Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Reverse (-)

19903870 .. 19905114

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCCTCCTCCATGTTCTCATCATCGGCTGCCGCAGTCGCCACCGCCGCCTCCCCGGCACAAGCCAGCATGGTTGCGCCATTCACTGGCCTCAAGTCTGCCTCAGCTTTCCCCATCACCAGAAAGACCAACAGTGATATTACCTCACTCCCAAGCAATGGCGGAAGAGTGCAATGCATGCAGGTGTGGCCTCCAGTTGGTTTGAAGAAGTTCGAGACGCTGTCCTACCTTCCACCGCTTACTTCCGAGTCCTTGGCCAAGGAAGTTGATTTCCTTCTCCGCAACAAATGGGTTCCCTGCTTGGAATTTGAGTTGGAGAAAGGATTCGTGTACCGTGAGAACCACAAGTCACCGGGATACTACGACGGCCGCTACTGGACCATGTGGAAGTTGCCCATGTTCGGATGCACCGACGCTTCCCAAGTGTTGAAGGAGCTCGAGGAGGCCAAGAAGGCTTATCCAAATGCTTTCATCCGTATCATCGGATTCGACAATGTCCGTCAAGTTCAGTGCATCAGTTTCATCGCCTACAAGCCTGCAGGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

183

Amino Acids

20.23

Weight (kDa)

