RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430 |
| fragaria_vesca | FvH4_4g27330 FvH4_6g26030 |
| malus_domestica | MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1 |
| prunus_persica | Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1 |
| pyrus_communis | pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720 |
| rosa_chinensis | RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151 |
| rosa_laevigata | RLG00000006615 RLG00000018888 |
| rosa_multiflora | Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037 |
| rosa_roxburghii | Rroxscaffold_2G00117430 Rroxscaffold_5G00376370 |
| rosa_rugosa | Rorug02G0261500 Rorug04G0282600 |
| rosa_samantha | Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700 |
| rosa_wichuraiana | Rw2G025780 Rw4G029500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 122 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 92 |
| AccI | GTMKAC | 1 cut(s) | 270 |
| AciI | CCGC | 2 cut(s) | 57, 283 |
| AclI | AACGTT | 1 cut(s) | 498 |
| AcoI | YGGCCR | 1 cut(s) | 258 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AcuI | CTGAAG | 2 cut(s) | 6, 227 |
| AcyI | GRCGYC | 1 cut(s) | 123 |
| AfaI | GTAC | 3 cut(s) | 335, 362, 377 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 92, 200, 404 |
| AgsI | TTSAA | 1 cut(s) | 433 |
| AjnI | CCWGG | 1 cut(s) | 355 |
| AluBI | AGCT | 6 cut(s) | 26, 71, 75, 113, 394, 439 |
| AluI | AGCT | 6 cut(s) | 26, 71, 75, 113, 394, 439 |
| Alw21I | GWGCWC | 1 cut(s) | 441 |
| Alw26I | GTCTC | 1 cut(s) | 212 |
| Ama87I | CYCGRG | 1 cut(s) | 440 |
| AoxI | GGCC | 4 cut(s) | 94, 191, 258, 447 |
| ApeKI | GCWGC | 1 cut(s) | 394 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 212 |
| AspLEI | GCGC | 1 cut(s) | 125 |
| AspS9I | GGNCC | 1 cut(s) | 381 |
| AsuC2I | CCSGG | 2 cut(s) | 62, 120 |
| AsuHPI | GGTGA | 2 cut(s) | 136, 345 |
| AsuNHI | GCTAGC | 1 cut(s) | 71 |
| AvaI | CYCGRG | 1 cut(s) | 440 |
| AvaII | GGWCC | 1 cut(s) | 381 |
| BalI | TGGCCA | 1 cut(s) | 260 |
| BanI | GGYRCC | 1 cut(s) | 122 |
| BanII | GRGCYC | 1 cut(s) | 441 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 261, 293 |
| BbsI | GAAGAC | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 1 cut(s) | 441 |
| BbvCI | CCTCAGC | 1 cut(s) | 109 |
| BbvI | GCAGC | 1 cut(s) | 381 |
| BccI | CCATC | 1 cut(s) | 362 |
| BciT130I | CCWGG | 1 cut(s) | 357 |
| BcnI | CCSGG | 2 cut(s) | 62, 120 |
| BcoDI | GTCTC | 1 cut(s) | 212 |
| BfaI | CTAG | 1 cut(s) | 72 |
| BfmI | CTRYAG | 2 cut(s) | 195, 540 |
