Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Reverse (-)

25048158 .. 25049667

Gene Structure 1510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACTATGGTCGCTCCTTTCAACGGACTTAAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCTAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTGTGGCCTCCGATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGATTCCGAATTGGCTAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGAAGGAAGTGGAAGAGTGCAAGAAGGAGTACCCCAATGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0015979 GO:0016020 GO:0016043 GO:0019904 GO:0022607 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0110102 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

180

Amino Acids

20.22

Weight (kDa)

7.59

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 42	8.7e-19	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	67 - 102	1.5e-09	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	6 cut(s)	24, 90, 109, 150, 268, 405
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	3 cut(s)	320, 362, 446
AfiI	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
AflII	CTTAAG	1 cut(s)	80
AgeI	ACCGGT	1 cut(s)	536
AgsI	TTSAA	3 cut(s)	73, 293, 418
AluBI	AGCT	2 cut(s)	379, 531
AluI	AGCT	2 cut(s)	379, 531
Alw21I	GWGCWC	2 cut(s)	309, 330
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	2 cut(s)	51, 176
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	293
AsiGI	ACCGGT	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	330, 526
Bbv12I	GWGCWC	2 cut(s)	309, 330
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	143, 347
BceAI	ACGGC	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	197
BfrI	CTTAAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	510
BoxI	GACNNNNGTC	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
Bpu10I	CCTNAGC	2 cut(s)	48, 246
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	368, 496
Bse3DI	GCAATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	368, 496
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	100
BshFI	GGCC	2 cut(s)	53, 178
BshTI	ACCGGT	1 cut(s)	536
BsiHKAI	GWGCWC	2 cut(s)	309, 330
BsiSI	CCGG	3 cut(s)	44, 342, 537
BslI	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	53, 178
Bsp1286I	GDGCHC	2 cut(s)	309, 330
Bsp143I	GATC	1 cut(s)	465
BspACI	CCGC	6 cut(s)	24, 90, 109, 150, 268, 405
BspANI	GGCC	2 cut(s)	53, 178
BspCNI	CTCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	473
BspTI	CTTAAG	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	368, 496
BssAI	RCCGGY	1 cut(s)	536
BssMI	GATC	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	323, 332, 360
Bst6I	CTCTTC	3 cut(s)	25, 148, 423
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	48, 246
BstENI	CCTNNNNNAGG	1 cut(s)	460
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 101, 175
BstNSI	RCATGY	1 cut(s)	169
BstPAI	GACNNNNGTC	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	53, 178
BtsIMutI	CAGTG	1 cut(s)	503
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	536
Csp6I	GTAC	3 cut(s)	319, 361, 445
CspAI	ACCGGT	1 cut(s)	536
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	3 cut(s)	319, 361, 445
DdeI	CTNAG	2 cut(s)	48, 246
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
Eam1104I	CTCTTC	3 cut(s)	25, 148, 423
EarI	CTCTTC	3 cut(s)	25, 148, 423
EciI	GGCGGA	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	460
EcoRI	GAATTC	1 cut(s)	293
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	14, 32, 59, 167, 351
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	53, 178
HapII	CCGG	3 cut(s)	44, 342, 537
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	2 cut(s)	160, 256
HindII	GTYRAC	2 cut(s)	160, 256
HindIII	AAGCTT	2 cut(s)	377, 529
HinfI	GANTC	5 cut(s)	205, 233, 280, 401, 474
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	3 cut(s)	44, 342, 537
HphI	GGTGA	2 cut(s)	330, 526
Hpy166II	GTNNAC	3 cut(s)	160, 256, 319
Hpy188I	TCNGA	3 cut(s)	183, 238, 473
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	3 cut(s)	160, 256, 319
HpyAV	CCTTC	5 cut(s)	106, 227, 412, 433, 466
HpyCH4III	ACNGT	3 cut(s)	323, 332, 360
HpyCH4V	TGCA	5 cut(s)	165, 169, 396, 435, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 101, 175
HpyF3I	CTNAG	2 cut(s)	48, 246
Hsp92II	CATG	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	70, 304
LpnPI	CCDG	8 cut(s)	35, 57, 114, 155, 234, 349, 355, 509
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	1 cut(s)	467
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	1 cut(s)	465
MboII	GAAGA	4 cut(s)	12, 165, 205, 440
MhlI	GDGCHC	2 cut(s)	309, 330
MluCI	AATT	2 cut(s)	239, 293
MlyI	GAGTC	2 cut(s)	199, 395
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	19, 49, 97, 189
MseI	TTAA	3 cut(s)	81, 159, 541
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	3 cut(s)	44, 342, 537
MspR9I	CCNGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	44, 101, 175
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	1 cut(s)	169
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PaqCI	CACCTGC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	233, 280, 474
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	199, 395
PpsI	GAGTC	2 cut(s)	199, 395
PshAI	GACNNNNGTC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	100
RsaI	GTAC	3 cut(s)	320, 362, 446
RsaNI	GTAC	3 cut(s)	319, 361, 445
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	81, 159, 541
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	465
SchI	GAGTC	2 cut(s)	199, 395
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	309, 330
SetI	ASST	6 cut(s)	174, 219, 228, 264, 381, 533
SfaNI	GCATC	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	80, 408
SmoI	CTYRAG	2 cut(s)	80, 408
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	239, 293
SsiI	CCGC	6 cut(s)	24, 90, 109, 150, 268, 405
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	3 cut(s)	323, 332, 360
TaqI	TCGA	2 cut(s)	297, 477
TasI	AATT	2 cut(s)	239, 293
TfiI	GAWTC	3 cut(s)	233, 280, 474
Tru1I	TTAA	3 cut(s)	81, 159, 541
Tru9I	TTAA	3 cut(s)	81, 159, 541
TscAI	CASTG	1 cut(s)	503
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	448, 499
TspGWI	ACGGA	2 cut(s)	90, 324
TspRI	CASTG	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	80
XagI	CCTNNNNNAGG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.