Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Reverse (-)

42164674 .. 42165445

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCTCCTCCATGTTCTCATCGTCTGCCGCAGTTGCCACCGCCGCCTCCCCGGCACAAGCCAGCATGGTCGCACCATTCACCGGCCTCAAGTCTGCCGCAGCTTTCCCCATCACCAGAAAGACTAACAGTGACATTACCTCACTCCCAAGCAATGGCGGAAGAGTGCAATGCATGAAGGTCTGGCCTACAATTGGTATGAAGAAGTTCGAGACTCTGTCCTACCTTCCACCACTTTCTTCCGAGTCCTTGGCCAAGGAAGTTGATTACCTTCTCCGCAAAGGATGGGTTCCCTGCTTGGAATTTGAGTTGGAGCACGGATTCGTGTACCGTGAGAACCACAGGTCACCTGGATACTATGACGGCCGGTACTGGACCATGTGGAAGCTACCCATGTTCGGATGCACCGATTCTGCACAAGTGTTGAAGGAGCTCGAGGAGGCCAAGACGGCTCACCCAGATGGTTTCATCCGTATCATCGGATTCGACAATGTCCGTCAAGTTCAGTGCATCAGTTTCATCGCCTACAAGCCTCCAGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

182

Amino Acids

20.11

Weight (kDa)