| BfoI | RGCGCY | 1 cut(s) | 126 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 62, 455 |
| BisI | GCNGC | 2 cut(s) | 57, 395 |
| BlsI | GCNGC | 2 cut(s) | 58, 396 |
| Bme1390I | CCNGG | 3 cut(s) | 62, 120, 357 |
| Bme18I | GGWCC | 1 cut(s) | 381 |
| BmeT110I | CYCGRG | 1 cut(s) | 440 |
| BmgT120I | GGNCC | 1 cut(s) | 381 |
| BmiI | GGNNCC | 2 cut(s) | 124, 297 |
| BmrFI | CCNGG | 3 cut(s) | 62, 120, 357 |
| BmrI | ACTGGG | 1 cut(s) | 301 |
| BmsI | GCATC | 2 cut(s) | 398, 525 |
| BmtI | GCTAGC | 1 cut(s) | 75 |
| BmuI | ACTGGG | 1 cut(s) | 301 |
| BpiI | GAAGAC | 1 cut(s) | 137 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 209, 241 |
| Bpu10I | CCTNAGC | 1 cut(s) | 109 |
| BpuEI | CTTGAG | 1 cut(s) | 83 |
| BpuMI | CCSGG | 2 cut(s) | 62, 120 |
| BsaHI | GRCGYC | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 5 cut(s) | 30, 60, 118, 261, 356 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 131, 161 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 92, 200, 404 |
| Bse1I | ACTGG | 3 cut(s) | 97, 296, 383 |
| Bse3DI | GCAATG | 3 cut(s) | 150, 166, 182 |
| BseBI | CCWGG | 1 cut(s) | 357 |
| BseDI | CCNNGG | 5 cut(s) | 30, 60, 118, 261, 356 |
| BseGI | GGATG | 2 cut(s) | 413, 474 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 92, 200, 404 |
| BseMI | GCAATG | 3 cut(s) | 150, 166, 182 |
| BseMII | CTCAG | 2 cut(s) | 123, 240 |
| BseNI | ACTGG | 3 cut(s) | 97, 296, 383 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BseXI | GCAGC | 1 cut(s) | 381 |
| BsgI | GTGCAG | 1 cut(s) | 530 |
| BshFI | GGCC | 4 cut(s) | 96, 193, 260, 449 |
| BshNI | GGYRCC | 1 cut(s) | 122 |
| BsiHKAI | GWGCWC | 1 cut(s) | 441 |
| BsiHKCI | CYCGRG | 1 cut(s) | 440 |
| BsiSI | CCGG | 2 cut(s) | 62, 120 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 92, 200, 404 |
| BsmAI | GTCTC | 1 cut(s) | 212 |
| BsnI | GGCC | 4 cut(s) | 96, 193, 260, 449 |
| BsoBI | CYCGRG | 1 cut(s) | 440 |
| Bsp1286I | GDGCHC | 1 cut(s) | 441 |
| BspACI | CCGC | 2 cut(s) | 57, 283 |
| BspANI | GGCC | 4 cut(s) | 96, 193, 260, 449 |
| BspCNI | CTCAG | 2 cut(s) | 122, 241 |
| BspLI | GGNNCC | 2 cut(s) | 124, 297 |
| BspMAI | CTGCAG | 1 cut(s) | 544 |
| BspOI | GCTAGC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 1 cut(s) | 122 |
| BsrDI | GCAATG | 3 cut(s) | 150, 166, 182 |
| BsrI | ACTGG | 3 cut(s) | 97, 296, 383 |
| BssECI | CCNNGG | 5 cut(s) | 30, 60, 118, 261, 356 |
| BssNI | GRCGYC | 1 cut(s) | 123 |
| BssT1I | CCWWGG | 1 cut(s) | 261 |
