FvH4_4g26770

Peptidase C26

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
28034808 .. 28038438
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26770.t1

Sequence Viewer

Length: 1302 bp
ATGATCAAGGACAAAGTAGTAACTCTCCCTTGCCTCATCAACTATCTCTCAATGGTTCTGCCTAGGGTTCTCATCGTCTCCCGCCGCACCGTCCGCAAGAACAAGTTTGTAGATTTCGTCGGAGAATATCATCTAGATCTAATTGTGAGCTATGGAGCAGTACCTATTATTGTTCCACGAGTCAGCGGAGTCCATACGCTACTCGAAAGCTTTGAACCGATCCATGGGGTTCTCCTATGCGAAGGGGAAGACATAGATCCATCAAATTACGACGCAGAGCTCTCGGGGTTCACCTCCGAGGAGCTTCAAGAAATCGGGAAGCTACATTCAAGTGACACAGCCATAGACAAAGAGAAAGACTCCATTGAACTGAGGCTGGCGAAGCTTTGCCTAGAGAAGAACATACCCTACTTGGGAATATGCCGAGGTTCGCAAGTCCTCAATGTGGCTTGTGGAGGTACATTGTACCAAGATGTGGAGAAGGAGCTCGAGAAAGAGTGCCCGGATCGGAATCAGAGAGTGACGCATATGAACTATGATGATTACGATGGACATAGACATGTGGTGAAGGTGGTGGAGAAGACTCCTCTTCATCAATGGTTTAGAGATTCTTTGGATGATGAGAAAATGGAGATGAGGGTTAATAGTTATCACCATCAAGGTGTTAAGAGATTGGCGCAGAGGTTTGTGCCAATGGCTTTCGCCCCTGATGGTTTGATCGAAGGGTTTTATGATCCGGATGCTTATAATCCTGATGAAGGTAAGTTCATCATGGGACTTCAATTTCATCCAGAGAGGATGCGGCAACCTGATTCGGATGATTTTGAGTATCCAGGATGTGCATATGCATACAAGGAGTTTGTTAAAGCAGTAGGAGCTTATCAAAAGAAGCTCCGTCAGTCGACGGAGTGCGTGCCGAAAGCTCCAAAGCTTAATCATGAGCTAGAGATGAAGAGGAAGAGCCTCCTAAGGAGCTTCTCAGTTGCCAAAAGCATGTATTCTAAGCGCGGAAGTATGGCAATCAAAGAATCTGAACTGGAAGTTGGAGCTGAGTTTCTAGAGTCAAATACAGCATTGAGTTTGCAGCAAGAAAAAAGGCTAAAGCAAATGGGTGCAACTGTGAGAAATGCTTCGGCGTATATGGAGCGAATGAAGATGGGCGAGGACAGGGAGAGAGTTGCAAGGGCCATCATTGGGAAAATGTCCATAGAGCAGATATCTGAATTGATGTCATTCTACCGCATCATGACTCAGATATGTTCCGACTCTTTAGAGAAGAAGTTAACAGACCAAGCAAGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

49.53

Weight (kDa)

