Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002132

Physical Location & Seq

Genomic Coordinates Forward (+)

44914947 .. 44915862

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0276800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCCCACCTCTCCGACCCCAAAGCCATCGCCGCCATGACCCGCGCCGTCTCCGACGTCGCCCAGACCCGCTCCGTCCTCAACGCCCTCGACGACCGTCCCGACCACGAGACCGTAGACACCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTCTCTCCAAGAAGCTCGAGGACCTCGTCCGCGCCTATATTGTTAACGGCGACTCGCATAACAAAACCAATAAGAAGAAGAAGAACAAGAAATCCAAAACTGACACAGTCGCCGTGATTCCCACCGTCACCGTAGCCATCGCCGGTTCCATCATTCACAACGCTCAGTCCCTCGAACTCGCCACTCGGGTACTTCTCTATTCCTTTAATCCCTCCCTACCCAACAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0022603 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065007 GO:1900618 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

128

Amino Acids

13.92

Weight (kDa)

9.66

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66860 AT5G38200 AT5G38200 AT5G38200
fragaria_vesca	FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_1g15830 FvH4_4g26770
malus_domestica	MD09G1255400.v1.1 MD16G1037600.v1.1 MD17G1248500.v1.1
prunus_persica	Prupe.1G316200_v2.0.a1 Prupe.3G147100_v2.0.a1
pyrus_communis	pycom09g17120 pycom17g25160 pycom17g25200
rosa_chinensis	RchiOBHm_Chr2g0105131 RchiOBHm_Chr4g0434451 RchiOBHm_Chr4g0434461
rosa_laevigata	RLG00000006670 RLG00000017405
rosa_multiflora	Rmu_sc0001170.1_g000001 Rmu_sc0002251.1_g000018 Rmu_sc0002251.1_g000020 Rmu_sc0005899.1_g000007 Rmu_sc0006734.1_g000002
rosa_roxburghii	Rroxscaffold_2G00138400 Rroxscaffold_5G00375810
rosa_rugosa	Rorug02G0126400 Rorug02G0126500 Rorug02G0126600 Rorug04G0276800 Rorug04G0276900
rosa_samantha	Rh2AG177300 Rh2BG185300 Rh2CG181800 Rh2DG183400 Rh4AG332400 Rh4BG340200 Rh4CG355400 Rh4DG335600
rosa_wichuraiana	Rw2G013910 Rw4G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	2 cut(s)	45, 186
AciI	CCGC	5 cut(s)	33, 43, 70, 123, 184
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	2 cut(s)	136, 169
AluI	AGCT	2 cut(s)	136, 169
Alw26I	GTCTC	2 cut(s)	55, 104
Ama87I	CYCGRG	2 cut(s)	170, 339
AoxI	GGCC	1 cut(s)	129
AspLEI	GCGC	2 cut(s)	47, 188
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	2 cut(s)	170, 339
AvaII	GGWCC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	107
BccI	CCATC	3 cut(s)	35, 299, 311
BceAI	ACGGC	3 cut(s)	32, 217, 251
BcoDI	GTCTC	2 cut(s)	55, 104
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	2 cut(s)	170, 339
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	301
BoxI	GACNNNNGTC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	332
Bsh1236I	CGCG	2 cut(s)	45, 186
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	2 cut(s)	170, 339
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	84, 307
BsmAI	GTCTC	2 cut(s)	55, 104
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	84, 307
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	2 cut(s)	170, 339
BspACI	CCGC	5 cut(s)	33, 43, 70, 123, 184
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	2 cut(s)	45, 186
BspLI	GGNNCC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	107
Bst4CI	ACNGT	5 cut(s)	98, 115, 262, 280, 286
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	318
BstFNI	CGCG	2 cut(s)	45, 186
BstHHI	GCGC	2 cut(s)	47, 188
BstMAI	GTCTC	2 cut(s)	55, 104
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 137
BstPAI	GACNNNNGTC	1 cut(s)	96
BstUI	CGCG	2 cut(s)	45, 186
BsuRI	GGCC	1 cut(s)	131
BtgZI	GCGATG	2 cut(s)	13, 277
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	2 cut(s)	47, 188
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	5 cut(s)	26, 131, 136, 169, 290
CviKI_1	RGCY	5 cut(s)	26, 131, 136, 169, 290
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	2 cut(s)	170, 339
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 192, 213
FaqI	GGGAC	2 cut(s)	84, 307
FatI	CATG	1 cut(s)	36
FauI	CCCGC	2 cut(s)	50, 77
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	2 cut(s)	46, 187
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	2 cut(s)	47, 188
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	2 cut(s)	45, 186
HinP1I	GCGC	2 cut(s)	45, 186
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	149, 206, 271
HpaI	GTTAAC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	118, 153, 199
Hpy188I	TCNGA	2 cut(s)	16, 55
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	3 cut(s)	118, 153, 199
Hpy99I	CGWCG	3 cut(s)	59, 62, 95
HpyCH4III	ACNGT	5 cut(s)	98, 115, 262, 280, 286
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 137
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	2 cut(s)	45, 186
KspAI	GTTAAC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	2 cut(s)	77, 310
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	280
MbiI	CCGCTC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	241, 244, 247
MlyI	GAGTC	2 cut(s)	158, 200
MmeI	TCCRAC	2 cut(s)	39, 78
MnlI	CCTC	7 cut(s)	20, 89, 98, 166, 188, 335, 376
MseI	TTAA	2 cut(s)	198, 360
MspI	CCGG	1 cut(s)	297
MvnI	CGCG	2 cut(s)	45, 186
MwoI	GCNNNNNNNGC	2 cut(s)	32, 137
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	4 cut(s)	90, 99, 144, 177
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	2 cut(s)	179, 260
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	157, 200
PpsI	GAGTC	2 cut(s)	157, 200
PpuMI	RGGWCCY	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	170
PsyI	GACNNNGTC	2 cut(s)	179, 260
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	198, 360
SatI	GCNGC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	158, 200
SetI	ASST	5 cut(s)	12, 60, 138, 171, 180
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	5 cut(s)	33, 43, 70, 123, 184
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	5 cut(s)	98, 115, 262, 280, 286
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	4 cut(s)	90, 147, 171, 327
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	198, 360
Tru9I	TTAA	2 cut(s)	198, 360
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	64
Tth111I	GACNNNGTC	2 cut(s)	179, 260
VpaK11BI	GGWCC	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	117
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.