| Bst2UI | CCWGG | 1 cut(s) | 357 |
| Bst4CI | ACNGT | 4 cut(s) | 31, 53, 199, 338 |
| Bst6I | CTCTTC | 2 cut(s) | 163, 424 |
| BstACI | GRCGYC | 1 cut(s) | 123 |
| BstC8I | GCNNGC | 4 cut(s) | 73, 157, 540, 544 |
| BstDEI | CTNAG | 2 cut(s) | 109, 249 |
| BstDSI | CCRYGG | 1 cut(s) | 30 |
| BstEII | GGTNACC | 1 cut(s) | 351 |
| BstF5I | GGATG | 2 cut(s) | 413, 474 |
| BstH2I | RGCGCY | 1 cut(s) | 126 |
| BstHHI | GCGC | 1 cut(s) | 125 |
| BstMAI | GTCTC | 1 cut(s) | 212 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 53, 62, 455 |
| BstNI | CCWGG | 1 cut(s) | 357 |
| BstPI | GGTNACC | 1 cut(s) | 351 |
| BstSCI | CCNGG | 3 cut(s) | 60, 118, 355 |
| BstSFI | CTRYAG | 2 cut(s) | 195, 540 |
| BstV1I | GCAGC | 1 cut(s) | 381 |
| BstV2I | GAAGAC | 1 cut(s) | 137 |
| BsuRI | GGCC | 4 cut(s) | 96, 193, 260, 449 |
| BtgI | CCRYGG | 1 cut(s) | 30 |
| BtgZI | GCGATG | 1 cut(s) | 511 |
| BtsCI | GGATG | 2 cut(s) | 413, 474 |
| BtsI | GCAGTG | 1 cut(s) | 518 |
| BtsIMutI | CAGTG | 2 cut(s) | 90, 518 |
| Cac8I | GCNNGC | 4 cut(s) | 73, 157, 540, 544 |
| CfoI | GCGC | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 1 cut(s) | 381 |
| Csp6I | GTAC | 3 cut(s) | 334, 361, 376 |
| CviAII | CATG | 4 cut(s) | 13, 181, 385, 400 |
| CviQI | GTAC | 3 cut(s) | 334, 361, 376 |
| DdeI | CTNAG | 2 cut(s) | 109, 249 |
| DinI | GGCGCC | 1 cut(s) | 124 |
| EaeI | YGGCCR | 1 cut(s) | 258 |
| Eam1104I | CTCTTC | 2 cut(s) | 163, 424 |
| EarI | CTCTTC | 2 cut(s) | 163, 424 |
| Ecl136II | GAGCTC | 1 cut(s) | 439 |
| Eco130I | CCWWGG | 1 cut(s) | 261 |
| Eco24I | GRGCYC | 1 cut(s) | 441 |
| Eco47I | GGWCC | 1 cut(s) | 381 |
| Eco53kI | GAGCTC | 1 cut(s) | 439 |
| Eco57I | CTGAAG | 2 cut(s) | 6, 227 |
| Eco88I | CYCGRG | 1 cut(s) | 440 |
| Eco91I | GGTNACC | 1 cut(s) | 351 |
| EcoICRI | GAGCTC | 1 cut(s) | 439 |
| EcoO65I | GGTNACC | 1 cut(s) | 351 |
| EcoRII | CCWGG | 1 cut(s) | 355 |
| EcoT14I | CCWWGG | 1 cut(s) | 261 |
| EcoT22I | ATGCAT | 1 cut(s) | 182 |
| EcoT38I | GRGCYC | 1 cut(s) | 441 |
| EgeI | GGCGCC | 1 cut(s) | 124 |
| EheI | GGCGCC | 1 cut(s) | 124 |
| ErhI | CCWWGG | 1 cut(s) | 261 |
| FaeI | CATG | 4 cut(s) | 16, 184, 388, 403 |
| FaiI | YATR | 5 cut(s) | 14, 182, 366, 386, 401 |
| FatI | CATG | 4 cut(s) | 12, 180, 384, 399 |
| FblI | GTMKAC | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 2 cut(s) | 57, 395 |
| FokI | GGATG | 2 cut(s) | 420, 461 |
| FriOI | GRGCYC | 1 cut(s) | 441 |
| Fsp4HI | GCNGC | 2 cut(s) | 57, 395 |
| FspBI | CTAG | 1 cut(s) | 72 |
| GlaI | GCGC | 1 cut(s) | 124 |
