Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Reverse (-)

9014270 .. 9016458

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15830.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTATTCTGATCTGTCTGTGATCCTTCCTCGAGTTCTCATCGTCTCTAGACGTACGATTCGCAAGAACAAGTTCGTGGATTTTGTGGGTGAATATCATCTCGATCTTATAATTAGGTATGGCGCAGTTCCAGTAATTGTTCCCCGAGTAAATGGAGTGCATATGTTACTGGAGAGCTTCGAGCCCATTCATGGAGTTATGCTTTGTGAAGGAGAGGATATTGATCCATCTCTTTACCAAAGCGGCGGCGACGACGACGTTTCCAAGGAAGAACTAGAAGAAATCAGGAGGCTTCATGTAAGCGACACGGCCATAGATAAGGAGAAAGATTCAATCGAGTTGAGGCTTGCCAAGCTTTGCCTCGAGAGAAACATACCCTACTTGGGAATCTGCAGAGGCTCACAAGTCTTGAATGTTGCATGTGGAGGTACCCTTTACCAGGACATAGAAACCGAGCTCGGAAAGCACTCCAAGGTTGATGGGAGTAAGGTTCAGCATATAAACTACGACGACTACGATGGACATAGGCATGAGGTTGAGGTGGTTGAAGATACTCCATTGCACCATTGGTTTAAGGAGGAGGAGCTTAACGAGAGAGGCAAGTTGGAGATTAGGGTTAATAGTTATCACCATCAAGGTGTTAAGAGATTGGCTCACCGTTTTGTGCCAATGGCTTTTGCAAGAGATGGTTTGGTTGAAGCATTTTATGATCCTGATGCTTATAATCCTGACCAAGGTAAGTTTATTATGGGACTCCAATTCCATCCCGAAAGAATGAGAAGGCCCGAGCCTGACCAATTTGATTATCCCGGTTGCCCATCTGCCTATAAGGAGTTTGTCAAAGCAGCAGTTGCTTACCAGCAGAAGCTTAATACCTCAAGCTCCTCATCATCTGTGCCATCACAGTTGCCTACAAAGCTTGATAGCGAAGTGGAGATAAAGAGAGACAGGATAGTAAGGAGTTTCTCAATTGCCAGAAACTTATATACTGGTGGTCGTGGCACTATGCATTCTATCAAAGAATCTGAACTCGAAGCCGGGGCAGAGTTCCTAGAGTCAAATGCAGCTTTGAGTTTACAACAGCAGAATAGACTAAAGCAAATGGGGGCAACAGTGAGGAATGCAGGTTCCTACATAGAGAGACTGAAGTTGAACGAGGGAAGAGAGAAACAAGCGAGGAACGTGATGGCGAAAATGTCCGTTGAGCAGTTATCTGATCTCATGGGTTTTTACCATATGATGGGACAAATTTGCTCCGAAGTGTTGGAGAAAAAGCTAAACGGCATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

431

Amino Acids

49.0

Weight (kDa)

