RchiOBHm_Chr4g0434461

Peptidase C26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002132
Physical Location & Seq
Forward (+)
58225800 .. 58226027
228 bp
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UTR
Exon/CDS
Intron
PRQ40291

Sequence Viewer

Length: 195 bp
ATGGGGGCAACGGTGAGAAATGCTTCGGCGTACATGGAGCAATTGAAGATGGGTGAGGAGAGGGAGAGAGTTGCAAGGGCCATCATTGGGAAAATGTCCATTGAGCAGATATCTGAATTGATGTCATTCTACCGCATCATGACTCAGATATGTTCCGACTCTTTAGAGAAGAAGACAACTGACCCAGCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0022603 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065007 GO:1900618 GO:1905428 GO:2000026 GO:2000032
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C26

Protein Analysis

64

Amino Acids

7.23

Weight (kDa)

6.2

Isoelectric Point (pI)

65.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 133
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 46
AoxI GGCC 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 25, 65
BbsI GAAGAC 1 cut(s) 179
BccI CCATC 2 cut(s) 43, 89
BmgT120I GGNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 87
BsnI GGCC 1 cut(s) 80
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 80
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 34, 139
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 144
Eco32I GATATC 1 cut(s) 111
EcoRV GATATC 1 cut(s) 111
FaeI CATG 2 cut(s) 37, 142
FaiI YATR 3 cut(s) 35, 140, 151
FatI CATG 2 cut(s) 33, 138
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 2 cut(s) 37, 142
HinfI GANTC 2 cut(s) 142, 158
HphI GGTGA 2 cut(s) 25, 65
Hpy188I TCNGA 3 cut(s) 115, 147, 157
Hpy188III TCNNGA 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 2 cut(s) 37, 142
LmnI GCTCC 1 cut(s) 37
LweI GCATC 1 cut(s) 144
MboII GAAGA 3 cut(s) 58, 181, 184
MfeI CAATTG 1 cut(s) 41
MluCI AATT 2 cut(s) 41, 116
MlyI GAGTC 2 cut(s) 136, 152
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 2 cut(s) 49, 54
MroXI GAANNNNTTC 1 cut(s) 22
MunI CAATTG 1 cut(s) 41
NlaIII CATG 2 cut(s) 37, 142
PagI TCATGA 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 22
PleI GAGTC 2 cut(s) 136, 152
PpsI GAGTC 2 cut(s) 136, 152
PspFI CCCAGC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 2 cut(s) 136, 152
SfaNI GCATC 1 cut(s) 144
SgeI CNNG 3 cut(s) 46, 87, 151
Sse9I AATT 2 cut(s) 41, 116
SsiI CCGC 1 cut(s) 133
TaaI ACNGT 1 cut(s) 13
TasI AATT 2 cut(s) 41, 116
XmnI GAANNNNTTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.