| GluI | GCNGC | 2 cut(s) | 57, 395 |
| HaeII | RGCGCY | 1 cut(s) | 126 |
| HaeIII | GGCC | 4 cut(s) | 96, 193, 260, 449 |
| HapII | CCGG | 2 cut(s) | 62, 120 |
| HhaI | GCGC | 1 cut(s) | 125 |
| Hin1I | GRCGYC | 1 cut(s) | 123 |
| Hin1II | CATG | 4 cut(s) | 16, 184, 388, 403 |
| Hin6I | GCGC | 1 cut(s) | 123 |
| HinP1I | GCGC | 1 cut(s) | 123 |
| HinfI | GANTC | 4 cut(s) | 220, 251, 416, 489 |
| HpaII | CCGG | 2 cut(s) | 62, 120 |
| HphI | GGTGA | 2 cut(s) | 136, 345 |
| Hpy166II | GTNNAC | 3 cut(s) | 43, 271, 334 |
| Hpy188I | TCNGA | 1 cut(s) | 488 |
| Hpy188III | TCNNGA | 2 cut(s) | 217, 248 |
| Hpy8I | GTNNAC | 3 cut(s) | 43, 271, 334 |
| HpyAV | CCTTC | 6 cut(s) | 178, 242, 287, 316, 366, 448 |
| HpyCH4III | ACNGT | 4 cut(s) | 31, 53, 199, 338 |
| HpyCH4IV | ACGT | 1 cut(s) | 498 |
| HpyCH4V | TGCA | 8 cut(s) | 83, 155, 175, 180, 411, 511, 516, 542 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 53, 62, 455 |
| HpyF3I | CTNAG | 2 cut(s) | 109, 249 |
| HpySE526I | ACGT | 1 cut(s) | 498 |
| Hsp92I | GRCGYC | 1 cut(s) | 123 |
| Hsp92II | CATG | 4 cut(s) | 16, 184, 388, 403 |
| HspAI | GCGC | 1 cut(s) | 123 |
| KasI | GGCGCC | 1 cut(s) | 122 |
| Lsp1109I | GCAGC | 1 cut(s) | 381 |
| LweI | GCATC | 2 cut(s) | 398, 525 |
| MaeI | CTAG | 1 cut(s) | 72 |
| MaeII | ACGT | 1 cut(s) | 498 |
| MaeIII | GTNAC | 1 cut(s) | 351 |
| MboII | GAAGA | 5 cut(s) | 12, 142, 180, 220, 411 |
| MhlI | GDGCHC | 1 cut(s) | 441 |
| MlsI | TGGCCA | 1 cut(s) | 260 |
| MluCI | AATT | 1 cut(s) | 308 |
| MluNI | TGGCCA | 1 cut(s) | 260 |
| Mly113I | GGCGCC | 1 cut(s) | 123 |
| MlyI | GAGTC | 3 cut(s) | 214, 260, 410 |
| MmeI | TCCRAC | 2 cut(s) | 181, 297 |
| MnlI | CCTC | 6 cut(s) | 19, 107, 118, 157, 436, 439 |
| Mox20I | TGGCCA | 1 cut(s) | 260 |
| Mph1103I | ATGCAT | 1 cut(s) | 182 |
| MroXI | GAANNNNTTC | 1 cut(s) | 212 |
| MscI | TGGCCA | 1 cut(s) | 260 |
| MslI | CAYNNNNRTG | 1 cut(s) | 185 |
| Msp20I | TGGCCA | 1 cut(s) | 260 |
| MspI | CCGG | 2 cut(s) | 62, 120 |
| MspR9I | CCNGG | 3 cut(s) | 62, 120, 357 |
| MvaI | CCWGG | 1 cut(s) | 357 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 53, 62, 455 |
| NarI | GGCGCC | 1 cut(s) | 123 |
| NciI | CCSGG | 2 cut(s) | 62, 120 |
| NheI | GCTAGC | 1 cut(s) | 71 |
| NlaIII | CATG | 4 cut(s) | 16, 184, 388, 403 |
| NlaIV | GGNNCC | 2 cut(s) | 124, 297 |
| NmuCI | GTSAC | 1 cut(s) | 351 |
| NsiI | ATGCAT | 1 cut(s) | 182 |
| PaeR7I | CTCGAG | 1 cut(s) | 440 |
| PdmI | GAANNNNTTC | 1 cut(s) | 212 |
