2 cut(s)	725, 1304
AoxI	GGCC	4 cut(s)	259, 351, 803, 1000
ApeKI	GCWGC	1 cut(s)	866
ApoI	RAATTY	3 cut(s)	818, 854, 1055
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AseI	ATTAAT	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	431
AspA2I	CCTAGG	1 cut(s)	1003
AspS9I	GGNCC	2 cut(s)	157, 1137
AsuHPI	GGTGA	4 cut(s)	101, 258, 641, 944
AvaII	GGWCC	2 cut(s)	157, 1137
AvrII	CCTAGG	1 cut(s)	1003
AxyI	CCTNAGG	1 cut(s)	750
BaeGI	GKGCMC	2 cut(s)	144, 549
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	2 cut(s)	186, 462
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	878
BciT130I	CCWGG	2 cut(s)	443, 831
BcoDI	GTCTC	2 cut(s)	49, 569
BfaI	CTAG	3 cut(s)	48, 1004, 1061
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	1 cut(s)	867
BlnI	CCTAGG	1 cut(s)	1003
BlsI	GCNGC	1 cut(s)	868
Bme1390I	CCNGG	2 cut(s)	443, 831
Bme18I	GGWCC	2 cut(s)	157, 1137
BmgT120I	GGNCC	2 cut(s)	157, 1137
BmiI	GGNNCC	3 cut(s)	158, 433, 1138
BmrFI	CCNGG	2 cut(s)	443, 831
BmsI	GCATC	2 cut(s)	595, 727
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
BpmI	CTGGAG	1 cut(s)	1068
BsaBI	GATNNNNATC	1 cut(s)	1308
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	190, 829, 1003
Bsc4I	CCNNNNNNNGG	6 cut(s)	191, 386, 442, 503, 755, 1249
Bse1I	ACTGG	2 cut(s)	131, 174
Bse21I	CCTNAGG	1 cut(s)	750
Bse8I	GATNNNNATC	1 cut(s)	1308
BseBI	CCWGG	2 cut(s)	443, 831
BseDI	CCNNGG	3 cut(s)	190, 829, 1003
BseGI	GGATG	4 cut(s)	21, 186, 256, 784
BseJI	GATNNNNATC	1 cut(s)	1308
BseLI	CCNNNNNNNGG	6 cut(s)	191, 386, 442, 503, 755, 1249
BseMII	CTCAG	2 cut(s)	689, 741
BseNI	ACTGG	2 cut(s)	131, 174
BseRI	GAGGAG	3 cut(s)	587, 814, 1181
BseSI	GKGCMC	2 cut(s)	144, 549
BseXI	GCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	261, 353, 805, 1002
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	462
BslI	CCNNNNNNNGG	6 cut(s)	191, 386, 442, 503, 755, 1249
BsmAI	GTCTC	2 cut(s)	49, 569
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	261, 353, 805, 1002
Bso31I	GGTCTC	1 cut(s)	569
Bsp1286I	GDGCHC	4 cut(s)	144, 186, 462, 549
Bsp143I	GATC	5 cut(s)	10, 103, 730, 1225, 1309
Bsp19I	CCATGG	1 cut(s)	190
BspANI	GGCC	4 cut(s)	261, 353, 805, 1002
BspCNI	CTCAG	2 cut(s)	688, 742
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	158, 433, 1138
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	2 cut(s)	725, 1304
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	131, 174
BssECI	CCNNGG	3 cut(s)	190, 829, 1003
BssMI	GATC	5 cut(s)	10, 103, 730, 1225, 1309
BssT1I	CCWWGG	2 cut(s)	190, 1003
Bst2UI	CCWGG	2 cut(s)	443, 831
Bst4CI	ACNGT	2 cut(s)	995, 1123
Bst6I	CTCTTC	1 cut(s)	941
BstAPI	GCANNNNNTGC	2 cut(s)	559, 872
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	675, 750
BstDSI	CCRYGG	1 cut(s)	190
BstENI	CCTNNNNNAGG	2 cut(s)	440, 753
BstF5I	GGATG	4 cut(s)	21, 186, 256, 784
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	5 cut(s)	13, 106, 733, 1228, 1312
BstMAI	GTCTC	2 cut(s)	49, 569
BstMBI	GATC	5 cut(s)	10, 103, 730, 1225, 1309
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 559, 872
