Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Reverse (-)

15380907 .. 15382071

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTCCTCTATGTTCTCCTCCACCGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTTCTTTCCCGGTCACCCGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGAGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTAGTGACGTTGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTATGATGGACGATACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTGAAGAATGCAAGAAGGAGTACCCTGGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0015979 GO:0016020 GO:0016043 GO:0019904 GO:0022607 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0110102 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

181

Amino Acids

20.35

Weight (kDa)

7.58

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 42	1.9e-19	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	67 - 175	2.8e-38	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	5 cut(s)	27, 90, 109, 268, 405
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	2 cut(s)	320, 446
AfiI	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
AgsI	TTSAA	5 cut(s)	82, 239, 293, 418, 428
AjnI	CCWGG	1 cut(s)	448
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	162, 379, 531, 542
AluI	AGCT	4 cut(s)	162, 379, 531, 542
Alw21I	GWGCWC	2 cut(s)	309, 330
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	2 cut(s)	114, 176
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	455
AsuC2I	CCSGG	3 cut(s)	44, 101, 342
AsuHPI	GGTGA	3 cut(s)	64, 97, 526
BalI	TGGCCA	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	309, 330
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	143, 347
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	338
BcnI	CCSGG	3 cut(s)	44, 101, 342
BcoDI	GTCTC	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	4 cut(s)	44, 101, 342, 450
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	4 cut(s)	44, 101, 342, 450
BmsI	GCATC	2 cut(s)	383, 510
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	33, 393
BpuMI	CCSGG	3 cut(s)	44, 101, 342
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	42, 57, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	42, 57, 448
BseGI	GGATG	2 cut(s)	86, 398
BseLI	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
BseMI	GCAATG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	116, 178
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	2 cut(s)	309, 330
BsiSI	CCGG	4 cut(s)	44, 75, 101, 342
BslI	CCNNNNNNNGG	4 cut(s)	74, 185, 389, 462
BsmAI	GTCTC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	116, 178
Bsp1286I	GDGCHC	2 cut(s)	309, 330
Bsp143I	GATC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	5 cut(s)	27, 90, 109, 268, 405
BspANI	GGCC	2 cut(s)	116, 178
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	42, 57, 448
BssMI	GATC	1 cut(s)	465
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	453
BstDEI	CTNAG	2 cut(s)	227, 246
BstDSI	CCRYGG	1 cut(s)	57
BstEII	GGTNACC	2 cut(s)	34, 103
BstENI	CCTNNNNNAGG	1 cut(s)	460
BstF5I	GGATG	2 cut(s)	86, 398
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	465
BstNI	CCWGG	1 cut(s)	450
BstPI	GGTNACC	2 cut(s)	34, 103
BstSCI	CCNGG	4 cut(s)	42, 99, 340, 448
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	116, 178
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	86, 398
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	319, 445
CviAII	CATG	2 cut(s)	58, 166
CviQI	GTAC	2 cut(s)	319, 445
DdeI	CTNAG	2 cut(s)	227, 246
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	57
Eco91I	GGTNACC	2 cut(s)	34, 103
EcoNI	CCTNNNNNAGG	1 cut(s)	460
EcoO65I	GGTNACC	2 cut(s)	34, 103
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	503
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	61, 169
FaiI	YATR	4 cut(s)	14, 59, 167, 351
FatI	CATG	2 cut(s)	57, 165
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	2 cut(s)	73, 405
Fsp4HI	GCNGC	1 cut(s)	163
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	116, 178
HapII	CCGG	4 cut(s)	44, 75, 101, 342
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	2 cut(s)	61, 169
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	3 cut(s)	377, 529, 540
HinfI	GANTC	4 cut(s)	205, 280, 401, 474
HpaII	CCGG	4 cut(s)	44, 75, 101, 342
HphI	GGTGA	3 cut(s)	64, 97, 526
Hpy166II	GTNNAC	2 cut(s)	256, 319
Hpy188I	TCNGA	3 cut(s)	188, 392, 473
Hpy8I	GTNNAC	2 cut(s)	256, 319
HpyAV	CCTTC	5 cut(s)	163, 272, 412, 433, 466
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	165, 396, 435, 501
HpyF3I	CTNAG	2 cut(s)	227, 246
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	61, 169
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	70, 304
LpnPI	CCDG	8 cut(s)	57, 88, 114, 234, 349, 355, 435, 462
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	2 cut(s)	383, 510
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	34, 103, 230
MalI	GATC	1 cut(s)	467
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	1 cut(s)	465
MboII	GAAGA	3 cut(s)	165, 205, 440
MhlI	GDGCHC	2 cut(s)	309, 330
MlsI	TGGCCA	1 cut(s)	178
MluCI	AATT	2 cut(s)	239, 293
MluNI	TGGCCA	1 cut(s)	178
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	2 cut(s)	199, 395
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	19, 31, 49, 143, 227
Mox20I	TGGCCA	1 cut(s)	178
Mph1103I	ATGCAT	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	178
MseI	TTAA	1 cut(s)	544
MslI	CAYNNNNRTG	2 cut(s)	29, 170
Msp20I	TGGCCA	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	4 cut(s)	44, 75, 101, 342
MspR9I	CCNGG	4 cut(s)	44, 101, 342, 450
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	450
NarI	GGCGCC	1 cut(s)	453
NciI	CCSGG	3 cut(s)	44, 101, 342
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	2 cut(s)	61, 169
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	2 cut(s)	103, 230
NsiI	ATGCAT	1 cut(s)	503
OliI	CACNNNNGTG	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	280, 474
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	2 cut(s)	199, 395
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	2 cut(s)	199, 395
Psp6I	CCWGG	1 cut(s)	448
PspEI	GGTNACC	2 cut(s)	34, 103
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	454
RsaI	GTAC	2 cut(s)	320, 446
RsaNI	GTAC	2 cut(s)	319, 445
RseI	CAYNNNNRTG	2 cut(s)	29, 170
SaqAI	TTAA	1 cut(s)	544
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	465
SchI	GAGTC	2 cut(s)	199, 395
ScrFI	CCNGG	4 cut(s)	44, 101, 342, 450
SduI	GDGCHC	2 cut(s)	309, 330
SfaNI	GCATC	2 cut(s)	383, 510
SfoI	GGCGCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	2 cut(s)	29, 170
SmlI	CTYRAG	2 cut(s)	48, 408
SmoI	CTYRAG	2 cut(s)	48, 408
Sse9I	AATT	2 cut(s)	239, 293
SsiI	CCGC	5 cut(s)	27, 90, 109, 268, 405
SspDI	GGCGCC	1 cut(s)	452
StyD4I	CCNGG	4 cut(s)	42, 99, 340, 448
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	297, 477
TasI	AATT	2 cut(s)	239, 293
TfiI	GAWTC	2 cut(s)	280, 474
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	103, 230
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	2 cut(s)	103, 230
TspDTI	ATGAA	3 cut(s)	182, 448, 499
TspGWI	ACGGA	3 cut(s)	162, 324, 345
XagI	CCTNNNNNAGG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.