RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430 |
| fragaria_vesca | FvH4_4g27330 FvH4_6g26030 |
| malus_domestica | MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1 |
| prunus_persica | Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1 |
| pyrus_communis | pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720 |
| rosa_chinensis | RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151 |
| rosa_laevigata | RLG00000006615 RLG00000018888 |
| rosa_multiflora | Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037 |
| rosa_roxburghii | Rroxscaffold_2G00117430 Rroxscaffold_5G00376370 |
| rosa_rugosa | Rorug02G0261500 Rorug04G0282600 |
| rosa_samantha | Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700 |
| rosa_wichuraiana | Rw2G025780 Rw4G029500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 166 |
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 191 |
| AccI | GTMKAC | 1 cut(s) | 324 |
| AciI | CCGC | 2 cut(s) | 102, 274 |
| AclWI | GGATC | 1 cut(s) | 479 |
| AcoI | YGGCCR | 2 cut(s) | 182, 249 |
| AcsI | RAATTY | 1 cut(s) | 299 |
| AfaI | GTAC | 3 cut(s) | 266, 353, 501 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 52, 58, 83, 84, 191, 395, 468 |
| AgsI | TTSAA | 2 cut(s) | 82, 199 |
| AjnI | CCWGG | 1 cut(s) | 414 |
| AluBI | AGCT | 3 cut(s) | 385, 430, 537 |
| AluI | AGCT | 3 cut(s) | 385, 430, 537 |
| Alw21I | GWGCWC | 3 cut(s) | 315, 336, 432 |
| Alw26I | GTCTC | 1 cut(s) | 203 |
| AlwI | GGATC | 1 cut(s) | 479 |
| Ama87I | CYCGRG | 2 cut(s) | 347, 455 |
| AoxI | GGCC | 6 cut(s) | 96, 123, 182, 249, 438, 459 |
| ApoI | RAATTY | 1 cut(s) | 299 |
| AsuC2I | CCSGG | 3 cut(s) | 53, 348, 349 |
| AsuNHI | GCTAGC | 1 cut(s) | 62 |
| AvaI | CYCGRG | 2 cut(s) | 347, 455 |
| BaeGI | GKGCMC | 1 cut(s) | 52 |
| BalI | TGGCCA | 2 cut(s) | 184, 251 |
| BanII | GRGCYC | 2 cut(s) | 90, 432 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 252, 284 |
| BbsI | GAAGAC | 1 cut(s) | 452 |
| Bbv12I | GWGCWC | 3 cut(s) | 315, 336, 432 |
| BbvCI | CCTCAGC | 1 cut(s) | 22 |
| BceAI | ACGGC | 1 cut(s) | 352 |
| BciT130I | CCWGG | 1 cut(s) | 416 |
| BcnI | CCSGG | 3 cut(s) | 53, 348, 349 |
| BcoDI | GTCTC | 1 cut(s) | 203 |
| BfaI | CTAG | 1 cut(s) | 63 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BlpI | GCTNAGC | 1 cut(s) | 426 |
| Bme1390I | CCNGG | 4 cut(s) | 53, 348, 349, 416 |
| BmeT110I | CYCGRG | 2 cut(s) | 347, 455 |
| BmiI | GGNNCC | 1 cut(s) | 288 |
| BmrFI | CCNGG | 4 cut(s) | 53, 348, 349, 416 |
| BmsI | GCATC | 1 cut(s) | 389 |
| BmtI | GCTAGC | 1 cut(s) | 66 |
| BpiI | GAAGAC | 1 cut(s) | 452 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 200, 232 |
| Bpu10I | CCTNAGC | 1 cut(s) | 22 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 3 cut(s) | 53, 348, 349 |