8.66

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 45	1.5e-18	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	70 - 178	1.1e-36	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	6 cut(s)	30, 42, 45, 99, 159, 277
AcoI	YGGCCR	2 cut(s)	252, 364
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	2 cut(s)	329, 371
AfiI	CCNNNNNNNGG	4 cut(s)	83, 155, 194, 398
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	349, 535
AluBI	AGCT	3 cut(s)	104, 388, 433
AluI	AGCT	3 cut(s)	104, 388, 433
Alw21I	GWGCWC	2 cut(s)	318, 435
Alw26I	GTCTC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	6 cut(s)	3, 85, 185, 252, 364, 441
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	375
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	73, 106, 339, 446
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	318, 435
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	3 cut(s)	119, 279, 455
BceAI	ACGGC	2 cut(s)	379, 465
BciT130I	CCWGG	2 cut(s)	351, 537
BciVI	GTATCC	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	347
BglI	GCCNNNNNGGC	2 cut(s)	53, 449
BisI	GCNGC	4 cut(s)	30, 45, 99, 102
BlsI	GCNGC	4 cut(s)	31, 46, 100, 103
Bme1390I	CCNGG	3 cut(s)	53, 351, 537
Bme18I	GGWCC	1 cut(s)	375
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	3 cut(s)	53, 351, 537
BmsI	GCATC	2 cut(s)	392, 519
BpmI	CTGGAG	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	51, 249, 255
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 155, 194, 398
Bse118I	RCCGGY	2 cut(s)	83, 366
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	2 cut(s)	160, 176
BseBI	CCWGG	2 cut(s)	351, 537
BseDI	CCNNGG	3 cut(s)	51, 249, 255
BseGI	GGATG	3 cut(s)	290, 407, 468
BseLI	CCNNNNNNNGG	4 cut(s)	83, 155, 194, 398
BseMI	GCAATG	2 cut(s)	160, 176
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	452
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	6 cut(s)	5, 87, 187, 254, 366, 443
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	2 cut(s)	318, 435
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	3 cut(s)	53, 84, 367
BslI	CCNNNNNNNGG	4 cut(s)	83, 155, 194, 398
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	6 cut(s)	5, 87, 187, 254, 366, 443
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	318, 435
BspACI	CCGC	6 cut(s)	30, 42, 45, 99, 159, 277
BspANI	GGCC	6 cut(s)	5, 87, 187, 254, 366, 443
BspLI	GGNNCC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	160, 176
BsrFI	RCCGGY	2 cut(s)	83, 366
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	2 cut(s)	83, 366
BssECI	CCNNGG	3 cut(s)	51, 249, 255
BssT1I	CCWWGG	2 cut(s)	249, 255
Bst2UI	CCWGG	2 cut(s)	351, 537
Bst4CI	ACNGT	2 cut(s)	131, 332
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	64
BstEII	GGTNACC	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	290, 407, 468
BstMAI	GTCTC	1 cut(s)	206
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 44, 53, 449
BstNI	CCWGG	2 cut(s)	351, 537
BstPI	GGTNACC	1 cut(s)	345
BstSCI	CCNGG	3 cut(s)	51, 349, 535
BstV1I	GCAGC	1 cut(s)	113
BstZI	CGGCCG	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	347
BsuRI	GGCC	6 cut(s)	5, 87, 187, 254, 366, 443
BtgZI	GCGATG	1 cut(s)	505
BtsCI	GGATG	3 cut(s)	290, 407, 468
BtsIMutI	CAGTG	2 cut(s)	136, 512
Cac8I	GCNNGC	1 cut(s)	64
Cfr10I	RCCGGY	2 cut(s)	83, 366
Cfr13I	GGNCC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	328, 370
CviAII	CATG	5 cut(s)	13, 67, 175, 379, 394
CviQI	GTAC	2 cut(s)	328, 370
EaeI	YGGCCR	2 cut(s)	252, 364
EagI	CGGCCG	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	433
EclXI	CGGCCG	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	249, 255
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	349, 535
EcoT14I	CCWWGG	2 cut(s)	249, 255
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	249, 255
FaeI	CATG	5 cut(s)	16, 70, 178, 382, 397
FaiI	YATR	7 cut(s)	14, 68, 176, 200, 360, 380, 395
FatI	CATG	5 cut(s)	12, 66, 174, 378, 393
Fnu4HI	GCNGC	4 cut(s)	30, 45, 99, 102
FokI	GGATG	3 cut(s)	297, 414, 455
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	30, 45, 99, 102
GluI	GCNGC	4 cut(s)	30, 45, 99, 102
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	6 cut(s)	5, 87, 187, 254, 366, 443
HapII	CCGG	3 cut(s)	53, 84, 367
Hin1II	CATG	5 cut(s)	16, 70, 178, 382, 397
HinfI	GANTC	5 cut(s)	214, 245, 321, 410, 483
HpaII	CCGG	3 cut(s)	53, 84, 367
HphI	GGTGA	4 cut(s)	73, 106, 339, 446
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	244, 401, 482
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	172, 236, 281, 421
HpyCH4III	ACNGT	2 cut(s)	131, 332
HpyCH4V	TGCA	5 cut(s)	169, 174, 405, 416, 510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 44, 53, 449
Hsp92II	CATG	5 cut(s)	16, 70, 178, 382, 397
LmnI	GCTCC	2 cut(s)	313, 430
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	392, 519
MaeIII	GTNAC	2 cut(s)	131, 345
MboII	GAAGA	3 cut(s)	174, 214, 231
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	318, 435
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	2 cut(s)	192, 302
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	208, 254
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	8 cut(s)	16, 19, 58, 98, 151, 430, 433, 543
Mox20I	TGGCCA	1 cut(s)	254
Mph1103I	ATGCAT	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	3 cut(s)	53, 84, 367
MspR9I	CCNGG	3 cut(s)	53, 351, 537
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	351, 537
MwoI	GCNNNNNNNGC	4 cut(s)	35, 44, 53, 449
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	5 cut(s)	16, 70, 178, 382, 397
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	131, 345
NsiI	ATGCAT	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	321, 410, 483
PflFI	GACNNNGTC	2 cut(s)	217, 491
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	31, 46, 100, 103
PleI	GAGTC	2 cut(s)	208, 253
PpsI	GAGTC	2 cut(s)	208, 253
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	349, 535
PspEI	GGTNACC	1 cut(s)	345
PspGI	CCWGG	2 cut(s)	349, 535
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	375
PspXI	VCTCGAGB	1 cut(s)	434
PsyI	GACNNNGTC	2 cut(s)	217, 491
RsaI	GTAC	2 cut(s)	329, 371
RsaNI	GTAC	2 cut(s)	328, 370
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	435
SatI	GCNGC	4 cut(s)	30, 45, 99, 102
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	2 cut(s)	208, 254
ScrFI	CCNGG	3 cut(s)	53, 351, 537
SduI	GDGCHC	2 cut(s)	318, 435
SetI	ASST	9 cut(s)	106, 143, 183, 228, 273, 347, 352, 390, 435
SfaNI	GCATC	2 cut(s)	392, 519
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	375
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	89, 434
SmoI	CTYRAG	2 cut(s)	89, 434
Sse9I	AATT	2 cut(s)	192, 302
SsiI	CCGC	6 cut(s)	30, 42, 45, 99, 159, 277
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	3 cut(s)	51, 349, 535
StyI	CCWWGG	2 cut(s)	249, 255
TaaI	ACNGT	2 cut(s)	131, 332
TaqI	TCGA	3 cut(s)	210, 435, 486
TasI	AATT	2 cut(s)	192, 302
TauI	GCSGC	3 cut(s)	32, 47, 101
TfiI	GAWTC	3 cut(s)	321, 410, 483
TscAI	CASTG	2 cut(s)	136, 512
TseFI	GTSAC	2 cut(s)	131, 345
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	2 cut(s)	131, 345
TspDTI	ATGAA	4 cut(s)	191, 215, 457, 508
TspGWI	ACGGA	3 cut(s)	333, 461, 485
TspRI	CASTG	2 cut(s)	136, 512
Tth111I	GACNNNGTC	2 cut(s)	217, 491
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.