9.01

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 46	3.5e-18	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	71 - 179	1.4e-36	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AccB7I	CCANNNNNTGG	2 cut(s)	86, 158
AciI	CCGC	7 cut(s)	33, 45, 48, 162, 236, 280, 370
AcoI	YGGCCR	2 cut(s)	255, 367
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	4 cut(s)	86, 158, 197, 401
AgsI	TTSAA	2 cut(s)	205, 430
AluBI	AGCT	2 cut(s)	107, 436
AluI	AGCT	2 cut(s)	107, 436
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	6 cut(s)	3, 88, 188, 255, 367, 444
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	305
Asp700I	GAANNNNTTC	2 cut(s)	209, 323
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	2 cut(s)	56, 354
AsuHPI	GGTGA	2 cut(s)	109, 342
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	438
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	382
BciVI	GTATCC	1 cut(s)	350
BcnI	CCSGG	2 cut(s)	56, 354
BcoDI	GTCTC	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	350
BglI	GCCNNNNNGGC	2 cut(s)	56, 452
BisI	GCNGC	4 cut(s)	30, 33, 48, 370
BlsI	GCNGC	4 cut(s)	31, 34, 49, 371
Bme1390I	CCNGG	2 cut(s)	56, 354
Bme18I	GGWCC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	56, 354
BmsI	GCATC	2 cut(s)	395, 522
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	56, 354
BsaJI	CCNNGG	3 cut(s)	54, 252, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 158, 197, 401
Bse1I	ACTGG	3 cut(s)	91, 194, 380
Bse3DI	GCAATG	2 cut(s)	163, 179
BseDI	CCNNGG	3 cut(s)	54, 252, 258
BseGI	GGATG	2 cut(s)	410, 471
BseLI	CCNNNNNNNGG	4 cut(s)	86, 158, 197, 401
BseMI	GCAATG	2 cut(s)	163, 179
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	3 cut(s)	91, 194, 380
BseRI	GAGGAG	1 cut(s)	455
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	6 cut(s)	5, 90, 190, 257, 369, 446
BsiEI	CGRYCG	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	56, 353
BslI	CCNNNNNNNGG	4 cut(s)	86, 158, 197, 401
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	6 cut(s)	5, 90, 190, 257, 369, 446
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	438
BspACI	CCGC	7 cut(s)	33, 45, 48, 162, 236, 280, 370
BspANI	GGCC	6 cut(s)	5, 90, 190, 257, 369, 446
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	163, 179
BsrI	ACTGG	3 cut(s)	91, 194, 380
BssECI	CCNNGG	3 cut(s)	54, 252, 258
BssT1I	CCWWGG	2 cut(s)	252, 258
Bst4CI	ACNGT	2 cut(s)	134, 335
Bst6I	CTCTTC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	4 cut(s)	67, 179, 537, 541
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	410, 471
BstHHI	GCGC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 47, 56, 178, 187, 452
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	54, 352
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	6 cut(s)	5, 90, 190, 257, 369, 446
BtgZI	GCGATG	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	410, 471
BtsIMutI	CAGTG	3 cut(s)	84, 139, 515
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	4 cut(s)	67, 179, 537, 541
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	2 cut(s)	226, 422
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	5 cut(s)	13, 70, 178, 382, 397
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	103
EaeI	YGGCCR	2 cut(s)	255, 367
EagI	CGGCCG	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	436
EclXI	CGGCCG	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	252, 258
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	378
Eco52I	CGGCCG	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	252, 258
EcoT22I	ATGCAT	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	2 cut(s)	252, 258
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	5 cut(s)	16, 73, 181, 385, 400
FaiI	YATR	5 cut(s)	14, 71, 179, 383, 398
FatI	CATG	5 cut(s)	12, 69, 177, 381, 396
Fnu4HI	GCNGC	4 cut(s)	30, 33, 48, 370
FokI	GGATG	2 cut(s)	417, 458
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	4 cut(s)	30, 33, 48, 370
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	4 cut(s)	30, 33, 48, 370
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	6 cut(s)	5, 90, 190, 257, 369, 446
HapII	CCGG	2 cut(s)	56, 353
HgaI	GACGC	2 cut(s)	226, 422
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	5 cut(s)	16, 73, 181, 385, 400
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	3 cut(s)	248, 324, 486
HpaII	CCGG	2 cut(s)	56, 353
HphI	GGTGA	2 cut(s)	109, 342
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	3 cut(s)	247, 404, 485
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	2 cut(s)	368, 416
HpyAV	CCTTC	4 cut(s)	239, 284, 424, 445
HpyCH4III	ACNGT	2 cut(s)	134, 335
HpyCH4V	TGCA	6 cut(s)	172, 177, 181, 408, 513, 539
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 47, 56, 178, 187, 452
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	5 cut(s)	16, 73, 181, 385, 400
HspAI	GCGC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	395, 522
MaeIII	GTNAC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	177, 217
MhlI	GDGCHC	1 cut(s)	438
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	9 cut(s)	16, 19, 61, 101, 112, 154, 201, 433, 436
Mox20I	TGGCCA	1 cut(s)	257
Mph1103I	ATGCAT	1 cut(s)	179
MroXI	GAANNNNTTC	2 cut(s)	209, 323
MscI	TGGCCA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	2 cut(s)	56, 353
MspR9I	CCNGG	2 cut(s)	56, 354
MwoI	GCNNNNNNNGC	6 cut(s)	38, 47, 56, 178, 187, 452
NciI	CCSGG	2 cut(s)	56, 354
NlaIII	CATG	5 cut(s)	16, 73, 181, 385, 400
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	348
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	437
PaqCI	CACCTGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PdmI	GAANNNNTTC	2 cut(s)	209, 323
PfeI	GAWTC	2 cut(s)	324, 486
PflFI	GACNNNGTC	2 cut(s)	220, 494
PflMI	CCANNNNNTGG	2 cut(s)	86, 158
PkrI	GCNGC	4 cut(s)	31, 34, 49, 371
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	378
PspXI	VCTCGAGB	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	541
PsyI	GACNNNGTC	2 cut(s)	220, 494
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	438
SatI	GCNGC	4 cut(s)	30, 33, 48, 370
Sau96I	GGNCC	1 cut(s)	378
SbfI	CCTGCAGG	1 cut(s)	541
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	56, 354
SdaI	CCTGCAGG	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	5 cut(s)	109, 146, 186, 231, 438
SfaNI	GCATC	2 cut(s)	395, 522
SfcI	CTRYAG	1 cut(s)	537
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	378
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	92, 437
SmoI	CTYRAG	2 cut(s)	92, 437
SphI	GCATGC	1 cut(s)	181
Sse8387I	CCTGCAGG	1 cut(s)	541
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	7 cut(s)	33, 45, 48, 162, 236, 280, 370
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	54, 352
StyI	CCWWGG	2 cut(s)	252, 258
TaaI	ACNGT	2 cut(s)	134, 335
TaqI	TCGA	3 cut(s)	213, 438, 489
TasI	AATT	1 cut(s)	305
TauI	GCSGC	3 cut(s)	35, 50, 372
TfiI	GAWTC	2 cut(s)	324, 486
TscAI	CASTG	3 cut(s)	91, 139, 515
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	460, 511
TspGWI	ACGGA	2 cut(s)	464, 488
TspRI	CASTG	3 cut(s)	91, 139, 515
Tth111I	GACNNNGTC	2 cut(s)	220, 494
Van91I	CCANNNNNTGG	2 cut(s)	86, 158
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	209, 323
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.