| BsaI | GGTCTC | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 6 cut(s) | 51, 252, 346, 347, 414, 456 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 52, 58, 83, 84, 191, 395, 468 |
| Bse1I | ACTGG | 3 cut(s) | 166, 188, 374 |
| Bse3DI | GCAATG | 1 cut(s) | 516 |
| BseBI | CCWGG | 1 cut(s) | 416 |
| BseDI | CCNNGG | 6 cut(s) | 51, 252, 346, 347, 414, 456 |
| BseGI | GGATG | 1 cut(s) | 404 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 52, 58, 83, 84, 191, 395, 468 |
| BseMI | GCAATG | 1 cut(s) | 516 |
| BseMII | CTCAG | 3 cut(s) | 36, 51, 417 |
| BseNI | ACTGG | 3 cut(s) | 166, 188, 374 |
| BseRI | GAGGAG | 1 cut(s) | 219 |
| BseSI | GKGCMC | 1 cut(s) | 52 |
| BshFI | GGCC | 6 cut(s) | 98, 125, 184, 251, 440, 461 |
| BsiHKAI | GWGCWC | 3 cut(s) | 315, 336, 432 |
| BsiHKCI | CYCGRG | 2 cut(s) | 347, 455 |
| BsiSI | CCGG | 2 cut(s) | 53, 348 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 52, 58, 83, 84, 191, 395, 468 |
| BsmAI | GTCTC | 1 cut(s) | 203 |
| BsnI | GGCC | 6 cut(s) | 98, 125, 184, 251, 440, 461 |
| Bso31I | GGTCTC | 1 cut(s) | 203 |
| BsoBI | CYCGRG | 2 cut(s) | 347, 455 |
| Bsp1286I | GDGCHC | 5 cut(s) | 52, 90, 315, 336, 432 |
| Bsp143I | GATC | 1 cut(s) | 471 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 426 |
| BspACI | CCGC | 2 cut(s) | 102, 274 |
| BspANI | GGCC | 6 cut(s) | 98, 125, 184, 251, 440, 461 |
| BspCNI | CTCAG | 3 cut(s) | 35, 50, 418 |
| BspLI | GGNNCC | 1 cut(s) | 288 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspOI | GCTAGC | 1 cut(s) | 66 |
| BspPI | GGATC | 1 cut(s) | 479 |
| BspTNI | GGTCTC | 1 cut(s) | 203 |
| BsrDI | GCAATG | 1 cut(s) | 516 |
| BsrI | ACTGG | 3 cut(s) | 166, 188, 374 |
| BssECI | CCNNGG | 6 cut(s) | 51, 252, 346, 347, 414, 456 |
| BssMI | GATC | 1 cut(s) | 471 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 1 cut(s) | 416 |
| Bst4CI | ACNGT | 6 cut(s) | 31, 47, 155, 317, 329, 504 |
| Bst6I | CTCTTC | 2 cut(s) | 154, 429 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 5 cut(s) | 64, 148, 173, 531, 535 |
| BstDEI | CTNAG | 3 cut(s) | 22, 37, 426 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 466 |
| BstF5I | GGATG | 1 cut(s) | 404 |
| BstKTI | GATC | 1 cut(s) | 474 |
| BstMAI | GTCTC | 1 cut(s) | 203 |
| BstMBI | GATC | 1 cut(s) | 471 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 32, 181 |
| BstNI | CCWGG | 1 cut(s) | 416 |
| BstNSI | RCATGY | 1 cut(s) | 175 |
| BstSCI | CCNGG | 4 cut(s) | 51, 346, 347, 414 |
| BstSLI | GKGCMC | 1 cut(s) | 52 |
| BstV2I | GAAGAC | 1 cut(s) | 452 |
| BsuRI | GGCC | 6 cut(s) | 98, 125, 184, 251, 440, 461 |
| BtsCI | GGATG | 1 cut(s) | 404 |
| BtsIMutI | CAGTG | 2 cut(s) | 173, 509 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 5 cut(s) | 64, 148, 173, 531, 535 |
| Cfr9I | CCCGGG | 1 cut(s) | 347 |
| CseI | GACGC | 1 cut(s) | 416 |
| Csp6I | GTAC | 3 cut(s) | 265, 352, 500 |
| CviAII | CATG | 3 cut(s) | 67, 172, 391 |