5.97

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	28 - 257	5.6e-42	Peptidase C26
GATase	PF00117	111 - 263	9e-12	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	110, 723
Acc36I	ACCTGC	1 cut(s)	1115
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	1240
AciI	CCGC	2 cut(s)	243, 246
AclWI	GGATC	3 cut(s)	16, 218, 704
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	1248
AcuI	CTGAAG	1 cut(s)	1166
AfaI	GTAC	2 cut(s)	55, 430
AfiI	CCNNNNNNNGG	5 cut(s)	191, 383, 439, 734, 1240
AgsI	TTSAA	5 cut(s)	333, 412, 548, 698, 1153
AjnI	CCWGG	1 cut(s)	438
AloI	GAACNNNNNNTCC	2 cut(s)	1111, 1143
AluBI	AGCT	9 cut(s)	177, 355, 457, 586, 868, 882, 919, 1067, 1276
AluI	AGCT	9 cut(s)	177, 355, 457, 586, 868, 882, 919, 1067, 1276
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	3 cut(s)	49, 939, 1135
AlwI	GGATC	3 cut(s)	16, 218, 704
Ama87I	CYCGRG	4 cut(s)	30, 144, 362, 785
AoxI	GGCC	2 cut(s)	309, 782
ApeKI	GCWGC	2 cut(s)	845, 1064
ApoI	RAATTY	1 cut(s)	1248
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	783
AsuC2I	CCSGG	2 cut(s)	810, 1039
AsuHPI	GGTGA	3 cut(s)	101, 620, 647
AvaI	CYCGRG	4 cut(s)	30, 144, 362, 785
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	2 cut(s)	186, 459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	857, 1076
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	440
BcnI	CCSGG	2 cut(s)	810, 1039
BcoDI	GTCTC	3 cut(s)	49, 939, 1135
BfaI	CTAG	3 cut(s)	48, 275, 1052
BfmI	CTRYAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	1115
BisI	GCNGC	4 cut(s)	244, 247, 846, 1065
BlsI	GCNGC	4 cut(s)	245, 248, 847, 1066
Bme1390I	CCNGG	3 cut(s)	440, 810, 1039
BmeT110I	CYCGRG	4 cut(s)	30, 144, 362, 785
BmgT120I	GGNCC	1 cut(s)	783
BmiI	GGNNCC	2 cut(s)	430, 1129
BmrFI	CCNGG	3 cut(s)	440, 810, 1039
BmsI	GCATC	1 cut(s)	706
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	862
BpuMI	CCSGG	2 cut(s)	810, 1039
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	264, 471, 733, 1038
Bsc4I	CCNNNNNNNGG	5 cut(s)	191, 383, 439, 734, 1240
Bse1I	ACTGG	3 cut(s)	131, 174, 994
Bse3DI	GCAATG	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	4 cut(s)	264, 471, 733, 1038
BseGI	GGATG	1 cut(s)	763
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	5 cut(s)	191, 383, 439, 734, 1240
BseMI	GCAATG	1 cut(s)	557
BseNI	ACTGG	3 cut(s)	131, 174, 994
BseRI	GAGGAG	3 cut(s)	593, 596, 874
BseXI	GCAGC	2 cut(s)	857, 1076
BshFI	GGCC	2 cut(s)	311, 784
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	4 cut(s)	30, 144, 362, 785
BsiSI	CCGG	2 cut(s)	810, 1038
BsiWI	CGTACG	1 cut(s)	53
BslFI	GGGAC	2 cut(s)	765, 1257
BslI	CCNNNNNNNGG	5 cut(s)	191, 383, 439, 734, 1240
BsmAI	GTCTC	3 cut(s)	49, 939, 1135
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	2 cut(s)	765, 1257
BsmI	GAATGC	2 cut(s)	1009, 1126
BsnI	GGCC	2 cut(s)	311, 784
BsoBI	CYCGRG	4 cut(s)	30, 144, 362, 785
Bsp1286I	GDGCHC	2 cut(s)	186, 459
Bsp143I	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
BspACI	CCGC	2 cut(s)	243, 246
BspANI	GGCC	2 cut(s)	311, 784
BspLI	GGNNCC	2 cut(s)	430, 1129
BspMAI	CTGCAG	1 cut(s)	395
BspMI	ACCTGC	1 cut(s)	1115
BspPI	GGATC	3 cut(s)	16, 218, 704
BspT107I	GGYRCC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	557
BsrI	ACTGG	3 cut(s)	131, 174, 994
BssECI	CCNNGG	4 cut(s)	264, 471, 733, 1038
BssMI	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
BssT1I	CCWWGG	3 cut(s)	264, 471, 733
