Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Reverse (-)

23320594 .. 23327102

Gene Structure 6509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATTCTGATCTCTCCGTTATCCTCCCTCGCGTCCTCATCGTCTCTCGACGTACCCTTCGCAAGAACAAGTTCGTAGATTTTGTGGTATTCGTGCCCCGAGTGAATGGGGTGCACATGTTATTGGATAGCTTCGAGCCCATCCATGGAGTCCTCCTCTGCGAAGGAGAAGACATCGACCCGTCTCTCTATGAGTCAGAGGTTGACGTCTCAGGTCTTTCACCCGAAGAGTTGGAAGAAATCAGGAAGCTCCATGCAAGCGACACAGCCATCGACAAAGAAAAAGACTCGATCGAACTGAGGCTGGCGAAGCTCTGCCTCGAACGGAACGTACCCTACTTGGGAATATGCAGAGGCTCAGAGGTCTTGAACGTAGCATGTGGAGGAACCTTTTACCAAGACATCGAGAGAGAGCTCTCGAAAAAGCTCAGCAAATTCGATGATAAAAAAAATGGTGTGTATGTGCAGCATATAAATTATGAAGACTACGATGGGCATAGGCATGTGGTGAATGTAGTGGAGAAGACTCCTTTGCACCATTGGTTTAACAAGTCTATGGAATCAGGAGAAGGGAAGATGCAGATTAGGGTTAAGAGCTATCACCATCAACGTGTTAAGAAATTGGCACAGAGATTTGTGCCAATGGCATTTGCACCAGATGGTTTGATTGAAGGGTTTTACGATCCAGATGCTTATAATCCTGAGGAAGGTAATTTATCATGGGATTACAGTTTCATCCAGAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

250

Amino Acids

28.7

Weight (kDa)

