Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Reverse (-)

17542670 .. 17544641

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGATTTTGATCTCTCTGTCATCCTCCCTCGCGTCCTCATCGTCTCTCGACGTACCCTTCGCAAGAACAAGTTCGTAGATTTTGTGGGTGAATACCATCTTGATCTTATAGTAGGTTATGGAGCAGTACCAGTAATCGTGCCCCGAGTAAATGGGGTGCACATGTTATTGGACAGCTTCGAGCCCATCCATGGAGTTCTCCTCTGCGAAGGAGAAGACATCGACCCGTCTCTCTACGAAACTGAGGTCGACGTCTCAGGCCTTTCATCTGAAGAGTTGGAGGAAATCAGGAGGCTCCATGCAAGCGACACAGCCATCGACAAAGAAAAAGACTCGATCGAATTGAGGCTGGCGAAGCTCTGCCTGGAACGGAACATACCCTACTTGGGAATATGCAGAGGTTCACAGGTCTTGAATGTCGCATGTGGAGGAACCCTTTACCAAGACATCGAGAGAGAGCTCTCGAAAAAGCACTTGGAATTTGATGATCGAAAAAATGGTGTTTATGTGCAACATATAAATTATGAAGACTATGATGGGCATAGGCATGTGGTGAAGGTGGTGGAGGAGACTCCTTTGCACCATTGGTTTAAGGAGTCTTTGGAATCAGGGGAACAGAAGATGGAGATTAGGGTTAATAGCTATCACCATCAAGGCGTTAAGAAATTAGCACAGAGATTTGTGCCAATGGCATTTGCACCAGATGGTTTGATTGAAGGGTTTTATGATCCAGATGCTTATAATCCCGAGGAAGGTAAATTTATCATGGGATTACAATTTCATCCAGAGAGAATGAGGAGACCAGATTCTGATGAGTTTGATTACCCTGGTTGCCCATCTGCTTATCAGGAATTTGTGAAGGCAGCAATTGCTTACAAGAACAAGCTTAACAGTTCAGCTTCAGTGCCACAATCTTTGAAGCTGGATGGGGAAATGGAGAAAAGGAGAAAGAAAATTGTTAGAAGTTTCTCAATTGCAAGAAACATATACACAGGAGGCCTAGGAAGTGGTATGCATCAAATCAAAGAATCTGAACTTGAAGCTGGAGCAGAATTCCTTGAGTCCAACACAGCACTGAGCATACAGCAGGAGAACAGACTGAAGCAAATGGGGGCAACAGTGAGAAATGCAGGCTCCTACAAACAGAGATTGAAGTTGAATGAGGAGAGAGAAAGACTGGCAAGGGATGTGATGGGGAAAATGTCAGTGGAGCAGTTGTCTGATCTGCTGGCCTTCTACCATATGATGGGCAAAATCTGTTCAGAAGTGGTGGAAAGAAAGCTGAATGGGATTGTCAATGATATTGGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

438

Amino Acids

49.83

Weight (kDa)

