Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Forward (+)

15256243 .. 15258814

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGAACAATAGATATGGATCCAAAGTTGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTATCTAGACGCACCGTTCGTAAAAACAAATTCGTCGATTTCGTTGGTGAATACCATCTTGATTTGATAGTACGTTACGGATGTGTACCAGTGATTGTACCAAGAGTAACGGGTGTTCACATGTTGCTTGAGAGTTTTAAACCAATACATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCTCTTTATGAATCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGAGATTAGAGAAACACATGCTAGTGATACAGCTATTGATAAAGAGAAAGATTCTATTGAGTTAGGTCTTGCTAAGCTTTGTCTTGAACAGAACATTCCTTACTTAGGAATCTGTAGAGGATCACAAATTTTGAATGTTGCTTGTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAGCTAACGAATAAGTTACCAGAAGAACGAAGAACGATGCATATCGATTATGATAATTATGATGGTCATAGACATGTTGTGAGGATTGTTGAGAACAGTCCACTTCATTCCTGGTTTAAAGATTCATTAGATGGTGAAAATATGGAGATTTTGGTTAATAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATTTGTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGATGCGTATAATCCTGAAGAAGGGAAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACAACATGATCTTGATGAGTTTGATTATCCTGGTTGTCCTGCTGCTTATCAGGAGTTTGCAAAGGCGGTGATTGCGTACCAGAAGAAGCTGAATAGCTCATTGTCTGTTCCAAAGACATTGAAGCTTGATAGTGAAATGGAGAATAAAAGAAAGATGCTTGTTAGGAGTTTCTCACTTGCTAAGTATATGTATGTTAGAGGAGCACCAGGGAAGAACCCATCAAAAGAATCAGAACTTGAAGTTGGAGCCGAGTTCCTTGAGTCGAACACGGCGCTAAGCGCAGAGCAAGAGATGAGGCTGAAGGAGATGGGAGCGACGGTGAGGAACGGAGGATCATATATGAAAAAGTTGAAAGTGGACGAGGATAAGCAGAGGATGGCGAGGAACATGATGAAAAAGATGAACATAGAGCAACTCTCAGAGCTTATGGCGTTTTATCATTTGATGGGTAATATATGTGGAGAGGTTTTGGACCGAAAGCTTCAAGGCAATGTCAATGAATGCTTGAGGGACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0022603 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065007 GO:1900618 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

436

Amino Acids

49.78

Weight (kDa)

