RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430 |
| fragaria_vesca | FvH4_4g27330 FvH4_6g26030 |
| malus_domestica | MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1 |
| prunus_persica | Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1 |
| pyrus_communis | pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720 |
| rosa_chinensis | RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151 |
| rosa_laevigata | RLG00000006615 RLG00000018888 |
| rosa_multiflora | Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037 |
| rosa_roxburghii | Rroxscaffold_2G00117430 Rroxscaffold_5G00376370 |
| rosa_rugosa | Rorug02G0261500 Rorug04G0282600 |
| rosa_samantha | Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700 |
| rosa_wichuraiana | Rw2G025780 Rw4G029500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 155 |
| AciI | CCGC | 6 cut(s) | 30, 42, 45, 99, 159, 277 |
| AcoI | YGGCCR | 2 cut(s) | 252, 364 |
| AcsI | RAATTY | 1 cut(s) | 302 |
| AfaI | GTAC | 2 cut(s) | 329, 371 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 83, 155, 194, 398 |
| AjnI | CCWGG | 1 cut(s) | 349 |
| AluBI | AGCT | 3 cut(s) | 104, 388, 433 |
| AluI | AGCT | 3 cut(s) | 104, 388, 433 |
| Alw21I | GWGCWC | 2 cut(s) | 318, 435 |
| Alw26I | GTCTC | 1 cut(s) | 206 |
| Ama87I | CYCGRG | 2 cut(s) | 242, 434 |
| AoxI | GGCC | 5 cut(s) | 3, 85, 185, 252, 364 |
| ApeKI | GCWGC | 1 cut(s) | 101 |
| ApoI | RAATTY | 1 cut(s) | 302 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 206 |
| AspS9I | GGNCC | 1 cut(s) | 375 |
| AsuC2I | CCSGG | 1 cut(s) | 53 |
| AsuHPI | GGTGA | 3 cut(s) | 73, 106, 339 |
| AvaI | CYCGRG | 2 cut(s) | 242, 434 |
| AvaII | GGWCC | 1 cut(s) | 375 |
| BalI | TGGCCA | 1 cut(s) | 254 |
| BanII | GRGCYC | 1 cut(s) | 435 |
| Bbv12I | GWGCWC | 2 cut(s) | 318, 435 |
| BbvI | GCAGC | 1 cut(s) | 113 |
| BccI | CCATC | 2 cut(s) | 119, 279 |
| BceAI | ACGGC | 1 cut(s) | 379 |
| BciT130I | CCWGG | 1 cut(s) | 351 |
| BciVI | GTATCC | 1 cut(s) | 347 |
| BcnI | CCSGG | 1 cut(s) | 53 |
| BcoDI | GTCTC | 1 cut(s) | 206 |
| BfmI | CTRYAG | 2 cut(s) | 189, 534 |
| BfuI | GTATCC | 1 cut(s) | 347 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 53 |
| BisI | GCNGC | 4 cut(s) | 30, 45, 99, 102 |
| BlsI | GCNGC | 4 cut(s) | 31, 46, 100, 103 |
| Bme1390I | CCNGG | 2 cut(s) | 53, 351 |
| Bme18I | GGWCC | 1 cut(s) | 375 |
| BmeT110I | CYCGRG | 2 cut(s) | 242, 434 |
| BmgT120I | GGNCC | 1 cut(s) | 375 |
| BmiI | GGNNCC | 1 cut(s) | 291 |
| BmrFI | CCNGG | 2 cut(s) | 53, 351 |
| BmsI | GCATC | 3 cut(s) | 392, 451, 519 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 3 cut(s) | 51, 249, 255 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 83, 155, 194, 398 |
| Bse118I | RCCGGY | 2 cut(s) | 83, 366 |