5.75

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AatII	GACGTC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	1246
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	33
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	4 cut(s)	479, 758, 851, 1052
AcuI	CTGAAG	3 cut(s)	291, 885, 1121
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	55, 129
AfiI	CCNNNNNNNGG	4 cut(s)	191, 386, 752, 1246
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	6 cut(s)	415, 716, 919, 1040, 1153, 1159
AjnI	CCWGG	2 cut(s)	363, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	9 cut(s)	177, 358, 460, 642, 886, 899, 922, 1043, 1282
AluI	AGCT	9 cut(s)	177, 358, 460, 642, 886, 899, 922, 1043, 1282
Alw21I	GWGCWC	2 cut(s)	162, 462
Alw26I	GTCTC	5 cut(s)	49, 234, 259, 563, 793
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	722
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	2 cut(s)	144, 746
AoxI	GGCC	3 cut(s)	259, 997, 1230
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	863
ApoI	RAATTY	4 cut(s)	479, 758, 851, 1052
ArsI	GACNNNNNNTTYG	4 cut(s)	42, 74, 231, 263
Asp700I	GAANNNNTTC	1 cut(s)	71
AspA2I	CCTAGG	1 cut(s)	1000
AsuHPI	GGTGA	3 cut(s)	101, 565, 638
AvaI	CYCGRG	2 cut(s)	144, 746
AvrII	CCTAGG	1 cut(s)	1000
BaeGI	GKGCMC	2 cut(s)	144, 162
BanII	GRGCYC	2 cut(s)	186, 462
BbsI	GAAGAC	2 cut(s)	222, 534
Bbv12I	GWGCWC	2 cut(s)	162, 462
BbvI	GCAGC	1 cut(s)	875
BciT130I	CCWGG	2 cut(s)	365, 828
BcoDI	GTCTC	5 cut(s)	49, 234, 259, 563, 793
BfaI	CTAG	1 cut(s)	1001
BisI	GCNGC	1 cut(s)	864
BlnI	CCTAGG	1 cut(s)	1000
BlsI	GCNGC	1 cut(s)	865
Bme1390I	CCNGG	2 cut(s)	365, 828
BmeT110I	CYCGRG	2 cut(s)	144, 746
BmiI	GGNNCC	3 cut(s)	296, 433, 1135
BmrFI	CCNGG	2 cut(s)	365, 828
BmsI	GCATC	2 cut(s)	724, 1024
BpiI	GAAGAC	2 cut(s)	222, 534
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
BpmI	CTGGAG	1 cut(s)	1065
BpuEI	CTTGAG	1 cut(s)	1079
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	793
BsaJI	CCNNGG	4 cut(s)	190, 747, 826, 1000
BsaXI	ACNNNNNCTCC	2 cut(s)	1202, 1232
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 386, 752, 1246
Bse1I	ACTGG	2 cut(s)	131, 1182
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	365, 828
BseDI	CCNNGG	4 cut(s)	190, 747, 826, 1000
BseGI	GGATG	5 cut(s)	21, 186, 781, 931, 1192
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	4 cut(s)	191, 386, 752, 1246
BseMII	CTCAG	3 cut(s)	234, 270, 1067
BseNI	ACTGG	2 cut(s)	131, 1182
BseRI	GAGGAG	4 cut(s)	191, 581, 811, 1178
BseSI	GKGCMC	2 cut(s)	144, 162
BseXI	GCAGC	1 cut(s)	875
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	261, 999, 1232
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	162, 462
BsiHKCI	CYCGRG	2 cut(s)	144, 746
BslI	CCNNNNNNNGG	4 cut(s)	191, 386, 752, 1246
BsmAI	GTCTC	5 cut(s)	49, 234, 259, 563, 793
BsmBI	CGTCTC	3 cut(s)	49, 234, 259
BsnI	GGCC	3 cut(s)	261, 999, 1232
Bso31I	GGTCTC	1 cut(s)	793
BsoBI	CYCGRG	2 cut(s)	144, 746
Bsp1286I	GDGCHC	4 cut(s)	144, 162, 186, 462
Bsp143I	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
Bsp19I	CCATGG	1 cut(s)	190
BspANI	GGCC	3 cut(s)	261, 999, 1232