5.57

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	35 - 261	2.5e-39	Peptidase C26
GATase	PF00117	121 - 263	3.1e-11	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	724
AciI	CCGC	1 cut(s)	857
AclWI	GGATC	6 cut(s)	14, 27, 242, 427, 716, 1132
AcsI	RAATTY	2 cut(s)	95, 426
AcuI	CTGAAG	3 cut(s)	309, 762, 1112
AfaI	GTAC	4 cut(s)	138, 153, 165, 869
AfiI	CCNNNNNNNGG	3 cut(s)	215, 404, 746
AflIII	ACRYGT	2 cut(s)	186, 547
AgsI	TTSAA	8 cut(s)	31, 299, 386, 433, 913, 1031, 1144, 1277
AjnI	CCWGG	3 cut(s)	584, 820, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	1017, 1049
AluBI	AGCT	9 cut(s)	295, 332, 376, 478, 880, 888, 916, 1216, 1273
AluI	AGCT	9 cut(s)	295, 332, 376, 478, 880, 888, 916, 1216, 1273
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	2 cut(s)	652, 784
AlwI	GGATC	6 cut(s)	14, 27, 242, 427, 716, 1132
Aor13HI	TCCGGA	1 cut(s)	724
ApeKI	GCWGC	2 cut(s)	692, 833
ApoI	RAATTY	2 cut(s)	95, 426
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	1066, 1073
AspS9I	GGNCC	2 cut(s)	1264, 1303
AsuHPI	GGTGA	5 cut(s)	125, 620, 632, 871, 1123
AvaII	GGWCC	2 cut(s)	1264, 1303
BamHI	GGATCC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	2 cut(s)	679, 820
BccI	CCATC	9 cut(s)	129, 530, 599, 651, 692, 1018, 1093, 1162, 1231
BceAI	ACGGC	1 cut(s)	1077
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	3 cut(s)	586, 822, 999
BcoDI	GTCTC	2 cut(s)	652, 784
BfaI	CTAG	3 cut(s)	72, 321, 461
BfmI	CTRYAG	1 cut(s)	412
BfoI	RGCGCY	1 cut(s)	1067
BisI	GCNGC	2 cut(s)	693, 834
BlpI	GCTNAGC	2 cut(s)	372, 1067
BlsI	GCNGC	2 cut(s)	694, 835
Bme1390I	CCNGG	3 cut(s)	586, 822, 999
Bme18I	GGWCC	2 cut(s)	1264, 1303
BmgT120I	GGNCC	2 cut(s)	1264, 1303
BmiI	GGNNCC	3 cut(s)	21, 1039, 1304
BmrFI	CCNGG	3 cut(s)	586, 822, 999
BmsI	GCATC	3 cut(s)	501, 718, 936
BplI	GAGNNNNNCTC	2 cut(s)	1193, 1225
Bpu1102I	GCTNAGC	2 cut(s)	372, 1067
BpuEI	CTTGAG	2 cut(s)	215, 1070
Bsa29I	ATCGAT	1 cut(s)	519
BsaBI	GATNNNNATC	3 cut(s)	18, 246, 515
BsaJI	CCNNGG	1 cut(s)	998
BsaWI	WCCGGW	1 cut(s)	724
BsaXI	ACNNNNNCTCC	2 cut(s)	1095, 1125
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 404, 746
Bse1I	ACTGG	2 cut(s)	155, 666
Bse3DI	GCAATG	1 cut(s)	1288
Bse8I	GATNNNNATC	3 cut(s)	18, 246, 515
BseAI	TCCGGA	1 cut(s)	724
BseBI	CCWGG	3 cut(s)	586, 822, 999
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	998
BseGI	GGATG	4 cut(s)	152, 733, 775, 1173
BseJI	GATNNNNATC	3 cut(s)	18, 246, 515
BseLI	CCNNNNNNNGG	3 cut(s)	215, 404, 746
BseMI	GCAATG	1 cut(s)	1288
BseMII	CTCAG	1 cut(s)	1224
BseNI	ACTGG	2 cut(s)	155, 666
BseRI	GAGGAG	1 cut(s)	1005
BseXI	GCAGC	2 cut(s)	679, 820
BshVI	ATCGAT	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	997
BsiSI	CCGG	1 cut(s)	725
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	3 cut(s)	215, 404, 746
BsmAI	GTCTC	2 cut(s)	652, 784
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	1298
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp13I	TCCGGA	1 cut(s)	724
Bsp143I	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
Bsp1720I	GCTNAGC	2 cut(s)	372, 1067
BspACI	CCGC	1 cut(s)	857
BspCNI	CTCAG	1 cut(s)	1223
BspDI	ATCGAT	1 cut(s)	519
BspEI	TCCGGA	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	21, 1039, 1304
BspPI	GGATC	6 cut(s)	14, 27, 242, 427, 716, 1132