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	659, 906, 1114
Bst6I	CTCTTC	1 cut(s)	1156
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstC8I	GCNNGC	2 cut(s)	348, 1286
BstENI	CCTNNNNNAGG	2 cut(s)	437, 732
BstF5I	GGATG	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	6 cut(s)	13, 24, 106, 226, 712, 1219
BstMAI	GTCTC	3 cut(s)	49, 939, 1135
BstMBI	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
BstMWI	GCNNNNNNNGC	4 cut(s)	352, 463, 851, 916
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	2 cut(s)	423, 1288
BstSCI	CCNGG	3 cut(s)	438, 808, 1037
BstSFI	CTRYAG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	857, 1076
BsuRI	GGCC	2 cut(s)	311, 784
BtsCI	GGATG	1 cut(s)	763
BtsIMutI	CAGTG	1 cut(s)	1119
BveI	ACCTGC	1 cut(s)	1115
Cac8I	GCNNGC	2 cut(s)	348, 1286
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	783
Csp6I	GTAC	2 cut(s)	54, 429
CviAII	CATG	6 cut(s)	191, 296, 420, 530, 1222, 1285
CviQI	GTAC	2 cut(s)	54, 429
DpnI	GATC	6 cut(s)	12, 23, 105, 225, 711, 1218
DpnII	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	1156
EarI	CTCTTC	1 cut(s)	1156
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	3 cut(s)	264, 471, 733
Eco24I	GRGCYC	2 cut(s)	186, 459
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	1166
Eco88I	CYCGRG	4 cut(s)	30, 144, 362, 785
EcoICRI	GAGCTC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	2 cut(s)	437, 732
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	3 cut(s)	264, 471, 733
EcoT22I	ATGCAT	2 cut(s)	1011, 1290
EcoT38I	GRGCYC	2 cut(s)	186, 459
ErhI	CCWWGG	3 cut(s)	264, 471, 733
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	6 cut(s)	194, 299, 423, 533, 1225, 1288
FaqI	GGGAC	2 cut(s)	765, 1257
FatI	CATG	6 cut(s)	190, 295, 419, 529, 1221, 1284
FauNDI	CATATG	2 cut(s)	162, 1236
Fnu4HI	GCNGC	4 cut(s)	244, 247, 846, 1065
FokI	GGATG	1 cut(s)	750
FriOI	GRGCYC	2 cut(s)	186, 459
Fsp4HI	GCNGC	4 cut(s)	244, 247, 846, 1065
FspBI	CTAG	3 cut(s)	48, 275, 1052
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	4 cut(s)	244, 247, 846, 1065
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	311, 784
HapII	CCGG	2 cut(s)	810, 1038
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	6 cut(s)	194, 299, 423, 533, 1225, 1288
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	3 cut(s)	353, 866, 917
HinfI	GANTC	6 cut(s)	58, 329, 387, 753, 1022, 1055
HpaII	CCGG	2 cut(s)	810, 1038
HphI	GGTGA	3 cut(s)	101, 620, 647
Hpy166II	GTNNAC	1 cut(s)	1076
Hpy188I	TCNGA	5 cut(s)	10, 461, 1027, 1216, 1258
Hpy188III	TCNNGA	8 cut(s)	48, 101, 286, 364, 409, 713, 728, 767
Hpy8I	GTNNAC	1 cut(s)	1076
Hpy99I	CGWCG	4 cut(s)	254, 257, 260, 512
HpyAV	CCTTC	3 cut(s)	35, 203, 774
HpyCH4III	ACNGT	3 cut(s)	659, 906, 1114
HpyCH4IV	ACGT	3 cut(s)	52, 258, 1182
HpyCH4V	TGCA	9 cut(s)	160, 393, 419, 562, 680, 1009, 1064, 1124, 1288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	352, 463, 851, 916
HpySE526I	ACGT	3 cut(s)	52, 258, 1182
Hsp92II	CATG	6 cut(s)	194, 299, 423, 533, 1225, 1288
HspAI	GCGC	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	432
Kzo9I	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
LmnI	GCTCC	3 cut(s)	583, 887, 1259
Lsp1109I	GCAGC	2 cut(s)	857, 1076
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	3 cut(s)	48, 275, 1052
MaeII	ACGT	3 cut(s)	52, 258, 1182