6.11

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C26 PF07722 38 - 265 1.2e-40 Peptidase C26
GATase PF00117 123 - 271 3.3e-12 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AccB7I CCANNNNNTGG 1 cut(s) 475
AccI GTMKAC 1 cut(s) 902
AccII CGCG 1 cut(s) 1008
AccIII TCCGGA 1 cut(s) 736
AciI CCGC 7 cut(s) 82, 85, 94, 186, 802, 1008, 1240
AclWI GGATC 4 cut(s) 214, 251, 513, 728
AfaI GTAC 3 cut(s) 162, 460, 467
AfiI CCNNNNNNNGG 6 cut(s) 224, 413, 445, 475, 758, 1194
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 5 cut(s) 215, 308, 330, 368, 782
AjnI CCWGG 1 cut(s) 832
AjuI GAANNNNNNNTTGG 2 cut(s) 1026, 1058
Alw21I GWGCWC 2 cut(s) 282, 489
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 4 cut(s) 214, 251, 513, 728
Ama87I CYCGRG 2 cut(s) 283, 488
Aor13HI TCCGGA 1 cut(s) 736
AoxI GGCC 1 cut(s) 1185
ApeKI GCWGC 1 cut(s) 1084
Asp700I GAANNNNTTC 1 cut(s) 1129
AspA2I CCTAGG 1 cut(s) 62
AspLEI GCGC 2 cut(s) 679, 1008
AspS9I GGNCC 1 cut(s) 1185
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 3 cut(s) 283, 577, 644
AvaI CYCGRG 2 cut(s) 283, 488
AvrII CCTAGG 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 968
BaeGI GKGCMC 1 cut(s) 503
BanII GRGCYC 2 cut(s) 282, 489
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 255, 587
Bbv12I GWGCWC 2 cut(s) 282, 489
BbvI GCAGC 1 cut(s) 1096
BccI CCATC 6 cut(s) 268, 542, 663, 704, 1150, 1196
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BciT130I CCWGG 1 cut(s) 834
BciVI GTATCC 1 cut(s) 840
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 5 cut(s) 63, 134, 392, 944, 1058
BfuI GTATCC 1 cut(s) 840
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 85, 803, 1085
BlnI CCTAGG 1 cut(s) 62
BlsI GCNGC 3 cut(s) 86, 804, 1086
Bme1390I CCNGG 2 cut(s) 503, 834
BmeT110I CYCGRG 2 cut(s) 283, 488
BmgT120I GGNCC 1 cut(s) 1185
BmrFI CCNGG 2 cut(s) 503, 834
BmsI GCATC 3 cut(s) 730, 789, 1251
BpiI GAAGAC 2 cut(s) 255, 587
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpuMI CCSGG 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 4 cut(s) 62, 223, 297, 424
BsaWI WCCGGW 1 cut(s) 736
Bsc4I CCNNNNNNNGG 6 cut(s) 224, 413, 445, 475, 758, 1194
Bse1I ACTGG 1 cut(s) 1041
Bse21I CCTNAGG 1 cut(s) 968
Bse8I GATNNNNATC 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 736
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 4 cut(s) 62, 223, 297, 424
BseGI GGATG 6 cut(s) 622, 745, 787, 804, 823, 842
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 6 cut(s) 224, 413, 445, 475, 758, 1194
BseMII CTCAG 4 cut(s) 362, 993, 1041, 1265
BseNI ACTGG 1 cut(s) 1041
BseRI GAGGAG 2 cut(s) 314, 576
BseSI GKGCMC 1 cut(s) 503
BseXI GCAGC 1 cut(s) 1096
Bsh1236I CGCG 1 cut(s) 1008
BshFI GGCC 1 cut(s) 1187
BsiHKAI GWGCWC 2 cut(s) 282, 489
BsiHKCI CYCGRG 2 cut(s) 283, 488
BsiSI CCGG 2 cut(s) 503, 737
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 6 cut(s) 224, 413, 445, 475, 758, 1194
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 789
BsnI GGCC 1 cut(s) 1187
BsoBI CYCGRG 2 cut(s) 283, 488
Bsp1286I GDGCHC 3 cut(s) 282, 489, 503
Bsp13I TCCGGA 1 cut(s) 736
Bsp143I GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 7 cut(s) 82, 85, 94, 186, 802, 1008, 1240
BspANI GGCC 1 cut(s) 1187
BspCNI CTCAG 4 cut(s) 363, 992, 1042, 1264
BspEI TCCGGA 1 cut(s) 736
BspFNI CGCG 1 cut(s) 1008
BspHI TCATGA 2 cut(s) 937, 1245
BspPI GGATC 4 cut(s) 214, 251, 513, 728
BspQI GCTCTTC 1 cut(s) 953
BsrI ACTGG 1 cut(s) 1041
BssECI CCNNGG 4 cut(s) 62, 223, 297, 424
BssMI GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 62, 223