| Bse1I | ACTGG | 1 cut(s) | 377 |
| Bse3DI | GCAATG | 2 cut(s) | 160, 176 |
| BseBI | CCWGG | 1 cut(s) | 351 |
| BseDI | CCNNGG | 3 cut(s) | 51, 249, 255 |
| BseGI | GGATG | 2 cut(s) | 290, 407 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 83, 155, 194, 398 |
| BseMI | GCAATG | 2 cut(s) | 160, 176 |
| BseNI | ACTGG | 1 cut(s) | 377 |
| BseRI | GAGGAG | 1 cut(s) | 452 |
| BseX3I | CGGCCG | 1 cut(s) | 364 |
| BseXI | GCAGC | 1 cut(s) | 113 |
| BsgI | GTGCAG | 1 cut(s) | 399 |
| Bsh1285I | CGRYCG | 1 cut(s) | 367 |
| BshFI | GGCC | 5 cut(s) | 5, 87, 187, 254, 366 |
| BsiEI | CGRYCG | 1 cut(s) | 367 |
| BsiHKAI | GWGCWC | 2 cut(s) | 318, 435 |
| BsiHKCI | CYCGRG | 2 cut(s) | 242, 434 |
| BsiSI | CCGG | 3 cut(s) | 53, 84, 367 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 83, 155, 194, 398 |
| BsmAI | GTCTC | 1 cut(s) | 206 |
| BsnI | GGCC | 5 cut(s) | 5, 87, 187, 254, 366 |
| BsoBI | CYCGRG | 2 cut(s) | 242, 434 |
| Bsp1286I | GDGCHC | 2 cut(s) | 318, 435 |
| BspACI | CCGC | 6 cut(s) | 30, 42, 45, 99, 159, 277 |
| BspANI | GGCC | 5 cut(s) | 5, 87, 187, 254, 366 |
| BspLI | GGNNCC | 1 cut(s) | 291 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BsrDI | GCAATG | 2 cut(s) | 160, 176 |
| BsrFI | RCCGGY | 2 cut(s) | 83, 366 |
| BsrI | ACTGG | 1 cut(s) | 377 |
| BssAI | RCCGGY | 2 cut(s) | 83, 366 |
| BssECI | CCNNGG | 3 cut(s) | 51, 249, 255 |
| BssT1I | CCWWGG | 2 cut(s) | 249, 255 |
| Bst2UI | CCWGG | 1 cut(s) | 351 |
| Bst4CI | ACNGT | 3 cut(s) | 131, 193, 332 |
| Bst6I | CTCTTC | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 3 cut(s) | 64, 534, 538 |
| BstEII | GGTNACC | 1 cut(s) | 345 |
| BstF5I | GGATG | 2 cut(s) | 290, 407 |
| BstMAI | GTCTC | 1 cut(s) | 206 |
| BstMCI | CGRYCG | 1 cut(s) | 367 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 35, 44, 53 |
| BstNI | CCWGG | 1 cut(s) | 351 |
| BstPI | GGTNACC | 1 cut(s) | 345 |
| BstSCI | CCNGG | 2 cut(s) | 51, 349 |
| BstSFI | CTRYAG | 2 cut(s) | 189, 534 |
| BstV1I | GCAGC | 1 cut(s) | 113 |
| BstZI | CGGCCG | 1 cut(s) | 364 |
| BsuI | GTATCC | 1 cut(s) | 347 |
| BsuRI | GGCC | 5 cut(s) | 5, 87, 187, 254, 366 |
| BtgZI | GCGATG | 1 cut(s) | 505 |
| BtsCI | GGATG | 2 cut(s) | 290, 407 |
| BtsIMutI | CAGTG | 2 cut(s) | 136, 512 |
| Cac8I | GCNNGC | 3 cut(s) | 64, 534, 538 |
| Cfr10I | RCCGGY | 2 cut(s) | 83, 366 |
| Cfr13I | GGNCC | 1 cut(s) | 375 |
| Csp6I | GTAC | 2 cut(s) | 328, 370 |
| CviAII | CATG | 5 cut(s) | 13, 67, 175, 379, 394 |
| CviQI | GTAC | 2 cut(s) | 328, 370 |
| EaeI | YGGCCR | 2 cut(s) | 252, 364 |
| EagI | CGGCCG | 1 cut(s) | 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 157 |
| EarI | CTCTTC | 1 cut(s) | 157 |
| EciI | GGCGGA | 1 cut(s) | 174 |
| Ecl136II | GAGCTC | 1 cut(s) | 433 |
| EclXI | CGGCCG | 1 cut(s) | 364 |