BspCNI	CTCAG	3 cut(s)	235, 269, 1068
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	296, 433, 1135
BspPI	GGATC	1 cut(s)	722
BspTNI	GGTCTC	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	131, 1182
BssECI	CCNNGG	4 cut(s)	190, 747, 826, 1000
BssMI	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	190, 1000
Bst2UI	CCWGG	2 cut(s)	365, 828
Bst4CI	ACNGT	2 cut(s)	893, 1120
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	4 cut(s)	304, 351, 1132, 1230
BstDEI	CTNAG	3 cut(s)	243, 256, 1076
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	5 cut(s)	21, 186, 781, 931, 1192
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	6 cut(s)	13, 106, 339, 490, 730, 1225
BstMAI	GTCTC	5 cut(s)	49, 234, 259, 563, 793
BstMBI	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 869
BstNI	CCWGG	2 cut(s)	365, 828
BstNSI	RCATGY	3 cut(s)	166, 426, 551
BstSCI	CCNGG	2 cut(s)	363, 826
BstSLI	GKGCMC	2 cut(s)	144, 162
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	875
BstV2I	GAAGAC	2 cut(s)	222, 534
BsuRI	GGCC	3 cut(s)	261, 999, 1232
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	5 cut(s)	21, 186, 781, 931, 1192
BtsIMutI	CAGTG	4 cut(s)	909, 1073, 1125, 1212
Cac8I	GCNNGC	4 cut(s)	304, 351, 1132, 1230
CaiI	CAGNNNCTG	1 cut(s)	809
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	54, 128
CspCI	CAANNNNNGTGG	2 cut(s)	897, 932
CviAII	CATG	6 cut(s)	163, 191, 299, 423, 548, 766
CviQI	GTAC	2 cut(s)	54, 128
DdeI	CTNAG	3 cut(s)	243, 256, 1076
DpnI	GATC	6 cut(s)	12, 105, 338, 489, 729, 1224
DpnII	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	190, 1000
Eco147I	AGGCCT	2 cut(s)	261, 999
Eco24I	GRGCYC	2 cut(s)	186, 462
Eco31I	GGTCTC	1 cut(s)	793
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	3 cut(s)	291, 885, 1121
Eco88I	CYCGRG	2 cut(s)	144, 746
EcoICRI	GAGCTC	1 cut(s)	460
EcoRI	GAATTC	1 cut(s)	1052
EcoRII	CCWGG	2 cut(s)	363, 826
EcoT14I	CCWWGG	2 cut(s)	190, 1000
EcoT22I	ATGCAT	1 cut(s)	1017
EcoT38I	GRGCYC	2 cut(s)	186, 462
ErhI	CCWWGG	2 cut(s)	190, 1000
Esp3I	CGTCTC	3 cut(s)	49, 234, 259
FaeI	CATG	6 cut(s)	166, 194, 302, 426, 551, 769
FatI	CATG	6 cut(s)	162, 190, 298, 422, 547, 765
FauNDI	CATATG	1 cut(s)	1242
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	864
FokI	GGATG	5 cut(s)	8, 173, 768, 938, 1199
FriOI	GRGCYC	2 cut(s)	186, 462
Fsp4HI	GCNGC	1 cut(s)	864
FspBI	CTAG	1 cut(s)	1001
GluI	GCNGC	1 cut(s)	864
GsuI	CTGGAG	1 cut(s)	1065
HaeIII	GGCC	3 cut(s)	261, 999, 1232
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	6 cut(s)	166, 194, 302, 426, 551, 769
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	7 cut(s)	332, 571, 596, 605, 806, 1028, 1061
HphI	GGTGA	3 cut(s)	101, 565, 638
Hpy166II	GTNNAC	3 cut(s)	160, 250, 404
Hpy188I	TCNGA	5 cut(s)	271, 811, 1033, 1222, 1264
Hpy8I	GTNNAC	3 cut(s)	160, 250, 404
Hpy99I	CGWCG	2 cut(s)	54, 254
HpyAV	CCTTC	7 cut(s)	68, 203, 550, 710, 746, 853, 1243
HpyCH4III	ACNGT	2 cut(s)	893, 1120
HpyCH4IV	ACGT	2 cut(s)	52, 252
HpyCH4V	TGCA	9 cut(s)	160, 302, 396, 511, 580, 698, 977, 1015, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 869