BstNI	CCWGG	2 cut(s)	443, 831
BstNSI	RCATGY	3 cut(s)	166, 426, 557
BstSCI	CCNGG	2 cut(s)	441, 829
BstSLI	GKGCMC	2 cut(s)	144, 549
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	878
BstV2I	GAAGAC	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	750
BsuRI	GGCC	4 cut(s)	261, 353, 805, 1002
BtgI	CCRYGG	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	4 cut(s)	21, 186, 256, 784
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	4 cut(s)	132, 138, 1000, 1128
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	157, 1137
Csp6I	GTAC	2 cut(s)	54, 432
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CviAII	CATG	5 cut(s)	163, 191, 299, 423, 554
CviQI	GTAC	2 cut(s)	54, 432
DdeI	CTNAG	2 cut(s)	675, 750
DpnI	GATC	5 cut(s)	12, 105, 732, 1227, 1311
DpnII	GATC	5 cut(s)	10, 103, 730, 1225, 1309
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	941
EarI	CTCTTC	1 cut(s)	941
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	190, 1003
Eco147I	AGGCCT	2 cut(s)	261, 1002
Eco24I	GRGCYC	2 cut(s)	186, 462
Eco31I	GGTCTC	1 cut(s)	569
Eco47I	GGWCC	2 cut(s)	157, 1137
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	888, 1287
Eco81I	CCTNAGG	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	2 cut(s)	440, 753
EcoO109I	RGGNCCY	1 cut(s)	1137
EcoRI	GAATTC	1 cut(s)	1055
EcoRII	CCWGG	2 cut(s)	441, 829
EcoT14I	CCWWGG	2 cut(s)	190, 1003
EcoT38I	GRGCYC	2 cut(s)	186, 462
ErhI	CCWWGG	2 cut(s)	190, 1003
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	5 cut(s)	166, 194, 302, 426, 557
FatI	CATG	5 cut(s)	162, 190, 298, 422, 553
FauNDI	CATATG	1 cut(s)	1245
Fnu4HI	GCNGC	1 cut(s)	867
FokI	GGATG	4 cut(s)	8, 173, 263, 771
FriOI	GRGCYC	2 cut(s)	186, 462
Fsp4HI	GCNGC	1 cut(s)	867
FspBI	CTAG	3 cut(s)	48, 1004, 1061
GluI	GCNGC	1 cut(s)	867
GsuI	CTGGAG	1 cut(s)	1068
HaeIII	GGCC	4 cut(s)	261, 353, 805, 1002
Hin1II	CATG	5 cut(s)	166, 194, 302, 426, 557
HindIII	AAGCTT	2 cut(s)	356, 923
HinfI	GANTC	6 cut(s)	332, 602, 809, 1023, 1031, 1064
HphI	GGTGA	4 cut(s)	101, 258, 641, 944
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	7 cut(s)	10, 678, 814, 965, 1036, 1225, 1267
Hpy188III	TCNNGA	8 cut(s)	48, 101, 289, 412, 734, 749, 788, 851
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	68, 203, 713, 749, 856
HpyCH4III	ACNGT	2 cut(s)	995, 1123
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	9 cut(s)	302, 396, 562, 586, 701, 980, 1018, 1118, 1133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 559, 872
HpyF3I	CTNAG	2 cut(s)	675, 750
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	5 cut(s)	166, 194, 302, 426, 557
KpnI	GGTACC	1 cut(s)	435
Kzo9I	GATC	5 cut(s)	10, 103, 730, 1225, 1309
LmnI	GCTCC	2 cut(s)	122, 1049
Lsp1109I	GCAGC	1 cut(s)	878
LweI	GCATC	2 cut(s)	595, 727
MaeI	CTAG	3 cut(s)	48, 1004, 1061
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	165, 305
MalI	GATC	5 cut(s)	12, 105, 732, 1227, 1311
MboI	GATC	5 cut(s)	10, 103, 730, 1225, 1309
MboII	GAAGA	5 cut(s)	227, 284, 293, 634, 958
MfeI	CAATTG	2 cut(s)	870, 1217
MhlI	GDGCHC	4 cut(s)	144, 186, 462, 549
