Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Reverse (-)

17301526 .. 17305019

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTTCCTCCATGATTTCCTCTGCTACTGTGTCTACAGTTTATGCCGGCCGTGCTGCCCCGACTCAAGCCAGCATGGTTGCTCCTGGCCTCAAGTCGTCTTCAGCTTTCCCTATCACCAGAAAGAACAACGATATTACCTCTATTGCAAGCAATGGAGGAAGAGTGCAATGCATAGTGGTGCAGTCTCCAGTTGGATTGAAGAAGTTCGAGACCCTCAACCTTCCTCCTCTCTCTCCCGAGTCCTTGGCCAAGGAGGTTGACTACCTCCTCCGCAACAACTGGGTTCCCTGCTTGGAATTTGAGTTGGAGACTGGATTTGTGTACCGTGAGAACCACAAATCCCCAGGATACTATGATGGAAGCTACTGGAAGCTGCCCATATTGGGATGCACCGACTCTTCTCAGGTGTTGAAGAAGCTGGAGGAGGCCAAGAAGGCCTATCCCAACTCCTTCATCCGTATCATCGGATTCGACAACGTGCGCCAAGTGCAGTGCATCAGTTTCCTCGCCTACAAGCCTCCAGGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

178

Amino Acids

19.48

Weight (kDa)