BspQI	GCTCTTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	1288
BsrI	ACTGG	2 cut(s)	155, 666
BssECI	CCNNGG	1 cut(s)	998
BssMI	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
BssSI	CACGAG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	3 cut(s)	586, 822, 999
Bst4CI	ACNGT	4 cut(s)	82, 572, 771, 1111
Bst6I	CTCTTC	2 cut(s)	285, 650
BstDEI	CTNAG	5 cut(s)	372, 403, 972, 1067, 1210
BstENI	CCTNNNNNAGG	2 cut(s)	402, 744
BstF5I	GGATG	4 cut(s)	152, 733, 775, 1173
BstH2I	RGCGCY	1 cut(s)	1067
BstHHI	GCGC	2 cut(s)	1066, 1073
BstKTI	GATC	7 cut(s)	22, 37, 250, 422, 724, 802, 1127
BstMAI	GTCTC	2 cut(s)	652, 784
BstMBI	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
BstMWI	GCNNNNNNNGC	3 cut(s)	692, 863, 1070
BstNI	CCWGG	3 cut(s)	586, 822, 999
BstNSI	RCATGY	3 cut(s)	190, 320, 551
BstSCI	CCNGG	3 cut(s)	584, 820, 997
BstSFI	CTRYAG	1 cut(s)	412
BstV1I	GCAGC	2 cut(s)	679, 820
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu15I	ATCGAT	1 cut(s)	519
BsuTUI	ATCGAT	1 cut(s)	519
BtsCI	GGATG	4 cut(s)	152, 733, 775, 1173
BtsIMutI	CAGTG	1 cut(s)	162
CfoI	GCGC	2 cut(s)	1066, 1073
Cfr13I	GGNCC	2 cut(s)	1264, 1303
ClaI	ATCGAT	1 cut(s)	519
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	4 cut(s)	137, 152, 164, 868
CviAII	CATG	6 cut(s)	187, 215, 317, 548, 797, 1180
CviQI	GTAC	4 cut(s)	137, 152, 164, 868
DdeI	CTNAG	5 cut(s)	372, 403, 972, 1067, 1210
DpnI	GATC	7 cut(s)	21, 36, 249, 421, 723, 801, 1126
DpnII	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
DraI	TTTAAA	2 cut(s)	205, 592
Eam1104I	CTCTTC	2 cut(s)	285, 650
EarI	CTCTTC	2 cut(s)	285, 650
Eco47I	GGWCC	2 cut(s)	1264, 1303
Eco57I	CTGAAG	3 cut(s)	309, 762, 1112
EcoNI	CCTNNNNNAGG	2 cut(s)	402, 744
EcoO109I	RGGNCCY	1 cut(s)	1303
EcoRII	CCWGG	3 cut(s)	584, 820, 997
EcoT22I	ATGCAT	1 cut(s)	516
FaeI	CATG	6 cut(s)	190, 218, 320, 551, 800, 1183
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	6 cut(s)	186, 214, 316, 547, 796, 1179
Fnu4HI	GCNGC	2 cut(s)	693, 834
FokI	GGATG	4 cut(s)	159, 740, 762, 1180
Fsp4HI	GCNGC	2 cut(s)	693, 834
FspBI	CTAG	3 cut(s)	72, 321, 461
GlaI	GCGC	2 cut(s)	1065, 1072
GluI	GCNGC	2 cut(s)	693, 834
HaeII	RGCGCY	1 cut(s)	1067
HapII	CCGG	1 cut(s)	725
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	2 cut(s)	1066, 1073
Hin1II	CATG	6 cut(s)	190, 218, 320, 551, 800, 1183
Hin6I	GCGC	2 cut(s)	1064, 1071
HinP1I	GCGC	2 cut(s)	1064, 1071
HindIII	AAGCTT	3 cut(s)	374, 914, 1271
HinfI	GANTC	7 cut(s)	263, 350, 408, 451, 596, 1019, 1052
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	5 cut(s)	125, 620, 632, 871, 1123
Hpy166II	GTNNAC	5 cut(s)	152, 184, 575, 767, 1150
Hpy188I	TCNGA	3 cut(s)	268, 1024, 1213
Hpy8I	GTNNAC	5 cut(s)	152, 184, 575, 767, 1150
Hpy99I	CGWCG	3 cut(s)	68, 104, 1111
HpyAV	CCTTC	5 cut(s)	227, 261, 704, 740, 1087
HpyCH4III	ACNGT	4 cut(s)	82, 572, 771, 1111
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	514, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	692, 863, 1070
HpyF3I	CTNAG	5 cut(s)	372, 403, 972, 1067, 1210
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	6 cut(s)	190, 218, 320, 551, 800, 1183
HspAI	GCGC	2 cut(s)	1064, 1071
Kpn2I	TCCGGA	1 cut(s)	724
Kzo9I	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	992, 1037, 1103
Lsp1109I	GCAGC	2 cut(s)	679, 820
LweI	GCATC	3 cut(s)	501, 718, 936
