Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Reverse (-)

16896199 .. 16898270

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG177300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTATTCTGATCTGTCTGTGATCCTTCCTCGCGTTCTCATCGTCTCTAGACGTACGGTTCGCAAGAACAAGTTCGTAGATTTTGTGGGTGAATATCATCTCGATCTTATAATAAGGTATGGTGCAGTACCAGTAATTGTTCCCCGAGTAAATGGGGTGCATATGTTATTGGAGAGCTTCGAGCCGATTCATGGAGTTTTGCTTTGTGAAGGAGAGGATATTGATCCCTCTCTTTACCAAAGCGGCGGCGACGACGGCATTTCCAAGGAAGAACTGGAAGAAATCAGGAGGCTTCATGTAAGCGACACGACCATCGATAAGGAGAAAGATTCAATCGAGCTGAGGCTGGCCAAGCTTTGCCTCGAGAGGAACATACCCTACTTGGGAATATGCAGAGGCTCACAAGTCTTAAATGTTGCATGTGGAGGTACCCTTTACCAGGATATAGAAACCGAGCTCTCTAAGAACTCCAAGATCGATGAGAATAAGGTTCAACATATGAATTACGACGACTACGACGGACATAGACATGAGGTTGAGGTGGTTGACGATACTCCTTTGCACCATTGGTTTAAGGAGGAACATATTAACGAGAGAGGCAAGTTGGAGATTCGGGTTAATAGTTATCACCATCAAGGTGTTAAGAGATTGGCACACCGTTTTCTGCCAATGGCTTTTGCAAGAGATGGTTTGATCGAAGCCTTCTATGATCCGGATGCTTATAATCCCGACCAAGGTAAGTTTATTATGGGACTCCAATTCCATCCCGAAAGAATGAGAATGCCCGATTCTGACCAATTTGATTACCCTGGTTGCCCATCTGCCTATAAGGAATTTGTCAAAGCAGCAGTGGCTTACCAGAAGAAGCTTAATAGCTTAAGCTCCTCATCATCAGTACCGTCACAGTTGCCTTTCAAGCTTGACAGCGCAGTGGAGATAAAGAGAGACAGGATAGTAAGGAGTTTCTCAATTGCCAGACACTTATATACTACTGGTCGTAGTATGATGCATTCAATCAAAGAATCAGAACTCGAAGCCGGGGCAGAATTCCTTGAGGTTTTAATTGCTTCAATTCGTTTTACTCATTGTTATTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

366

Amino Acids

42.01

Weight (kDa)