5.52

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AatII	GACGTC	1 cut(s)	210
AccII	CGCG	1 cut(s)	33
AclWI	GGATC	1 cut(s)	677
AcsI	RAATTY	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	55, 333
AfiI	CCNNNNNNNGG	3 cut(s)	146, 341, 707
AflIII	ACRYGT	2 cut(s)	117, 610
AgsI	TTSAA	2 cut(s)	370, 671
AluBI	AGCT	6 cut(s)	132, 250, 313, 415, 427, 597
AluI	AGCT	6 cut(s)	132, 250, 313, 415, 427, 597
Alw21I	GWGCWC	2 cut(s)	117, 417
Alw26I	GTCTC	3 cut(s)	49, 189, 214
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	677
Ama87I	CYCGRG	1 cut(s)	99
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp700I	GAANNNNTTC	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	213, 520, 593
AvaI	CYCGRG	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	702
BaeGI	GKGCMC	2 cut(s)	99, 117
BanII	GRGCYC	2 cut(s)	141, 417
BbsI	GAAGAC	3 cut(s)	177, 489, 530
Bbv12I	GWGCWC	2 cut(s)	117, 417
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	5 cut(s)	149, 278, 485, 612, 653
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BcoDI	GTCTC	3 cut(s)	49, 189, 214
BisI	GCNGC	1 cut(s)	467
BlpI	GCTNAGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	388
BmsI	GCATC	2 cut(s)	567, 679
BpiI	GAAGAC	3 cut(s)	177, 489, 530
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
Bpu1102I	GCTNAGC	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 341, 707
Bse21I	CCTNAGG	1 cut(s)	702
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	141, 735
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	146, 341, 707
BseMII	CTCAG	5 cut(s)	225, 290, 372, 442, 693
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	2 cut(s)	99, 117
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	117, 417
BsiHKCI	CYCGRG	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	146, 341, 707
BsmAI	GTCTC	3 cut(s)	49, 189, 214
BsmBI	CGTCTC	3 cut(s)	49, 189, 214
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	4 cut(s)	99, 117, 141, 417
Bsp143I	GATC	3 cut(s)	10, 291, 682
Bsp1720I	GCTNAGC	1 cut(s)	428
Bsp19I	CCATGG	1 cut(s)	145
BspCNI	CTCAG	5 cut(s)	224, 291, 371, 441, 694
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	677
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	10, 291, 682
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	731
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	259, 306
BstDEI	CTNAG	5 cut(s)	211, 299, 358, 428, 702
BstDSI	CCRYGG	1 cut(s)	145
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstF5I	GGATG	2 cut(s)	141, 735
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	3 cut(s)	13, 294, 685
BstMAI	GTCTC	3 cut(s)	49, 189, 214
BstMBI	GATC	3 cut(s)	10, 291, 682
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNSI	RCATGY	3 cut(s)	121, 381, 506
BstSLI	GKGCMC	2 cut(s)	99, 117
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	3 cut(s)	177, 489, 530
Bsu36I	CCTNAGG	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	141, 735
Cac8I	GCNNGC	2 cut(s)	259, 306
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	54, 332
CviAII	CATG	6 cut(s)	118, 146, 254, 378, 503, 720
CviQI	GTAC	2 cut(s)	54, 332
DdeI	CTNAG	5 cut(s)	211, 299, 358, 428, 702
DpnI	GATC	3 cut(s)	12, 293, 684
DpnII	GATC	3 cut(s)	10, 291, 682
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	145
Eco24I	GRGCYC	2 cut(s)	141, 417
Eco53kI	GAGCTC	1 cut(s)	415
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoT14I	CCWWGG	1 cut(s)	145
EcoT38I	GRGCYC	2 cut(s)	141, 417
ErhI	CCWWGG	1 cut(s)	145
Esp3I	CGTCTC	3 cut(s)	49, 189, 214
FaeI	CATG	6 cut(s)	121, 149, 257, 381, 506, 723
FatI	CATG	6 cut(s)	117, 145, 253, 377, 502, 719
Fnu4HI	GCNGC	1 cut(s)	467
FokI	GGATG	2 cut(s)	128, 722
FriOI	GRGCYC	2 cut(s)	141, 417
Fsp4HI	GCNGC	1 cut(s)	467
GluI	GCNGC	1 cut(s)	467
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	121, 149, 257, 381, 506, 723
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	6 cut(s)	5, 150, 194, 287, 526, 560
HphI	GGTGA	3 cut(s)	213, 520, 593
Hpy166II	GTNNAC	2 cut(s)	115, 205
Hpy188I	TCNGA	3 cut(s)	10, 199, 361
Hpy188III	TCNNGA	9 cut(s)	48, 244, 367, 406, 418, 564, 686, 701, 739
Hpy8I	GTNNAC	2 cut(s)	115, 205
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	5 cut(s)	68, 158, 563, 665, 701
HpyCH4III	ACNGT	1 cut(s)	731
HpyCH4IV	ACGT	5 cut(s)	52, 207, 330, 372, 610
HpyCH4V	TGCA	7 cut(s)	115, 257, 351, 466, 535, 580, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	5 cut(s)	211, 299, 358, 428, 702
HpySE526I	ACGT	5 cut(s)	52, 207, 330, 372, 610
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	121, 149, 257, 381, 506, 723
Kzo9I	GATC	3 cut(s)	10, 291, 682
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	7 cut(s)	198, 229, 290, 549, 669, 699, 714
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	567, 679
MaeII	ACGT	5 cut(s)	52, 207, 330, 372, 610
MalI	GATC	3 cut(s)	12, 293, 684
MboI	GATC	3 cut(s)	10, 291, 682
MboII	GAAGA	6 cut(s)	182, 239, 248, 494, 535, 586
MhlI	GDGCHC	4 cut(s)	99, 117, 141, 417
MluCI	AATT	4 cut(s)	434, 475, 620, 712
MlyI	GAGTC	4 cut(s)	159, 203, 281, 520
MmeI	TCCRAC	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	546, 591, 615
MslI	CAYNNNNRTG	2 cut(s)	501, 609
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	310
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	3 cut(s)	10, 291, 682
NlaIII	CATG	6 cut(s)	121, 149, 257, 381, 506, 723
NlaIV	GGNNCC	1 cut(s)	388
NspI	RCATGY	3 cut(s)	121, 381, 506
PciI	ACATGT	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	5, 560
PkrI	GCNGC	1 cut(s)	468
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	4 cut(s)	158, 202, 281, 520
PpsI	GAGTC	4 cut(s)	158, 202, 281, 520
PscI	ACATGT	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	388
PsrI	GAACNNNNNNTAC	4 cut(s)	315, 320, 347, 352
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	2 cut(s)	55, 333
RsaNI	GTAC	2 cut(s)	54, 332
RseI	CAYNNNNRTG	2 cut(s)	501, 609
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	546, 591, 615
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	3 cut(s)	10, 291, 682
SchI	GAGTC	4 cut(s)	159, 203, 281, 520
SduI	GDGCHC	4 cut(s)	99, 117, 141, 417
SfaNI	GCATC	2 cut(s)	567, 679
SmiMI	CAYNNNNRTG	2 cut(s)	501, 609
Sse9I	AATT	4 cut(s)	434, 475, 620, 712
SstI	GAGCTC	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	731
TaiI	ACGT	5 cut(s)	55, 210, 333, 375, 613
TasI	AATT	4 cut(s)	434, 475, 620, 712
TfiI	GAWTC	2 cut(s)	5, 560
Tru1I	TTAA	3 cut(s)	546, 591, 615
Tru9I	TTAA	3 cut(s)	546, 591, 615
TseI	GCWGC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	495, 724
TspGWI	ACGGA	2 cut(s)	7, 340
VneI	GTGCAC	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	705
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	3 cut(s)	121, 381, 506
XmnI	GAANNNNTTC	1 cut(s)	71
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.