MaeI	CTAG	3 cut(s)	72, 321, 461
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	3 cut(s)	140, 172, 489
MalI	GATC	7 cut(s)	21, 36, 249, 421, 723, 801, 1126
MboI	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
MboII	GAAGA	9 cut(s)	251, 267, 302, 509, 516, 667, 755, 886, 1015
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	3 cut(s)	95, 426, 529
MlyI	GAGTC	2 cut(s)	445, 1061
MmeI	TCCRAC	1 cut(s)	1015
Mph1103I	ATGCAT	1 cut(s)	516
MroI	TCCGGA	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	4 cut(s)	204, 591, 630, 704
MslI	CAYNNNNRTG	3 cut(s)	321, 546, 648
MspI	CCGG	1 cut(s)	725
MspR9I	CCNGG	3 cut(s)	586, 822, 999
Mva1269I	GAATGC	1 cut(s)	1298
MvaI	CCWGG	3 cut(s)	586, 822, 999
MwoI	GCNNNNNNNGC	3 cut(s)	692, 863, 1070
NdeII	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
NlaIII	CATG	6 cut(s)	190, 218, 320, 551, 800, 1183
NlaIV	GGNNCC	3 cut(s)	21, 1039, 1304
NmeAIII	GCCGAG	1 cut(s)	1066
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	3 cut(s)	190, 320, 551
PciI	ACATGT	2 cut(s)	186, 547
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	82, 105
PctI	GAATGC	1 cut(s)	1298
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	5 cut(s)	263, 350, 408, 596, 1019
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	694, 835
PleI	GAGTC	2 cut(s)	445, 1060
PpsI	GAGTC	2 cut(s)	445, 1060
PpuMI	RGGWCCY	1 cut(s)	1303
PscI	ACATGT	2 cut(s)	186, 547
Psp5II	RGGWCCY	1 cut(s)	1303
Psp6I	CCWGG	3 cut(s)	584, 820, 997
PspGI	CCWGG	3 cut(s)	584, 820, 997
PspN4I	GGNNCC	3 cut(s)	21, 1039, 1304
PspPI	GGNCC	2 cut(s)	1264, 1303
PspPPI	RGGWCCY	1 cut(s)	1303
PsrI	GAACNNNNNNTAC	4 cut(s)	165, 197, 383, 415
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	4 cut(s)	138, 153, 165, 869
RsaNI	GTAC	4 cut(s)	137, 152, 164, 868
RseI	CAYNNNNRTG	3 cut(s)	321, 546, 648
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	204, 591, 630, 704
SatI	GCNGC	2 cut(s)	693, 834
Sau3AI	GATC	7 cut(s)	19, 34, 247, 419, 721, 799, 1124
Sau96I	GGNCC	2 cut(s)	1264, 1303
SchI	GAGTC	2 cut(s)	445, 1061
ScrFI	CCNGG	3 cut(s)	586, 822, 999
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	3 cut(s)	501, 718, 936
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	1264, 1303
SmiMI	CAYNNNNRTG	3 cut(s)	321, 546, 648
SmlI	CTYRAG	3 cut(s)	194, 1049, 1297
SmoI	CTYRAG	3 cut(s)	194, 1049, 1297
Sse9I	AATT	3 cut(s)	95, 426, 529
SsiI	CCGC	1 cut(s)	857
SspMI	CTAG	3 cut(s)	72, 321, 461
StyD4I	CCNGG	3 cut(s)	584, 820, 997
TaaI	ACNGT	4 cut(s)	82, 572, 771, 1111
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	3 cut(s)	102, 519, 1055
TaqII	GACCGA	1 cut(s)	1281
TasI	AATT	3 cut(s)	95, 426, 529
TfiI	GAWTC	5 cut(s)	263, 350, 408, 596, 1019
Tru1I	TTAA	4 cut(s)	204, 591, 630, 704
Tru9I	TTAA	4 cut(s)	204, 591, 630, 704
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	2 cut(s)	692, 833
TspDTI	ATGAA	9 cut(s)	276, 569, 588, 745, 764, 1148, 1199, 1208, 1305
TspGWI	ACGGA	2 cut(s)	159, 1134
TspRI	CASTG	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	1264, 1303
XagI	CCTNNNNNAGG	2 cut(s)	402, 744
XapI	RAATTY	2 cut(s)	95, 426
XbaI	TCTAGA	2 cut(s)	71, 460
XceI	RCATGY	3 cut(s)	190, 320, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	72, 321, 461
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.