Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8187892.1

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Reverse (-)

12 .. 476

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8187892.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggcctcctccatgttctcatcgtctgccgcagttgccaccgccgcctccccggcacaagccagcatggtcgcaccattcaccggcctcaagtctgccgcagctttccccatcaccagaaagaccaacagtgacattacctcactcccaagcaatggcggaagagtgcaatgcatgaaggtgtggcctacagttggtatgaagaagttcgagactctgtcctaccttccaccactttctcccgagtccttggccaaggaagttgattaccttctccgcaaaggatgggttccctgcttggaatttgagttggaggttaatattacttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

110

Amino Acids

11.76

Weight (kDa)

8.52

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	6 cut(s)	30, 42, 45, 99, 159, 277
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	83, 155, 194
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	4 cut(s)	3, 85, 185, 252
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	73, 106
AvaI	CYCGRG	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	119, 279
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	189
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	30, 45, 99, 102
BlsI	GCNGC	4 cut(s)	31, 46, 100, 103
Bme1390I	CCNGG	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	51, 249, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 155, 194
Bse118I	RCCGGY	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	160, 176
BseDI	CCNNGG	3 cut(s)	51, 249, 255
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	3 cut(s)	83, 155, 194
BseMI	GCAATG	2 cut(s)	160, 176
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	4 cut(s)	5, 87, 187, 254
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	53, 84
BslI	CCNNNNNNNGG	3 cut(s)	83, 155, 194
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	5, 87, 187, 254
BsoBI	CYCGRG	1 cut(s)	242
BspACI	CCGC	6 cut(s)	30, 42, 45, 99, 159, 277
BspANI	GGCC	4 cut(s)	5, 87, 187, 254
BspLI	GGNNCC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	160, 176
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	51, 249, 255
BssT1I	CCWWGG	2 cut(s)	249, 255
Bst4CI	ACNGT	2 cut(s)	131, 193
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	290
BstMAI	GTCTC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	5, 87, 187, 254
BtsCI	GGATG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	83
CviAII	CATG	3 cut(s)	13, 67, 175
CviJI	RGCY	6 cut(s)	5, 62, 87, 104, 187, 254
CviKI_1	RGCY	6 cut(s)	5, 62, 87, 104, 187, 254
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	249, 255
Eco88I	CYCGRG	1 cut(s)	242
EcoT14I	CCWWGG	2 cut(s)	249, 255
EcoT22I	ATGCAT	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	249, 255
FaeI	CATG	3 cut(s)	16, 70, 178
FaiI	YATR	4 cut(s)	14, 68, 176, 200
FatI	CATG	3 cut(s)	12, 66, 174
Fnu4HI	GCNGC	4 cut(s)	30, 45, 99, 102
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	4 cut(s)	30, 45, 99, 102
GluI	GCNGC	4 cut(s)	30, 45, 99, 102
HaeIII	GGCC	4 cut(s)	5, 87, 187, 254
HapII	CCGG	2 cut(s)	53, 84
Hin1II	CATG	3 cut(s)	16, 70, 178
HinfI	GANTC	2 cut(s)	214, 245
HpaII	CCGG	2 cut(s)	53, 84
HphI	GGTGA	2 cut(s)	73, 106
Hpy188III	TCNNGA	2 cut(s)	211, 242
HpyAV	CCTTC	3 cut(s)	172, 236, 281
HpyCH4III	ACNGT	2 cut(s)	131, 193
HpyCH4V	TGCA	2 cut(s)	169, 174
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
Hsp92II	CATG	3 cut(s)	16, 70, 178
LpnPI	CCDG	5 cut(s)	66, 76, 97, 130, 307
Lsp1109I	GCAGC	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	131
MboII	GAAGA	2 cut(s)	174, 214
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	208, 254
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	6 cut(s)	16, 19, 58, 98, 151, 307
Mox20I	TGGCCA	1 cut(s)	254
Mph1103I	ATGCAT	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	2 cut(s)	53, 84
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	3 cut(s)	16, 70, 178
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	206
PflFI	GACNNNGTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	31, 46, 100, 103
PleI	GAGTC	2 cut(s)	208, 253
PpsI	GAGTC	2 cut(s)	208, 253
PspN4I	GGNNCC	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	30, 45, 99, 102
SchI	GAGTC	2 cut(s)	208, 254
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	6 cut(s)	106, 143, 183, 228, 273, 318
SfcI	CTRYAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	6 cut(s)	30, 42, 45, 99, 159, 277
SspI	AATATT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	249, 255
TaaI	ACNGT	2 cut(s)	131, 193
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	302
TauI	GCSGC	3 cut(s)	32, 47, 101
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	191, 215
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.