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 91, 1120
Bst6I CTCTTC 3 cut(s) 594, 947, 953
BstC8I GCNNGC 2 cut(s) 378, 914
BstDEI CTNAG 6 cut(s) 371, 968, 979, 1002, 1050, 1251
BstDSI CCRYGG 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 756
BstF5I GGATG 6 cut(s) 622, 745, 787, 804, 823, 842
BstFNI CGCG 1 cut(s) 1008
BstHHI GCGC 2 cut(s) 679, 1008
BstKTI GATC 7 cut(s) 6, 139, 222, 259, 508, 720, 736
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
BstMWI GCNNNNNNNGC 3 cut(s) 93, 382, 875
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 2 cut(s) 563, 997
BstSCI CCNGG 2 cut(s) 501, 832
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 1 cut(s) 1008
BstV1I GCAGC 1 cut(s) 1096
BstV2I GAAGAC 2 cut(s) 255, 587
BstX2I RGATCY 2 cut(s) 136, 256
BstYI RGATCY 2 cut(s) 136, 256
Bsu36I CCTNAGG 1 cut(s) 968
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 1 cut(s) 1187
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 6 cut(s) 622, 745, 787, 804, 823, 842
Cac8I GCNNGC 2 cut(s) 378, 914
CciI TCATGA 2 cut(s) 937, 1245
CfoI GCGC 2 cut(s) 679, 1008
Cfr13I GGNCC 1 cut(s) 1185
CseI GACGC 2 cut(s) 281, 532
Csp6I GTAC 3 cut(s) 161, 459, 466
CviAII CATG 6 cut(s) 224, 560, 772, 938, 994, 1246
CviQI GTAC 3 cut(s) 161, 459, 466
DdeI CTNAG 6 cut(s) 371, 968, 979, 1002, 1050, 1251
DpnI GATC 7 cut(s) 5, 138, 221, 258, 507, 719, 735
DpnII GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
Eam1104I CTCTTC 3 cut(s) 594, 947, 953
EarI CTCTTC 3 cut(s) 594, 947, 953
Ecl136II GAGCTC 2 cut(s) 280, 487
Eco130I CCWWGG 2 cut(s) 62, 223
Eco24I GRGCYC 2 cut(s) 282, 489
Eco32I GATATC 1 cut(s) 1218
Eco53kI GAGCTC 2 cut(s) 280, 487
Eco81I CCTNAGG 1 cut(s) 968
Eco88I CYCGRG 2 cut(s) 283, 488
EcoICRI GAGCTC 2 cut(s) 280, 487
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 1218
EcoT14I CCWWGG 2 cut(s) 62, 223
EcoT22I ATGCAT 1 cut(s) 850
EcoT38I GRGCYC 2 cut(s) 282, 489
ErhI CCWWGG 2 cut(s) 62, 223
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 6 cut(s) 227, 563, 775, 941, 997, 1249
FaqI GGGAC 1 cut(s) 789
FatI CATG 6 cut(s) 223, 559, 771, 937, 993, 1245
FauI CCCGC 1 cut(s) 89
FauNDI CATATG 2 cut(s) 528, 844
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 3 cut(s) 85, 803, 1085
FokI GGATG 6 cut(s) 629, 752, 774, 811, 830, 849
FriOI GRGCYC 2 cut(s) 282, 489
Fsp4HI GCNGC 3 cut(s) 85, 803, 1085
FspBI CTAG 5 cut(s) 63, 134, 392, 944, 1058
GlaI GCGC 2 cut(s) 678, 1007
GluI GCNGC 3 cut(s) 85, 803, 1085
HaeIII GGCC 1 cut(s) 1187
HapII CCGG 2 cut(s) 503, 737
HgaI GACGC 2 cut(s) 281, 532
HhaI GCGC 2 cut(s) 679, 1008
Hin1II CATG 6 cut(s) 227, 563, 775, 941, 997, 1249
Hin6I GCGC 2 cut(s) 677, 1006
HinP1I GCGC 2 cut(s) 677, 1006
HincII GTYRAC 2 cut(s) 903, 1284
HindII GTYRAC 2 cut(s) 903, 1284
HindIII AAGCTT 3 cut(s) 208, 383, 929
HpaI GTTAAC 1 cut(s) 1284
HpaII CCGG 2 cut(s) 503, 737
HphI GGTGA 3 cut(s) 283, 577, 644
Hpy166II GTNNAC 3 cut(s) 291, 903, 1284
Hpy188I TCNGA 9 cut(s) 122, 298, 510, 516, 817, 1033, 1222, 1254, 1264
Hpy8I GTNNAC 3 cut(s) 291, 903, 1284
Hpy99I CGWCG 3 cut(s) 122, 275, 907
HpyAV CCTTC 5 cut(s) 236, 475, 562, 716, 752
HpyCH4III ACNGT 2 cut(s) 91, 1120
HpyCH4V TGCA 5 cut(s) 842, 848, 1084, 1115, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 382, 875
HpyF3I CTNAG 6 cut(s) 371, 968, 979, 1002, 1050, 1251
Hsp92II CATG 6 cut(s) 227, 563, 775, 941, 997, 1249
HspAI GCGC 2 cut(s) 677, 1006
Kpn2I TCCGGA 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 1284
Kzo9I GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
LguI GCTCTTC 1 cut(s) 953
LmnI GCTCC 9 cut(s) 155, 301, 484, 875, 897, 928, 972, 1046, 1144