MlsI	TGGCCA	1 cut(s)	353
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	326, 611, 1073
Mox20I	TGGCCA	1 cut(s)	353
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	6 cut(s)	491, 525, 597, 639, 663, 891
MslI	CAYNNNNRTG	4 cut(s)	303, 341, 552, 657
Msp20I	TGGCCA	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	443, 831
MunI	CAATTG	2 cut(s)	870, 1217
MvaI	CCWGG	2 cut(s)	443, 831
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	355, 559, 872
NcoI	CCATGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	1245
NdeII	GATC	5 cut(s)	10, 103, 730, 1225, 1309
NlaIII	CATG	5 cut(s)	166, 194, 302, 426, 557
NlaIV	GGNNCC	3 cut(s)	158, 433, 1138
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	3 cut(s)	166, 426, 557
PaqCI	CACCTGC	1 cut(s)	553
PceI	AGGCCT	2 cut(s)	261, 1002
PciI	ACATGT	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	809, 1023, 1031
PflMI	CCANNNNNTGG	1 cut(s)	1249
PkrI	GCNGC	1 cut(s)	868
PleI	GAGTC	3 cut(s)	326, 610, 1072
PpsI	GAGTC	3 cut(s)	326, 610, 1072
PpuMI	RGGWCCY	1 cut(s)	1137
PscI	ACATGT	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	525
PsiI	TTATAA	2 cut(s)	744, 767
Psp124BI	GAGCTC	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	1137
Psp6I	CCWGG	2 cut(s)	441, 829
PspGI	CCWGG	2 cut(s)	441, 829
PspN4I	GGNNCC	3 cut(s)	158, 433, 1138
PspPI	GGNCC	2 cut(s)	157, 1137
PspPPI	RGGWCCY	1 cut(s)	1137
PsrI	GAACNNNNNNTAC	2 cut(s)	365, 397
RsaI	GTAC	2 cut(s)	55, 433
RsaNI	GTAC	2 cut(s)	54, 432
RseI	CAYNNNNRTG	4 cut(s)	303, 341, 552, 657
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	6 cut(s)	491, 525, 597, 639, 663, 891
SatI	GCNGC	1 cut(s)	867
Sau3AI	GATC	5 cut(s)	10, 103, 730, 1225, 1309
Sau96I	GGNCC	2 cut(s)	157, 1137
SchI	GAGTC	3 cut(s)	326, 611, 1073
ScrFI	CCNGG	2 cut(s)	443, 831
SduI	GDGCHC	4 cut(s)	144, 186, 462, 549
SfaNI	GCATC	2 cut(s)	595, 727
SinI	GGWCC	2 cut(s)	157, 1137
SmiMI	CAYNNNNRTG	4 cut(s)	303, 341, 552, 657
SseBI	AGGCCT	2 cut(s)	261, 1002
SspMI	CTAG	3 cut(s)	48, 1004, 1061
SstI	GAGCTC	1 cut(s)	462
StuI	AGGCCT	2 cut(s)	261, 1002
StyD4I	CCNGG	2 cut(s)	441, 829
StyI	CCWWGG	2 cut(s)	190, 1003
TaaI	ACNGT	2 cut(s)	995, 1123
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	180, 222, 1041
TfiI	GAWTC	3 cut(s)	809, 1023, 1031
Tru1I	TTAA	6 cut(s)	491, 525, 597, 639, 663, 891
Tru9I	TTAA	6 cut(s)	491, 525, 597, 639, 663, 891
TscAI	CASTG	4 cut(s)	132, 138, 1000, 1128
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	866
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	6 cut(s)	252, 287, 492, 773, 831, 959
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	4 cut(s)	132, 138, 1000, 1128
Van91I	CCANNNNNTGG	1 cut(s)	1249
VpaK11BI	GGWCC	2 cut(s)	157, 1137
VspI	ATTAAT	1 cut(s)	525
XagI	CCTNNNNNAGG	2 cut(s)	440, 753
XapI	RAATTY	3 cut(s)	818, 854, 1055
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	3 cut(s)	166, 426, 557
XmaJI	CCTAGG	1 cut(s)	1003
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	3 cut(s)	48, 1004, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.