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	6 cut(s)	12, 23, 105, 225, 711, 1218
MboI	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
MboII	GAAGA	4 cut(s)	281, 290, 560, 1173
MfeI	CAATTG	1 cut(s)	969
MhlI	GDGCHC	2 cut(s)	186, 459
MluCI	AATT	6 cut(s)	111, 135, 758, 797, 969, 1248
MlyI	GAGTC	2 cut(s)	747, 1064
MmeI	TCCRAC	2 cut(s)	585, 1245
Mph1103I	ATGCAT	2 cut(s)	1011, 1290
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	6 cut(s)	573, 588, 618, 642, 870, 1291
MslI	CAYNNNNRTG	2 cut(s)	528, 636
MspI	CCGG	2 cut(s)	810, 1038
MspR9I	CCNGG	3 cut(s)	440, 810, 1039
MunI	CAATTG	1 cut(s)	969
Mva1269I	GAATGC	2 cut(s)	1009, 1126
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	352, 463, 851, 916
NciI	CCSGG	2 cut(s)	810, 1039
NdeI	CATATG	2 cut(s)	162, 1236
NdeII	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
NlaIII	CATG	6 cut(s)	194, 299, 423, 533, 1225, 1288
NlaIV	GGNNCC	2 cut(s)	430, 1129
NsiI	ATGCAT	2 cut(s)	1011, 1290
NspI	RCATGY	2 cut(s)	423, 1288
PaeI	GCATGC	1 cut(s)	1288
PaeR7I	CTCGAG	2 cut(s)	30, 362
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PctI	GAATGC	2 cut(s)	1009, 1126
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	4 cut(s)	58, 329, 387, 1022
Pfl23II	CGTACG	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	1240
PkrI	GCNGC	4 cut(s)	245, 248, 847, 1066
PleI	GAGTC	2 cut(s)	747, 1063
PpsI	GAGTC	2 cut(s)	747, 1063
PsiI	TTATAA	2 cut(s)	110, 723
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspLI	CGTACG	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	430, 1129
PspPI	GGNCC	1 cut(s)	783
PspXI	VCTCGAGB	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	55, 430
RsaNI	GTAC	2 cut(s)	54, 429
RseI	CAYNNNNRTG	2 cut(s)	528, 636
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	6 cut(s)	573, 588, 618, 642, 870, 1291
SatI	GCNGC	4 cut(s)	244, 247, 846, 1065
Sau3AI	GATC	6 cut(s)	10, 21, 103, 223, 709, 1216
Sau96I	GGNCC	1 cut(s)	783
SchI	GAGTC	2 cut(s)	747, 1064
ScrFI	CCNGG	3 cut(s)	440, 810, 1039
SduI	GDGCHC	2 cut(s)	186, 459
SfaNI	GCATC	1 cut(s)	706
SfcI	CTRYAG	1 cut(s)	391
Sfr274I	CTCGAG	2 cut(s)	30, 362
SlaI	CTCGAG	2 cut(s)	30, 362
SmiMI	CAYNNNNRTG	2 cut(s)	528, 636
SmlI	CTYRAG	3 cut(s)	30, 362, 877
SmoI	CTYRAG	3 cut(s)	30, 362, 877
SphI	GCATGC	1 cut(s)	1288
Sse9I	AATT	6 cut(s)	111, 135, 758, 797, 969, 1248
SsiI	CCGC	2 cut(s)	243, 246
SspMI	CTAG	3 cut(s)	48, 275, 1052
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	438, 808, 1037
StyI	CCWWGG	3 cut(s)	264, 471, 733
TaaI	ACNGT	3 cut(s)	659, 906, 1114
TaiI	ACGT	3 cut(s)	55, 261, 1185
TaqI	TCGA	6 cut(s)	31, 102, 180, 336, 363, 1032
TasI	AATT	6 cut(s)	111, 135, 758, 797, 969, 1248
TauI	GCSGC	2 cut(s)	246, 249
TfiI	GAWTC	4 cut(s)	58, 329, 387, 1022
Tru1I	TTAA	6 cut(s)	573, 588, 618, 642, 870, 1291
Tru9I	TTAA	6 cut(s)	573, 588, 618, 642, 870, 1291
TscAI	CASTG	1 cut(s)	1119
TseI	GCWGC	2 cut(s)	845, 1064
TspDTI	ATGAA	2 cut(s)	179, 284
TspGWI	ACGGA	1 cut(s)	1189
TspRI	CASTG	1 cut(s)	1119
Van91I	CCANNNNNTGG	1 cut(s)	1240
XagI	CCTNNNNNAGG	2 cut(s)	437, 732
XapI	RAATTY	1 cut(s)	1248
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	2 cut(s)	423, 1288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	564
XhoI	CTCGAG	2 cut(s)	30, 362
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	3 cut(s)	48, 275, 1052
Zsp2I	ATGCAT	2 cut(s)	1011, 1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.