5.87

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	27 - 257	4.2e-42	Peptidase C26
GATase	PF00117	111 - 262	2.3e-11	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	110, 723
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccII	CGCG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	2 cut(s)	243, 246
AclWI	GGATC	3 cut(s)	16, 218, 704
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	833, 1046
AfaI	GTAC	4 cut(s)	55, 129, 430, 897
AfiI	CCNNNNNNNGG	4 cut(s)	191, 383, 439, 734
AflII	CTTAAG	1 cut(s)	877
AgsI	TTSAA	5 cut(s)	333, 494, 916, 1014, 1071
AjnI	CCWGG	2 cut(s)	438, 808
AluBI	AGCT	8 cut(s)	177, 340, 355, 457, 868, 876, 882, 919
AluI	AGCT	8 cut(s)	177, 340, 355, 457, 868, 876, 882, 919
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	49, 939
AlwI	GGATC	3 cut(s)	16, 218, 704
Ama87I	CYCGRG	2 cut(s)	144, 362
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	2 cut(s)	833, 1046
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	929
AsuC2I	CCSGG	1 cut(s)	1039
AsuHPI	GGTGA	2 cut(s)	101, 620
AvaI	CYCGRG	2 cut(s)	144, 362
BalI	TGGCCA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	857
BccI	CCATC	5 cut(s)	320, 639, 680, 771, 826
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	440, 810
BcnI	CCSGG	1 cut(s)	1039
BcoDI	GTCTC	2 cut(s)	49, 939
BfaI	CTAG	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	877
BisI	GCNGC	3 cut(s)	244, 247, 846
BlsI	GCNGC	3 cut(s)	245, 248, 847
Bme1390I	CCNGG	3 cut(s)	440, 810, 1039
BmeT110I	CYCGRG	2 cut(s)	144, 362
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	3 cut(s)	440, 810, 1039
BmsI	GCATC	2 cut(s)	706, 996
Bpu10I	CCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	1073
BpuMI	CCSGG	1 cut(s)	1039
Bsa29I	ATCGAT	2 cut(s)	315, 477
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	264, 733, 808, 1038
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 383, 439, 734
Bse1I	ACTGG	3 cut(s)	131, 279, 997
Bse8I	GATNNNNATC	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	2 cut(s)	440, 810
BseCI	ATCGAT	2 cut(s)	315, 477
BseDI	CCNNGG	4 cut(s)	264, 733, 808, 1038
BseGI	GGATG	2 cut(s)	721, 763
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	4 cut(s)	191, 383, 439, 734
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	3 cut(s)	131, 279, 997
BseRI	GAGGAG	1 cut(s)	874
BseXI	GCAGC	1 cut(s)	857
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	428
BshVI	ATCGAT	2 cut(s)	315, 477
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	144, 362
BsiSI	CCGG	2 cut(s)	713, 1038
BsiWI	CGTACG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	4 cut(s)	191, 383, 439, 734
BsmAI	GTCTC	2 cut(s)	49, 939
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	765
BsmI	GAATGC	2 cut(s)	786, 1009
BsnI	GGCC	1 cut(s)	350
BsoBI	CYCGRG	2 cut(s)	144, 362
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp13I	TCCGGA	1 cut(s)	712
Bsp143I	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
BspACI	CCGC	2 cut(s)	243, 246
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	333
BspDI	ATCGAT	2 cut(s)	315, 477
BspEI	TCCGGA	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	3 cut(s)	16, 218, 704
BspT107I	GGYRCC	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	877
BsrI	ACTGG	3 cut(s)	131, 279, 997
BssECI	CCNNGG	4 cut(s)	264, 733, 808, 1038
BssMI	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
BssT1I	CCWWGG	2 cut(s)	264, 733
Bst2UI	CCWGG	2 cut(s)	440, 810
Bst4CI	ACNGT	4 cut(s)	58, 659, 900, 906
BstAFI	CTTAAG	1 cut(s)	877
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	341, 462
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	721, 763
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	929
BstKTI	GATC	7 cut(s)	13, 24, 106, 226, 477, 696, 712
BstMAI	GTCTC	2 cut(s)	49, 939
BstMBI	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 352, 851, 916
BstNI	CCWGG	2 cut(s)	440, 810
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	3 cut(s)	438, 808, 1037
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	857
Bsu15I	ATCGAT	2 cut(s)	315, 477
BsuRI	GGCC	1 cut(s)	350
BsuTUI	ATCGAT	2 cut(s)	315, 477
BtsCI	GGATG	2 cut(s)	721, 763
BtsI	GCAGTG	2 cut(s)	855, 936
BtsIMutI	CAGTG	2 cut(s)	855, 936
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	929
ClaI	ATCGAT	2 cut(s)	315, 477
Csp6I	GTAC	4 cut(s)	54, 128, 429, 896
CviAII	CATG	4 cut(s)	191, 296, 420, 530
CviQI	GTAC	4 cut(s)	54, 128, 429, 896
DdeI	CTNAG	2 cut(s)	341, 462
DpnI	GATC	7 cut(s)	12, 23, 105, 225, 476, 695, 711
DpnII	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
EaeI	YGGCCR	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	2 cut(s)	264, 733
Eco24I	GRGCYC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	457
Eco88I	CYCGRG	2 cut(s)	144, 362
EcoICRI	GAGCTC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	1046
EcoRII	CCWGG	2 cut(s)	438, 808
EcoT14I	CCWWGG	2 cut(s)	264, 733
EcoT22I	ATGCAT	1 cut(s)	1011
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	2 cut(s)	264, 733