| PfeI | GAWTC | 1 cut(s) | 489 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 92 |
| PkrI | GCNGC | 2 cut(s) | 58, 396 |
| PleI | GAGTC | 3 cut(s) | 214, 259, 410 |
| PluTI | GGCGCC | 1 cut(s) | 126 |
| PpsI | GAGTC | 3 cut(s) | 214, 259, 410 |
| Psp124BI | GAGCTC | 1 cut(s) | 441 |
| Psp1406I | AACGTT | 1 cut(s) | 498 |
| Psp6I | CCWGG | 1 cut(s) | 355 |
| PspEI | GGTNACC | 1 cut(s) | 351 |
| PspGI | CCWGG | 1 cut(s) | 355 |
| PspN4I | GGNNCC | 2 cut(s) | 124, 297 |
| PspPI | GGNCC | 1 cut(s) | 381 |
| PspXI | VCTCGAGB | 1 cut(s) | 440 |
| PstI | CTGCAG | 1 cut(s) | 544 |
| RsaI | GTAC | 3 cut(s) | 335, 362, 377 |
| RsaNI | GTAC | 3 cut(s) | 334, 361, 376 |
| RseI | CAYNNNNRTG | 1 cut(s) | 185 |
| SacI | GAGCTC | 1 cut(s) | 441 |
| SatI | GCNGC | 2 cut(s) | 57, 395 |
| Sau96I | GGNCC | 1 cut(s) | 381 |
| SbfI | CCTGCAGG | 1 cut(s) | 544 |
| SchI | GAGTC | 3 cut(s) | 214, 260, 410 |
| ScrFI | CCNGG | 3 cut(s) | 62, 120, 357 |
| SdaI | CCTGCAGG | 1 cut(s) | 544 |
| SduI | GDGCHC | 1 cut(s) | 441 |
| SfaNI | GCATC | 2 cut(s) | 398, 525 |
| SfcI | CTRYAG | 2 cut(s) | 195, 540 |
| SfoI | GGCGCC | 1 cut(s) | 124 |
| Sfr274I | CTCGAG | 1 cut(s) | 440 |
| SinI | GGWCC | 1 cut(s) | 381 |
| SlaI | CTCGAG | 1 cut(s) | 440 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 185 |
| SmlI | CTYRAG | 2 cut(s) | 98, 440 |
| SmoI | CTYRAG | 2 cut(s) | 98, 440 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 544 |
| Sse9I | AATT | 1 cut(s) | 308 |
| SsiI | CCGC | 2 cut(s) | 57, 283 |
| SspDI | GGCGCC | 1 cut(s) | 122 |
| SspMI | CTAG | 1 cut(s) | 72 |
| SstI | GAGCTC | 1 cut(s) | 441 |
| StyD4I | CCNGG | 3 cut(s) | 60, 118, 355 |
| StyI | CCWWGG | 1 cut(s) | 261 |
| TaaI | ACNGT | 4 cut(s) | 31, 53, 199, 338 |
| TaiI | ACGT | 1 cut(s) | 501 |
| TaqI | TCGA | 3 cut(s) | 216, 441, 492 |
| TasI | AATT | 1 cut(s) | 308 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TfiI | GAWTC | 1 cut(s) | 489 |
| TscAI | CASTG | 2 cut(s) | 97, 518 |
| TseFI | GTSAC | 1 cut(s) | 351 |
| TseI | GCWGC | 1 cut(s) | 394 |
| Tsp45I | GTSAC | 1 cut(s) | 351 |
| TspDTI | ATGAA | 3 cut(s) | 197, 463, 514 |
| TspGWI | ACGGA | 1 cut(s) | 467 |
| TspRI | CASTG | 2 cut(s) | 97, 518 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 92 |
| VpaK11BI | GGWCC | 1 cut(s) | 381 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XhoI | CTCGAG | 1 cut(s) | 440 |
| XmiI | GTMKAC | 1 cut(s) | 270 |
| XmnI | GAANNNNTTC | 1 cut(s) | 212 |
| XspI | CTAG | 1 cut(s) | 72 |
| Zsp2I | ATGCAT | 1 cut(s) | 182 |