| Eco130I | CCWWGG | 2 cut(s) | 249, 255 |
| Eco24I | GRGCYC | 1 cut(s) | 435 |
| Eco47I | GGWCC | 1 cut(s) | 375 |
| Eco52I | CGGCCG | 1 cut(s) | 364 |
| Eco53kI | GAGCTC | 1 cut(s) | 433 |
| Eco88I | CYCGRG | 2 cut(s) | 242, 434 |
| Eco91I | GGTNACC | 1 cut(s) | 345 |
| EcoICRI | GAGCTC | 1 cut(s) | 433 |
| EcoO65I | GGTNACC | 1 cut(s) | 345 |
| EcoRII | CCWGG | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 2 cut(s) | 249, 255 |
| EcoT22I | ATGCAT | 1 cut(s) | 176 |
| EcoT38I | GRGCYC | 1 cut(s) | 435 |
| ErhI | CCWWGG | 2 cut(s) | 249, 255 |
| FaeI | CATG | 5 cut(s) | 16, 70, 178, 382, 397 |
| FaiI | YATR | 7 cut(s) | 14, 68, 176, 200, 360, 380, 395 |
| FatI | CATG | 5 cut(s) | 12, 66, 174, 378, 393 |
| Fnu4HI | GCNGC | 4 cut(s) | 30, 45, 99, 102 |
| FokI | GGATG | 2 cut(s) | 297, 414 |
| FriOI | GRGCYC | 1 cut(s) | 435 |
| Fsp4HI | GCNGC | 4 cut(s) | 30, 45, 99, 102 |
| GluI | GCNGC | 4 cut(s) | 30, 45, 99, 102 |
| HaeIII | GGCC | 5 cut(s) | 5, 87, 187, 254, 366 |
| HapII | CCGG | 3 cut(s) | 53, 84, 367 |
| Hin1II | CATG | 5 cut(s) | 16, 70, 178, 382, 397 |
| HinfI | GANTC | 5 cut(s) | 214, 245, 321, 410, 483 |
| HpaII | CCGG | 3 cut(s) | 53, 84, 367 |
| HphI | GGTGA | 3 cut(s) | 73, 106, 339 |
| Hpy166II | GTNNAC | 1 cut(s) | 328 |
| Hpy188I | TCNGA | 2 cut(s) | 401, 482 |
| Hpy188III | TCNNGA | 3 cut(s) | 211, 242, 445 |
| Hpy8I | GTNNAC | 1 cut(s) | 328 |
| HpyAV | CCTTC | 5 cut(s) | 172, 236, 281, 421, 442 |
| HpyCH4III | ACNGT | 3 cut(s) | 131, 193, 332 |
| HpyCH4IV | ACGT | 1 cut(s) | 492 |
| HpyCH4V | TGCA | 6 cut(s) | 169, 174, 405, 416, 510, 536 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 35, 44, 53 |
| HpySE526I | ACGT | 1 cut(s) | 492 |
| Hsp92II | CATG | 5 cut(s) | 16, 70, 178, 382, 397 |
| LmnI | GCTCC | 2 cut(s) | 313, 430 |
| Lsp1109I | GCAGC | 1 cut(s) | 113 |
| LweI | GCATC | 3 cut(s) | 392, 451, 519 |
| MaeII | ACGT | 1 cut(s) | 492 |
| MaeIII | GTNAC | 2 cut(s) | 131, 345 |
| MboII | GAAGA | 2 cut(s) | 174, 214 |
| MhlI | GDGCHC | 2 cut(s) | 318, 435 |
| MlsI | TGGCCA | 1 cut(s) | 254 |
| MluCI | AATT | 1 cut(s) | 302 |
| MluNI | TGGCCA | 1 cut(s) | 254 |
| MlyI | GAGTC | 3 cut(s) | 208, 254, 404 |
| MmeI | TCCRAC | 1 cut(s) | 291 |
| MnlI | CCTC | 7 cut(s) | 16, 19, 58, 98, 151, 430, 433 |
| Mox20I | TGGCCA | 1 cut(s) | 254 |
| Mph1103I | ATGCAT | 1 cut(s) | 176 |
| MroXI | GAANNNNTTC | 1 cut(s) | 206 |
| MscI | TGGCCA | 1 cut(s) | 254 |
| MslI | CAYNNNNRTG | 2 cut(s) | 179, 459 |
| Msp20I | TGGCCA | 1 cut(s) | 254 |
| MspI | CCGG | 3 cut(s) | 53, 84, 367 |
| MspR9I | CCNGG | 2 cut(s) | 53, 351 |
| MvaI | CCWGG | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 35, 44, 53 |
| NciI | CCSGG | 1 cut(s) | 53 |
| NlaIII | CATG | 5 cut(s) | 16, 70, 178, 382, 397 |