9.01

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 44	3.5e-16	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	75 - 174	1.8e-25	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	1 cut(s)	274
AcoI	YGGCCR	2 cut(s)	49, 249
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	202, 415
AjnI	CCWGG	3 cut(s)	85, 346, 523
AloI	GAACNNNNNNTCC	2 cut(s)	326, 358
AluBI	AGCT	4 cut(s)	107, 366, 376, 421
AluI	AGCT	4 cut(s)	107, 366, 376, 421
Alw26I	GTCTC	3 cut(s)	192, 206, 305
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	5 cut(s)	49, 88, 249, 429, 438
ApeKI	GCWGC	2 cut(s)	56, 376
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	43, 363
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	3 cut(s)	87, 348, 525
BciVI	GTATCC	1 cut(s)	344
BcoDI	GTCTC	3 cut(s)	192, 206, 305
BfmI	CTRYAG	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	344
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	2 cut(s)	57, 377
BlsI	GCNGC	2 cut(s)	58, 378
Bme1390I	CCNGG	3 cut(s)	87, 348, 525
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	3 cut(s)	87, 348, 525
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	380, 507
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	3 cut(s)	174, 443, 507
BpuEI	CTTGAG	2 cut(s)	51, 77
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	246, 252, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	4 cut(s)	191, 287, 319, 374
Bse3DI	GCAATG	2 cut(s)	160, 176
BseBI	CCWGG	3 cut(s)	87, 348, 525
BseDI	CCNNGG	3 cut(s)	246, 252, 346
BseGI	GGATG	2 cut(s)	395, 456
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	2 cut(s)	160, 176
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	4 cut(s)	191, 287, 319, 374
BseRI	GAGGAG	3 cut(s)	219, 260, 440
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	43, 363
BsgI	GTGCAG	2 cut(s)	203, 512
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	5 cut(s)	51, 90, 251, 431, 440
BsiEI	CGRYCG	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	3 cut(s)	192, 206, 305
BsnI	GGCC	5 cut(s)	51, 90, 251, 431, 440
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	239
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	5 cut(s)	51, 90, 251, 431, 440
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	160, 176
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	4 cut(s)	191, 287, 319, 374
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	246, 252, 346
BssT1I	CCWWGG	2 cut(s)	246, 252
Bst2UI	CCWGG	3 cut(s)	87, 348, 525
Bst4CI	ACNGT	3 cut(s)	31, 40, 329
Bst6I	CTCTTC	2 cut(s)	157, 406
BstC8I	GCNNGC	3 cut(s)	49, 73, 151
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	395, 456
BstHHI	GCGC	1 cut(s)	486
BstMAI	GTCTC	3 cut(s)	192, 206, 305
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 437, 490
BstNI	CCWGG	3 cut(s)	87, 348, 525
BstSCI	CCNGG	3 cut(s)	85, 346, 523
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	43, 363
BstV2I	GAAGAC	1 cut(s)	93
BstZI	CGGCCG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	5 cut(s)	51, 90, 251, 431, 440
BtsCI	GGATG	2 cut(s)	395, 456
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	3 cut(s)	49, 73, 151
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	13, 76
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	49, 249
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	157, 406
EarI	CTCTTC	2 cut(s)	157, 406
EclXI	CGGCCG	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	246, 252
Eco147I	AGGCCT	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	206
Eco52I	CGGCCG	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	85, 346, 523
EcoT14I	CCWWGG	2 cut(s)	246, 252
EcoT22I	ATGCAT	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	246, 252
FaeI	CATG	2 cut(s)	16, 79
FaiI	YATR	6 cut(s)	14, 45, 77, 176, 357, 383
FatI	CATG	2 cut(s)	12, 75
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	57, 377
FokI	GGATG	2 cut(s)	402, 443
Fsp4HI	GCNGC	2 cut(s)	57, 377
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	2 cut(s)	57, 377
GsuI	CTGGAG	3 cut(s)	174, 443, 507
HaeIII	GGCC	5 cut(s)	51, 90, 251, 431, 440
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	16, 79
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	4 cut(s)	64, 242, 398, 471
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	36, 262, 325
Hpy188I	TCNGA	1 cut(s)	470
Hpy188III	TCNNGA	2 cut(s)	211, 239
Hpy8I	GTNNAC	3 cut(s)	36, 262, 325
HpyAV	CCTTC	3 cut(s)	233, 430, 463
HpyCH4III	ACNGT	3 cut(s)	31, 40, 329
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	7 cut(s)	149, 169, 174, 184, 393, 493, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 437, 490
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	2 cut(s)	16, 79
HspAI	GCGC	1 cut(s)	484
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	43, 363
LweI	GCATC	2 cut(s)	380, 507
MaeII	ACGT	1 cut(s)	480
MboII	GAAGA	5 cut(s)	93, 174, 214, 393, 427
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	3 cut(s)	58, 251, 392
MmeI	TCCRAC	2 cut(s)	175, 288
Mox20I	TGGCCA	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	3 cut(s)	87, 348, 525
MvaI	CCWGG	3 cut(s)	87, 348, 525
MwoI	GCNNNNNNNGC	3 cut(s)	53, 437, 490
NaeI	GCCGGC	1 cut(s)	49
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	16, 79
NlaIV	GGNNCC	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	440
PdiI	GCCGGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	58, 378
PleI	GAGTC	3 cut(s)	58, 250, 392
PpsI	GAGTC	3 cut(s)	58, 250, 392
Psp6I	CCWGG	3 cut(s)	85, 346, 523
PspGI	CCWGG	3 cut(s)	85, 346, 523
PspN4I	GGNNCC	1 cut(s)	288
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	179
SatI	GCNGC	2 cut(s)	57, 377
SchI	GAGTC	3 cut(s)	58, 251, 392
ScrFI	CCNGG	3 cut(s)	87, 348, 525
SfaNI	GCATC	2 cut(s)	380, 507
SfcI	CTRYAG	1 cut(s)	36
SfiI	GGCCNNNNNGGCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	66, 92
SmoI	CTYRAG	2 cut(s)	66, 92
Sse9I	AATT	1 cut(s)	299
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	1 cut(s)	274
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	3 cut(s)	85, 346, 523
StyI	CCWWGG	2 cut(s)	246, 252
TaaI	ACNGT	3 cut(s)	31, 40, 329
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	2 cut(s)	210, 474
TasI	AATT	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	471
TscAI	CASTG	1 cut(s)	500
TseI	GCWGC	2 cut(s)	56, 376
TspDTI	ATGAA	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.