HpyF3I	CTNAG	3 cut(s)	243, 256, 1076
HpySE526I	ACGT	2 cut(s)	52, 252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	6 cut(s)	166, 194, 302, 426, 551, 769
Kzo9I	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
LmnI	GCTCC	5 cut(s)	122, 300, 1046, 1139, 1210
Lsp1109I	GCAGC	1 cut(s)	875
LweI	GCATC	2 cut(s)	724, 1024
MaeI	CTAG	1 cut(s)	1001
MaeII	ACGT	2 cut(s)	52, 252
MalI	GATC	6 cut(s)	12, 105, 338, 489, 729, 1224
MboI	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
MboII	GAAGA	4 cut(s)	227, 284, 539, 631
MfeI	CAATTG	2 cut(s)	867, 972
MhlI	GDGCHC	4 cut(s)	144, 162, 186, 462
MlyI	GAGTC	4 cut(s)	326, 565, 605, 1070
MmeI	TCCRAC	2 cut(s)	258, 1089
Mph1103I	ATGCAT	1 cut(s)	1017
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	4 cut(s)	591, 636, 660, 888
MslI	CAYNNNNRTG	1 cut(s)	546
MspR9I	CCNGG	2 cut(s)	365, 828
MunI	CAATTG	2 cut(s)	867, 972
MvaI	CCWGG	2 cut(s)	365, 828
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	355, 869
NcoI	CCATGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	1242
NdeII	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
NlaIII	CATG	6 cut(s)	166, 194, 302, 426, 551, 769
NlaIV	GGNNCC	3 cut(s)	296, 433, 1135
NsiI	ATGCAT	1 cut(s)	1017
NspI	RCATGY	3 cut(s)	166, 426, 551
PceI	AGGCCT	2 cut(s)	261, 999
PciI	ACATGT	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	605, 806, 1028
PflMI	CCANNNNNTGG	1 cut(s)	1246
PkrI	GCNGC	1 cut(s)	865
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	4 cut(s)	326, 565, 604, 1069
PpsI	GAGTC	4 cut(s)	326, 565, 604, 1069
PscI	ACATGT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	363, 826
PspGI	CCWGG	2 cut(s)	363, 826
PspN4I	GGNNCC	3 cut(s)	296, 433, 1135
PsrI	GAACNNNNNNTAC	4 cut(s)	360, 365, 392, 397
PstNI	CAGNNNCTG	1 cut(s)	809
PvuI	CGATCG	1 cut(s)	339
RsaI	GTAC	2 cut(s)	55, 129
RsaNI	GTAC	2 cut(s)	54, 128
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	462
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	4 cut(s)	591, 636, 660, 888
SatI	GCNGC	1 cut(s)	864
Sau3AI	GATC	6 cut(s)	10, 103, 336, 487, 727, 1222
SchI	GAGTC	4 cut(s)	326, 565, 605, 1070
ScrFI	CCNGG	2 cut(s)	365, 828
SduI	GDGCHC	4 cut(s)	144, 162, 186, 462
SfaNI	GCATC	2 cut(s)	724, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	1058
SmoI	CTYRAG	1 cut(s)	1058
SseBI	AGGCCT	2 cut(s)	261, 999
SspMI	CTAG	1 cut(s)	1001
SstI	GAGCTC	1 cut(s)	462
StuI	AGGCCT	2 cut(s)	261, 999
StyD4I	CCNGG	2 cut(s)	363, 826
StyI	CCWWGG	2 cut(s)	190, 1000
TaaI	ACNGT	2 cut(s)	893, 1120
TaiI	ACGT	2 cut(s)	55, 255
TfiI	GAWTC	3 cut(s)	605, 806, 1028
Tru1I	TTAA	4 cut(s)	591, 636, 660, 888
Tru9I	TTAA	4 cut(s)	591, 636, 660, 888
TscAI	CASTG	4 cut(s)	909, 1080, 1125, 1212
TseI	GCWGC	1 cut(s)	863
TspDTI	ATGAA	3 cut(s)	255, 540, 770
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	4 cut(s)	909, 1080, 1125, 1212
Van91I	CCANNNNNTGG	1 cut(s)	1246
VneI	GTGCAC	1 cut(s)	158
XapI	RAATTY	4 cut(s)	479, 758, 851, 1052
XceI	RCATGY	3 cut(s)	166, 426, 551
XmaJI	CCTAGG	1 cut(s)	1000
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	1001
ZraI	GACGTC	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.