Rorug02G0126500

Peptidase C26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002132
Physical Location & Seq
Forward (+)
10889966 .. 10890937
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0126500.1

Sequence Viewer

Length: 636 bp
ATGTCTAGGATAAGTTTCTTCGGTGCAATAGAGCTCCCTATGGCAGAGAACCTTGATCTCCAGATGTACCGAAAAACTGCAGAGGTCTTGTGTGGACTTATACCTGATTCACCTACGGCCGCACCTGACAGAACAGACAATGGTCTGATATGGGTGGAAGAATGGAACTGTCTACAACATGCTATGTCTTCAGCCTCTCTAGCAGTTCTCTATAGAGACTACATGGTTACGTCTCAGACTGAAATGCTGTATTGTGATGGGAAAATTTACAAACCTGAAGATCTTCGTAGCTTCGCCATCTCTCAGGCAGATTACGCGTTGGGAAAAAATCCGATGAAGATGAGTTATCTTGTAGGGCATGGGGGTAACTACCCTCAACAAGTGCACCATAGGGGATCTTCCATTCCGGTTGATGCAGACACTGGCTGCAGAGATGGGTTTAAATGGCTGTACTCCCCCGATCAGAATCCAAATGTAGCTGTTGGTGCCCTGGTTGGTGGCCCTTTTCAGAATGATAGCTATATGGATATCAGGAACAATTCAAAGCAAGGTGAACCAAGCACTTACAATAGTGCTCTCATTGTTGCCCTGCTGTCTGGCTTAGTTTCCACTTCTTCGGTGCCCAAGCACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C26

Protein Analysis

211

Amino Acids

23.23

Weight (kDa)