| NlaIV | GGNNCC | 1 cut(s) | 291 |
| NmuCI | GTSAC | 2 cut(s) | 131, 345 |
| NsiI | ATGCAT | 1 cut(s) | 176 |
| PaeR7I | CTCGAG | 1 cut(s) | 434 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 405 |
| PdmI | GAANNNNTTC | 1 cut(s) | 206 |
| PfeI | GAWTC | 2 cut(s) | 321, 483 |
| PflFI | GACNNNGTC | 2 cut(s) | 217, 491 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 155 |
| PkrI | GCNGC | 4 cut(s) | 31, 46, 100, 103 |
| PleI | GAGTC | 3 cut(s) | 208, 253, 404 |
| PpsI | GAGTC | 3 cut(s) | 208, 253, 404 |
| Psp124BI | GAGCTC | 1 cut(s) | 435 |
| Psp6I | CCWGG | 1 cut(s) | 349 |
| PspEI | GGTNACC | 1 cut(s) | 345 |
| PspGI | CCWGG | 1 cut(s) | 349 |
| PspN4I | GGNNCC | 1 cut(s) | 291 |
| PspPI | GGNCC | 1 cut(s) | 375 |
| PspXI | VCTCGAGB | 1 cut(s) | 434 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsyI | GACNNNGTC | 2 cut(s) | 217, 491 |
| RsaI | GTAC | 2 cut(s) | 329, 371 |
| RsaNI | GTAC | 2 cut(s) | 328, 370 |
| RseI | CAYNNNNRTG | 2 cut(s) | 179, 459 |
| SacI | GAGCTC | 1 cut(s) | 435 |
| SatI | GCNGC | 4 cut(s) | 30, 45, 99, 102 |
| Sau96I | GGNCC | 1 cut(s) | 375 |
| SbfI | CCTGCAGG | 1 cut(s) | 538 |
| SchI | GAGTC | 3 cut(s) | 208, 254, 404 |
| ScrFI | CCNGG | 2 cut(s) | 53, 351 |
| SdaI | CCTGCAGG | 1 cut(s) | 538 |
| SduI | GDGCHC | 2 cut(s) | 318, 435 |
| SfaNI | GCATC | 3 cut(s) | 392, 451, 519 |
| SfcI | CTRYAG | 2 cut(s) | 189, 534 |
| Sfr274I | CTCGAG | 1 cut(s) | 434 |
| SinI | GGWCC | 1 cut(s) | 375 |
| SlaI | CTCGAG | 1 cut(s) | 434 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 179, 459 |
| SmlI | CTYRAG | 2 cut(s) | 89, 434 |
| SmoI | CTYRAG | 2 cut(s) | 89, 434 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 538 |
| Sse9I | AATT | 1 cut(s) | 302 |
| SsiI | CCGC | 6 cut(s) | 30, 42, 45, 99, 159, 277 |
| SstI | GAGCTC | 1 cut(s) | 435 |
| StyD4I | CCNGG | 2 cut(s) | 51, 349 |
| StyI | CCWWGG | 2 cut(s) | 249, 255 |
| TaaI | ACNGT | 3 cut(s) | 131, 193, 332 |
| TaiI | ACGT | 1 cut(s) | 495 |
| TaqI | TCGA | 3 cut(s) | 210, 435, 486 |
| TasI | AATT | 1 cut(s) | 302 |
| TauI | GCSGC | 3 cut(s) | 32, 47, 101 |
| TfiI | GAWTC | 2 cut(s) | 321, 483 |
| TscAI | CASTG | 2 cut(s) | 136, 512 |
| TseFI | GTSAC | 2 cut(s) | 131, 345 |
| TseI | GCWGC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 2 cut(s) | 131, 345 |
| TspDTI | ATGAA | 4 cut(s) | 191, 215, 440, 508 |
| TspGWI | ACGGA | 3 cut(s) | 333, 461, 485 |
| TspRI | CASTG | 2 cut(s) | 136, 512 |
| Tth111I | GACNNNGTC | 2 cut(s) | 217, 491 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 155 |
| VpaK11BI | GGWCC | 1 cut(s) | 375 |
| XapI | RAATTY | 1 cut(s) | 302 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 347 |
| XhoI | CTCGAG | 1 cut(s) | 434 |
| XmnI | GAANNNNTTC | 1 cut(s) | 206 |
| Zsp2I | ATGCAT | 1 cut(s) | 176 |