| CviQI | GTAC | 3 cut(s) | 265, 352, 500 |
| DdeI | CTNAG | 3 cut(s) | 22, 37, 426 |
| DpnI | GATC | 1 cut(s) | 473 |
| DpnII | GATC | 1 cut(s) | 471 |
| EaeI | YGGCCR | 2 cut(s) | 182, 249 |
| Eam1104I | CTCTTC | 2 cut(s) | 154, 429 |
| EarI | CTCTTC | 2 cut(s) | 154, 429 |
| EciI | GGCGGA | 1 cut(s) | 91 |
| Ecl136II | GAGCTC | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco147I | AGGCCT | 1 cut(s) | 461 |
| Eco24I | GRGCYC | 2 cut(s) | 90, 432 |
| Eco31I | GGTCTC | 1 cut(s) | 203 |
| Eco53kI | GAGCTC | 1 cut(s) | 430 |
| Eco88I | CYCGRG | 2 cut(s) | 347, 455 |
| EcoICRI | GAGCTC | 1 cut(s) | 430 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 466 |
| EcoRII | CCWGG | 1 cut(s) | 414 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 2 cut(s) | 90, 432 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaeI | CATG | 3 cut(s) | 70, 175, 394 |
| FaiI | YATR | 5 cut(s) | 14, 68, 173, 357, 392 |
| FatI | CATG | 3 cut(s) | 66, 171, 390 |
| FblI | GTMKAC | 1 cut(s) | 324 |
| FokI | GGATG | 1 cut(s) | 411 |
| FriOI | GRGCYC | 2 cut(s) | 90, 432 |
| FspBI | CTAG | 1 cut(s) | 63 |
| HaeIII | GGCC | 6 cut(s) | 98, 125, 184, 251, 440, 461 |
| HapII | CCGG | 2 cut(s) | 53, 348 |
| HgaI | GACGC | 1 cut(s) | 416 |
| Hin1II | CATG | 3 cut(s) | 70, 175, 394 |
| HincII | GTYRAC | 1 cut(s) | 43 |
| HindII | GTYRAC | 1 cut(s) | 43 |
| HinfI | GANTC | 4 cut(s) | 115, 162, 242, 480 |
| HpaI | GTTAAC | 1 cut(s) | 43 |
| HpaII | CCGG | 2 cut(s) | 53, 348 |
| Hpy166II | GTNNAC | 2 cut(s) | 43, 325 |
| Hpy188I | TCNGA | 2 cut(s) | 398, 479 |
| Hpy188III | TCNNGA | 1 cut(s) | 469 |
| Hpy8I | GTNNAC | 2 cut(s) | 43, 325 |
| Hpy99I | CGWCG | 1 cut(s) | 410 |
| HpyAV | CCTTC | 5 cut(s) | 88, 115, 233, 278, 472 |
| HpyCH4III | ACNGT | 6 cut(s) | 31, 47, 155, 317, 329, 504 |
| HpyCH4IV | ACGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 171, 175, 402 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 32, 181 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 37, 426 |
| HpySE526I | ACGT | 1 cut(s) | 364 |
| Hsp92II | CATG | 3 cut(s) | 70, 175, 394 |
| KspAI | GTTAAC | 1 cut(s) | 43 |
| Kzo9I | GATC | 1 cut(s) | 471 |
| LmnI | GCTCC | 2 cut(s) | 310, 390 |
| LweI | GCATC | 1 cut(s) | 389 |
| MaeI | CTAG | 1 cut(s) | 63 |
| MaeII | ACGT | 1 cut(s) | 364 |
| MaeIII | GTNAC | 2 cut(s) | 112, 365 |
| MalI | GATC | 1 cut(s) | 473 |
| MboI | GATC | 1 cut(s) | 471 |
| MboII | GAAGA | 4 cut(s) | 171, 211, 446, 457 |
| MhlI | GDGCHC | 5 cut(s) | 52, 90, 315, 336, 432 |
| MlsI | TGGCCA | 2 cut(s) | 184, 251 |
| MluCI | AATT | 2 cut(s) | 299, 340 |
| MluNI | TGGCCA | 2 cut(s) | 184, 251 |
| MlyI | GAGTC | 3 cut(s) | 109, 171, 251 |
| MmeI | TCCRAC | 1 cut(s) | 288 |
| MnlI | CCTC | 9 cut(s) | 19, 31, 46, 109, 224, 237, 240, 430, 451 |
| Mox20I | TGGCCA | 2 cut(s) | 184, 251 |
| MscI | TGGCCA | 2 cut(s) | 184, 251 |