5.28

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 19 - 198 1.8e-44 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 634
AccB1I GGYRCC 2 cut(s) 485, 619
AccI GTMKAC 1 cut(s) 172
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 2 cut(s) 174, 297
AfaI GTAC 2 cut(s) 68, 452
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 1 cut(s) 543
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 4 cut(s) 34, 291, 479, 519
AluI AGCT 4 cut(s) 34, 291, 479, 519
Alw21I GWGCWC 3 cut(s) 36, 387, 577
Alw26I GTCTC 2 cut(s) 210, 237
Alw44I GTGCAC 1 cut(s) 383
AlwI GGATC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 2 cut(s) 117, 499
ApaLI GTGCAC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 102, 563
BaeGI GKGCMC 3 cut(s) 387, 490, 624
BanI GGYRCC 2 cut(s) 485, 619
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 3 cut(s) 36, 387, 577
BbvI GCAGC 1 cut(s) 413
BccI CCATC 3 cut(s) 251, 305, 428
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 491
BcoDI GTCTC 2 cut(s) 210, 237
BfaI CTAG 2 cut(s) 6, 200
BfmI CTRYAG 3 cut(s) 78, 211, 427
BglII AGATCT 1 cut(s) 280
BisI GCNGC 2 cut(s) 120, 427
BlsI GCNGC 2 cut(s) 121, 428
Bme1390I CCNGG 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 2 cut(s) 487, 621
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 1 cut(s) 403
BoxI GACNNNNGTC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 1 cut(s) 489
BseJI GATNNNNATC 1 cut(s) 465
BseMII CTCAG 2 cut(s) 248, 317
BseNI ACTGG 1 cut(s) 427
BseSI GKGCMC 3 cut(s) 387, 490, 624
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 119, 501
BshNI GGYRCC 2 cut(s) 485, 619
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 36, 387, 577
BsiSI CCGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 210, 237
BsmBI CGTCTC 1 cut(s) 237
BsnI GGCC 2 cut(s) 119, 501
Bsp1286I GDGCHC 5 cut(s) 36, 387, 490, 577, 624
Bsp143I GATC 4 cut(s) 55, 280, 395, 460
BspACI CCGC 1 cut(s) 120
BspANI GGCC 2 cut(s) 119, 501
BspCNI CTCAG 2 cut(s) 247, 316
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 487, 621
BspMAI CTGCAG 2 cut(s) 82, 431
BspPI GGATC 1 cut(s) 403
BspT107I GGYRCC 2 cut(s) 485, 619
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 4 cut(s) 55, 280, 395, 460
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 234, 303, 601
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 4 cut(s) 58, 283, 398, 463
BstMAI GTCTC 2 cut(s) 210, 237
BstMBI GATC 4 cut(s) 55, 280, 395, 460
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 200, 314, 485
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 1 cut(s) 182
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 3 cut(s) 78, 211, 427
BstSLI GKGCMC 3 cut(s) 387, 490, 624
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 2 cut(s) 280, 395
BstYI RGATCY 2 cut(s) 280, 395
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 119, 501
BtsIMutI CAGTG 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 67, 451
CviAII CATG 3 cut(s) 179, 223, 359
CviQI GTAC 2 cut(s) 67, 451
DdeI CTNAG 3 cut(s) 234, 303, 601
DpnI GATC 4 cut(s) 57, 282, 397, 462
DpnII GATC 4 cut(s) 55, 280, 395, 460
DraI TTTAAA 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 2 cut(s) 174, 297
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 489
EcoRV GATATC 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 3 cut(s) 182, 226, 362
FatI CATG 3 cut(s) 178, 222, 358
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 120, 427
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 120, 427
FspBI CTAG 2 cut(s) 6, 200
GluI GCNGC 2 cut(s) 120, 427
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 2 cut(s) 119, 501
HapII CCGG 1 cut(s) 407
Hin1II CATG 3 cut(s) 182, 226, 362
HinfI GANTC 2 cut(s) 107, 466
HpaII CCGG 1 cut(s) 407
HphI GGTGA 2 cut(s) 102, 563
Hpy166II GTNNAC 4 cut(s) 95, 173, 385, 554
Hpy188I TCNGA 5 cut(s) 147, 237, 333, 465, 510
Hpy188III TCNNGA 2 cut(s) 61, 532
Hpy8I GTNNAC 4 cut(s) 95, 173, 385, 554
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 5 cut(s) 26, 80, 385, 416, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 314, 485
HpyF3I CTNAG 3 cut(s) 234, 303, 601
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 3 cut(s) 182, 226, 362
Kzo9I GATC 4 cut(s) 55, 280, 395, 460
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 6, 200
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 226, 365
MalI GATC 4 cut(s) 57, 282, 397, 462
MboI GATC 4 cut(s) 55, 280, 395, 460
MboII GAAGA 8 cut(s) 10, 170, 180, 275, 290, 349, 390, 606
MflI RGATCY 2 cut(s) 280, 395
MhlI GDGCHC 5 cut(s) 36, 387, 490, 577, 624
MluCI AATT 2 cut(s) 264, 538
MluI ACGCGT 1 cut(s) 315
MnlI CCTC 3 cut(s) 76, 205, 384
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 441
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 491
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 200, 314, 485
NdeII GATC 4 cut(s) 55, 280, 395, 460
NlaIII CATG 3 cut(s) 182, 226, 362
NlaIV GGNNCC 2 cut(s) 487, 621
NspI RCATGY 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 107, 466
PkrI GCNGC 2 cut(s) 121, 428
PshAI GACNNNNGTC 1 cut(s) 141
PsiI TTATAA 1 cut(s) 634
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 487, 621
PspPI GGNCC 1 cut(s) 500
PstI CTGCAG 2 cut(s) 82, 431
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 280, 395
RsaI GTAC 2 cut(s) 68, 452
RsaNI GTAC 2 cut(s) 67, 451
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 2 cut(s) 120, 427
Sau3AI GATC 4 cut(s) 55, 280, 395, 460
Sau96I GGNCC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 5 cut(s) 36, 387, 490, 577, 624
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 3 cut(s) 78, 211, 427
Sse9I AATT 2 cut(s) 264, 538
SsiI CCGC 1 cut(s) 120
SspMI CTAG 2 cut(s) 6, 200
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 233
TasI AATT 2 cut(s) 264, 538
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 107, 466
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 427
TseI GCWGC 1 cut(s) 426
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 383
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 2 cut(s) 6, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.