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	4 cut(s)	194, 299, 423, 533
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	4 cut(s)	190, 295, 419, 529
FauNDI	CATATG	2 cut(s)	162, 498
Fnu4HI	GCNGC	3 cut(s)	244, 247, 846
FokI	GGATG	2 cut(s)	728, 750
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	3 cut(s)	244, 247, 846
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	928
GluI	GCNGC	3 cut(s)	244, 247, 846
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	2 cut(s)	713, 1038
HhaI	GCGC	1 cut(s)	929
Hin1II	CATG	4 cut(s)	194, 299, 423, 533
Hin6I	GCGC	1 cut(s)	927
HinP1I	GCGC	1 cut(s)	927
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	3 cut(s)	353, 866, 917
HinfI	GANTC	6 cut(s)	187, 329, 610, 753, 788, 1022
HpaII	CCGG	2 cut(s)	713, 1038
HphI	GGTGA	2 cut(s)	101, 620
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	3 cut(s)	10, 793, 1027
Hpy188III	TCNNGA	8 cut(s)	48, 101, 286, 364, 713, 728, 767, 1098
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	4 cut(s)	254, 257, 512, 521
HpyAV	CCTTC	3 cut(s)	35, 203, 712
HpyCH4III	ACNGT	4 cut(s)	58, 659, 900, 906
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	7 cut(s)	125, 160, 393, 419, 562, 680, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 352, 851, 916
HpyF3I	CTNAG	2 cut(s)	341, 462
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	194, 299, 423, 533
HspAI	GCGC	1 cut(s)	927
Kpn2I	TCCGGA	1 cut(s)	712
KpnI	GGTACC	1 cut(s)	432
Kzo9I	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
LmnI	GCTCC	1 cut(s)	887
Lsp1109I	GCAGC	1 cut(s)	857
LweI	GCATC	2 cut(s)	706, 996
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	900
MalI	GATC	7 cut(s)	12, 23, 105, 225, 476, 695, 711
MboI	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
MboII	GAAGA	3 cut(s)	281, 290, 874
MfeI	CAATTG	1 cut(s)	969
MhlI	GDGCHC	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	9 cut(s)	135, 502, 758, 797, 833, 969, 1046, 1062, 1071
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	1 cut(s)	585
Mox20I	TGGCCA	1 cut(s)	350
Mph1103I	ATGCAT	1 cut(s)	1011
MroI	TCCGGA	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	8 cut(s)	410, 573, 588, 618, 642, 870, 878, 1061
MslI	CAYNNNNRTG	2 cut(s)	528, 636
Msp20I	TGGCCA	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	877
MspI	CCGG	2 cut(s)	713, 1038
MspR9I	CCNGG	3 cut(s)	440, 810, 1039
MunI	CAATTG	1 cut(s)	969
Mva1269I	GAATGC	2 cut(s)	786, 1009
MvaI	CCWGG	2 cut(s)	440, 810
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	255, 352, 851, 916
NciI	CCSGG	1 cut(s)	1039
NdeI	CATATG	2 cut(s)	162, 498
NdeII	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
NlaIII	CATG	4 cut(s)	194, 299, 423, 533
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	900
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PctI	GAATGC	2 cut(s)	786, 1009
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	5 cut(s)	187, 329, 610, 788, 1022
Pfl23II	CGTACG	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	245, 248, 847
PleI	GAGTC	1 cut(s)	747
PpsI	GAGTC	1 cut(s)	747
PsiI	TTATAA	2 cut(s)	110, 723
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	438, 808
PspGI	CCWGG	2 cut(s)	438, 808
PspLI	CGTACG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	362, 394
RsaI	GTAC	4 cut(s)	55, 129, 430, 897
RsaNI	GTAC	4 cut(s)	54, 128, 429, 896
RseI	CAYNNNNRTG	2 cut(s)	528, 636
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	8 cut(s)	410, 573, 588, 618, 642, 870, 878, 1061
SatI	GCNGC	3 cut(s)	244, 247, 846
Sau3AI	GATC	7 cut(s)	10, 21, 103, 223, 474, 693, 709
SchI	GAGTC	1 cut(s)	747
ScrFI	CCNGG	3 cut(s)	440, 810, 1039
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	706, 996
Sfr274I	CTCGAG	1 cut(s)	362
SlaI	CTCGAG	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	528, 636
SmlI	CTYRAG	3 cut(s)	362, 877, 1052
SmoI	CTYRAG	3 cut(s)	362, 877, 1052
Sse9I	AATT	9 cut(s)	135, 502, 758, 797, 833, 969, 1046, 1062, 1071
SsiI	CCGC	2 cut(s)	243, 246
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	438, 808, 1037
StyI	CCWWGG	2 cut(s)	264, 733
TaaI	ACNGT	4 cut(s)	58, 659, 900, 906
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	8 cut(s)	102, 180, 315, 336, 363, 477, 696, 1032
TasI	AATT	9 cut(s)	135, 502, 758, 797, 833, 969, 1046, 1062, 1071
TauI	GCSGC	2 cut(s)	246, 249
TfiI	GAWTC	5 cut(s)	187, 329, 610, 788, 1022
Tru1I	TTAA	8 cut(s)	410, 573, 588, 618, 642, 870, 878, 1061
Tru9I	TTAA	8 cut(s)	410, 573, 588, 618, 642, 870, 878, 1061
TscAI	CASTG	2 cut(s)	855, 936
TseFI	GTSAC	1 cut(s)	900
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	1 cut(s)	900
TspDTI	ATGAA	3 cut(s)	179, 284, 515
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	855, 936
Vha464I	CTTAAG	1 cut(s)	877
XagI	CCTNNNNNAGG	1 cut(s)	437
XapI	RAATTY	2 cut(s)	833, 1046
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	1 cut(s)	423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.