| MseI | TTAA | 1 cut(s) | 42 |
| MslI | CAYNNNNRTG | 1 cut(s) | 176 |
| Msp20I | TGGCCA | 2 cut(s) | 184, 251 |
| MspI | CCGG | 2 cut(s) | 53, 348 |
| MspR9I | CCNGG | 4 cut(s) | 53, 348, 349, 416 |
| MvaI | CCWGG | 1 cut(s) | 416 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 32, 181 |
| NciI | CCSGG | 3 cut(s) | 53, 348, 349 |
| NdeII | GATC | 1 cut(s) | 471 |
| NheI | GCTAGC | 1 cut(s) | 62 |
| NlaIII | CATG | 3 cut(s) | 70, 175, 394 |
| NlaIV | GGNNCC | 1 cut(s) | 288 |
| NmuCI | GTSAC | 1 cut(s) | 112 |
| NspI | RCATGY | 1 cut(s) | 175 |
| PaeI | GCATGC | 1 cut(s) | 175 |
| PaqCI | CACCTGC | 1 cut(s) | 166 |
| PceI | AGGCCT | 1 cut(s) | 461 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 480 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 191 |
| PleI | GAGTC | 3 cut(s) | 109, 170, 250 |
| PpsI | GAGTC | 3 cut(s) | 109, 170, 250 |
| Psp124BI | GAGCTC | 1 cut(s) | 432 |
| Psp6I | CCWGG | 1 cut(s) | 414 |
| PspGI | CCWGG | 1 cut(s) | 414 |
| PspN4I | GGNNCC | 1 cut(s) | 288 |
| RsaI | GTAC | 3 cut(s) | 266, 353, 501 |
| RsaNI | GTAC | 3 cut(s) | 265, 352, 500 |
| RseI | CAYNNNNRTG | 1 cut(s) | 176 |
| SacI | GAGCTC | 1 cut(s) | 432 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| Sau3AI | GATC | 1 cut(s) | 471 |
| SchI | GAGTC | 3 cut(s) | 109, 171, 251 |
| ScrFI | CCNGG | 4 cut(s) | 53, 348, 349, 416 |
| SduI | GDGCHC | 5 cut(s) | 52, 90, 315, 336, 432 |
| SetI | ASST | 8 cut(s) | 180, 225, 270, 367, 387, 420, 432, 539 |
| SfaNI | GCATC | 1 cut(s) | 389 |
| SmaI | CCCGGG | 1 cut(s) | 349 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 176 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| SphI | GCATGC | 1 cut(s) | 175 |
| Sse9I | AATT | 2 cut(s) | 299, 340 |
| SseBI | AGGCCT | 1 cut(s) | 461 |
| SsiI | CCGC | 2 cut(s) | 102, 274 |
| SspMI | CTAG | 1 cut(s) | 63 |
| SstI | GAGCTC | 1 cut(s) | 432 |
| StuI | AGGCCT | 1 cut(s) | 461 |
| StyD4I | CCNGG | 4 cut(s) | 51, 346, 347, 414 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 6 cut(s) | 31, 47, 155, 317, 329, 504 |
| TaiI | ACGT | 1 cut(s) | 367 |
| TaqI | TCGA | 3 cut(s) | 240, 432, 483 |
| TasI | AATT | 2 cut(s) | 299, 340 |
| TatI | WGTACW | 1 cut(s) | 499 |
| TfiI | GAWTC | 1 cut(s) | 480 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| TscAI | CASTG | 2 cut(s) | 173, 509 |
| TseFI | GTSAC | 1 cut(s) | 112 |
| Tsp45I | GTSAC | 1 cut(s) | 112 |
| TspDTI | ATGAA | 2 cut(s) | 454, 505 |
| TspGWI | ACGGA | 1 cut(s) | 375 |
| TspMI | CCCGGG | 1 cut(s) | 347 |
| TspRI | CASTG | 2 cut(s) | 173, 509 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 191 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 466 |
| XapI | RAATTY | 1 cut(s) | 299 |
| XceI | RCATGY | 1 cut(s) | 175 |
| XmaI | CCCGGG | 1 cut(s) | 347 |
| XmiI | GTMKAC | 1 cut(s) | 324 |
| XspI | CTAG | 1 cut(s) | 63 |