Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Forward (+)

10881806 .. 10882342

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0126400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAGCCAAACTCCTCCATCTCCTCGCTTCAAAACCAGTTGCACCACCCAACCTCGCCCTCGCCCTCGCCAAACCTACCTGTAACCACATCTTCCCACCCACCCGGCCGCACCATCTCAGAATCACTCCTATCTGCAGTAGCAGTGATGGTGGCAGCAGTACTAGCCCCGACACTACTGACAGAAACAGCGCGCCAACGCCGACAGACACCGTGGGAATACGGTTCAAGAAGAGGTCTAGAAAGAAGGCGAAGCAGCAGAGAGAGCAGAGGGAGGGTGAAGGCAGTGGTGAACGGTTCATCAAGGCTGAAGCTGCTGTTCCGAAGAAGTGGGAGGAAATGAGCCTGGGGGAACAGGCCTTGGAGCTTTACTTGGGGGAGAAGGGTTTGCTGTATTGGATAAACAAGTTTGCTTATGCTTCCATCTTCATTGTTATCGGAGCTTGGATTCTCTTCAGGTTCGTCGGGCCAGCGCTTAACCTTTACCAGTTGGACTCGGCTCCTCTTTCTCCTTCTGCCATCCTCAAGGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

178

Amino Acids

19.57

Weight (kDa)

9.63

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	330, 439
AfaI	GTAC	1 cut(s)	163
AfeI	AGCGCT	1 cut(s)	474
AgsI	TTSAA	2 cut(s)	33, 229
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	314, 367, 443
AluI	AGCT	3 cut(s)	314, 367, 443
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	3 cut(s)	107, 357, 467
ApeKI	GCWGC	3 cut(s)	156, 256, 314
AspLEI	GCGC	3 cut(s)	194, 196, 475
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	290, 302
BbvI	GCAGC	3 cut(s)	168, 268, 301
BccI	CCATC	5 cut(s)	27, 123, 143, 431, 527
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	2 cut(s)	165, 240
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	4 cut(s)	110, 157, 257, 315
BlsI	GCNGC	4 cut(s)	111, 158, 258, 316
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	106, 347
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	501, 532
BmrFI	CCNGG	2 cut(s)	106, 347
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	213, 346, 360
Bse1I	ACTGG	2 cut(s)	38, 487
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	213, 346, 360
BseGI	GGATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	2 cut(s)	38, 487
BsePI	GCGCGC	1 cut(s)	192
BseRI	GAGGAG	3 cut(s)	5, 14, 492
BseX3I	CGGCCG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	168, 268, 301
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	3 cut(s)	109, 359, 469
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	106
BsnI	GGCC	3 cut(s)	109, 359, 469
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	109, 359, 469
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	501, 532
BspMAI	CTGCAG	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	38, 487
BssECI	CCNNGG	3 cut(s)	213, 346, 360
BssHII	GCGCGC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	214, 225, 297
Bst6I	CTCTTC	2 cut(s)	227, 458
BstC8I	GCNNGC	2 cut(s)	194, 471
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	3 cut(s)	194, 196, 475
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 265, 314
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	104, 345
BstSFI	CTRYAG	1 cut(s)	136
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	168, 268, 301
BstZI	CGGCCG	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	109, 359, 469
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	519
BtsI	GCAGTG	2 cut(s)	151, 292
BtsIMutI	CAGTG	2 cut(s)	151, 292
Cac8I	GCNNGC	2 cut(s)	194, 471
CfoI	GCGC	3 cut(s)	194, 196, 475
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	162
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	107
EagI	CGGCCG	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	227, 458
EarI	CTCTTC	2 cut(s)	227, 458
EclXI	CGGCCG	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	359
Eco47III	AGCGCT	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	330, 439
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaiI	YATR	1 cut(s)	417
Fnu4HI	GCNGC	4 cut(s)	110, 157, 257, 315
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	4 cut(s)	110, 157, 257, 315
FspBI	CTAG	2 cut(s)	165, 240
GlaI	GCGC	3 cut(s)	193, 195, 474
GluI	GCNGC	4 cut(s)	110, 157, 257, 315
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	3 cut(s)	109, 359, 469
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	3 cut(s)	194, 196, 475
Hin6I	GCGC	3 cut(s)	192, 194, 473
HinP1I	GCGC	3 cut(s)	192, 194, 473
HinfI	GANTC	3 cut(s)	123, 448, 494
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	290, 302
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	122, 324, 440
Hpy188III	TCNNGA	3 cut(s)	229, 240, 534
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	4 cut(s)	241, 275, 376, 522
HpyCH4III	ACNGT	3 cut(s)	214, 225, 297
HpyCH4V	TGCA	2 cut(s)	44, 138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 265, 314
HpyF3I	CTNAG	1 cut(s)	119
HspAI	GCGC	3 cut(s)	192, 194, 473
LmnI	GCTCC	3 cut(s)	364, 440, 505
LpnPI	CCDG	9 cut(s)	51, 94, 119, 332, 341, 359, 442, 483, 500
Lsp1109I	GCAGC	3 cut(s)	168, 268, 301
MaeI	CTAG	2 cut(s)	165, 240
MaeIII	GTNAC	1 cut(s)	83
MboII	GAAGA	5 cut(s)	85, 244, 337, 418, 445
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	471
MseI	TTAA	1 cut(s)	477
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	106, 347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	165, 265, 314
NciI	CCSGG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	501, 532
NmeAIII	GCCGAG	1 cut(s)	476
PauI	GCGCGC	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	123, 448
PkrI	GCNGC	4 cut(s)	111, 158, 258, 316
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	501, 532
PspPI	GGNCC	1 cut(s)	467
PstI	CTGCAG	1 cut(s)	140
PteI	GCGCGC	1 cut(s)	192
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	110, 157, 257, 315
Sau96I	GGNCC	1 cut(s)	467
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	106, 347
SetI	ASST	9 cut(s)	57, 79, 83, 239, 316, 369, 445, 461, 483
SfcI	CTRYAG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	165, 240
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	104, 345
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	214, 225, 297
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	123, 448
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	2 cut(s)	151, 292
TseI	GCWGC	3 cut(s)	156, 256, 314
TspDTI	ATGAA	2 cut(s)	289, 418
TspRI	CASTG	2 cut(s)	151, 292
XbaI	TCTAGA	1 cut(s)	239
XspI	CTAG	2 cut(s)	165, 240
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.