Lsp1109I GCAGC 1 cut(s) 1096
LweI GCATC 3 cut(s) 730, 789, 1251
MaeI CTAG 5 cut(s) 63, 134, 392, 944, 1058
MaeIII GTNAC 3 cut(s) 19, 332, 520
MalI GATC 7 cut(s) 5, 138, 221, 258, 507, 719, 735
MboI GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
MboII GAAGA 8 cut(s) 260, 409, 581, 592, 964, 970, 1165, 1288
MflI RGATCY 2 cut(s) 136, 256
MhlI GDGCHC 3 cut(s) 282, 489, 503
MluCI AATT 4 cut(s) 141, 265, 782, 1223
MlyI GAGTC 7 cut(s) 189, 198, 353, 577, 1070, 1243, 1259
MmeI TCCRAC 3 cut(s) 100, 1024, 1287
Mph1103I ATGCAT 1 cut(s) 850
MroI TCCGGA 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 1129
MseI TTAA 5 cut(s) 642, 666, 864, 933, 1283
MslI CAYNNNNRTG 3 cut(s) 330, 558, 660
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 2 cut(s) 503, 737
MspR9I CCNGG 2 cut(s) 503, 834
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 1 cut(s) 1008
MwoI GCNNNNNNNGC 3 cut(s) 93, 382, 875
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 223
NdeI CATATG 2 cut(s) 528, 844
NdeII GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
NlaIII CATG 6 cut(s) 227, 563, 775, 941, 997, 1249
NmeAIII GCCGAG 1 cut(s) 449
NmuCI GTSAC 2 cut(s) 332, 520
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 2 cut(s) 563, 997
PaeR7I CTCGAG 1 cut(s) 488
PagI TCATGA 2 cut(s) 937, 1245
PciI ACATGT 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 953
PdmI GAANNNNTTC 1 cut(s) 1129
PfeI GAWTC 4 cut(s) 511, 608, 812, 1028
PflMI CCANNNNNTGG 1 cut(s) 475
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 3 cut(s) 86, 804, 1086
PleI GAGTC 7 cut(s) 188, 197, 353, 577, 1069, 1243, 1259
PpsI GAGTC 7 cut(s) 188, 197, 353, 577, 1069, 1243, 1259
PscI ACATGT 1 cut(s) 559
PsiI TTATAA 1 cut(s) 747
Psp124BI GAGCTC 2 cut(s) 282, 489
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspPI GGNCC 1 cut(s) 1185
PsrI GAACNNNNNNTAC 2 cut(s) 392, 424
PsuI RGATCY 2 cut(s) 136, 256
RsaI GTAC 3 cut(s) 162, 460, 467
RsaNI GTAC 3 cut(s) 161, 459, 466
RseI CAYNNNNRTG 3 cut(s) 330, 558, 660
SacI GAGCTC 2 cut(s) 282, 489
SalI GTCGAC 1 cut(s) 901
SapI GCTCTTC 1 cut(s) 953
SaqAI TTAA 5 cut(s) 642, 666, 864, 933, 1283
SatI GCNGC 3 cut(s) 85, 803, 1085
Sau3AI GATC 7 cut(s) 3, 136, 219, 256, 505, 717, 733
Sau96I GGNCC 1 cut(s) 1185
SchI GAGTC 7 cut(s) 189, 198, 353, 577, 1070, 1243, 1259
ScrFI CCNGG 2 cut(s) 503, 834
SduI GDGCHC 3 cut(s) 282, 489, 503
SfaNI GCATC 3 cut(s) 730, 789, 1251
Sfr274I CTCGAG 1 cut(s) 488
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 3 cut(s) 330, 558, 660
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 4 cut(s) 141, 265, 782, 1223
SsiI CCGC 7 cut(s) 82, 85, 94, 186, 802, 1008, 1240
SspMI CTAG 5 cut(s) 63, 134, 392, 944, 1058
SstI GAGCTC 2 cut(s) 282, 489
StyD4I CCNGG 2 cut(s) 501, 832
StyI CCWWGG 2 cut(s) 62, 223
TaaI ACNGT 2 cut(s) 91, 1120
TaqI TCGA 4 cut(s) 204, 489, 720, 902
TasI AATT 4 cut(s) 141, 265, 782, 1223
TauI GCSGC 2 cut(s) 87, 805
TfiI GAWTC 4 cut(s) 511, 608, 812, 1028
Tru1I TTAA 5 cut(s) 642, 666, 864, 933, 1283
Tru9I TTAA 5 cut(s) 642, 666, 864, 933, 1283
TseFI GTSAC 2 cut(s) 332, 520
TseI GCWGC 1 cut(s) 1084
Tsp45I GTSAC 2 cut(s) 332, 520
TspDTI ATGAA 7 cut(s) 545, 581, 757, 771, 776, 965, 1166
TspGWI ACGGA 2 cut(s) 884, 920
Van91I CCANNNNNTGG 1 cut(s) 475
XagI CCTNNNNNAGG 1 cut(s) 756
XbaI TCTAGA 2 cut(s) 133, 1057
XceI RCATGY 2 cut(s) 563, 997
XhoI CTCGAG 1 cut(s) 488
XmaJI CCTAGG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 1129
XspI CTAG 5 cut(s) 63, 134, 392, 944, 1058
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.