Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Reverse (-)

17291415 .. 17292690

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTTCCTCCATGATTTCCTCCGCTACCGTGTCTACAGTTTACGCCGACTGTGCCGCCCCGGCTCAAGCCAGCATGGTTGCTCCATTCACTGGCCTCAAGTCGTCCTCAGCTTTCCCTGTCACCAGAAAGAGCAACGACATTACCTCTATTGCAAGCAATGGAGGAAGAGTGCAATGTATGCAGGTGTGGCCTCCACTTGGATTGAAGAAGTTCGAGACCCTCTCTTACCTTCCTCCTCTCTCTCCAGAGTCCTTGGCCAAGGAAGTTGACTACCTCCTCCGCAAAAACTGGGTTCCCTGCTTGGAATTTGAGTTGGAGACTGGATTTGTGTACCGTGAGAACCACAAATCCCCAGGATACTATGATGGAAGGTACTGGACAATGTGGAAGCTGCCCATGTTCGGATGCACCGACTCTTCTCAGGTGTTGAAGGAGCTGGAGGAGAACAAGAAGGCTTATCCCAACGCCTTCATCCGTATCATCGGATTCGACAACGTCCGCCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCTCCAGGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

184

Amino Acids

20.51

Weight (kDa)

8.54

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	4 cut(s)	24, 57, 283, 502
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	2 cut(s)	335, 377
AfiI	CCNNNNNNNGG	3 cut(s)	92, 200, 404
AgsI	TTSAA	2 cut(s)	208, 433
AjnI	CCWGG	2 cut(s)	355, 541
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	113, 394, 439
AluI	AGCT	3 cut(s)	113, 394, 439
Alw26I	GTCTC	2 cut(s)	212, 314
AoxI	GGCC	3 cut(s)	94, 191, 258
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	357, 543
BciVI	GTATCC	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	212, 314
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	57, 395
BlsI	GCNGC	2 cut(s)	58, 396
Bme1390I	CCNGG	3 cut(s)	62, 357, 543
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	3 cut(s)	62, 357, 543
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	398, 525
BmuI	ACTGGG	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	3 cut(s)	231, 461, 525
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	51, 83
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	60, 255, 261, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 200, 404
Bse1I	ACTGG	4 cut(s)	97, 296, 328, 383
Bse3DI	GCAATG	2 cut(s)	166, 182
BseBI	CCWGG	2 cut(s)	357, 543
BseDI	CCNNGG	4 cut(s)	60, 255, 261, 355
BseGI	GGATG	2 cut(s)	413, 474
BseLI	CCNNNNNNNGG	3 cut(s)	92, 200, 404
BseMI	GCAATG	2 cut(s)	166, 182
BseMII	CTCAG	2 cut(s)	123, 437
BseNI	ACTGG	4 cut(s)	97, 296, 328, 383
BseRI	GAGGAG	3 cut(s)	228, 269, 458
BseXI	GCAGC	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	96, 193, 260
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	92, 200, 404
BsmAI	GTCTC	2 cut(s)	212, 314
BsnI	GGCC	3 cut(s)	96, 193, 260
Bso31I	GGTCTC	1 cut(s)	212
BspACI	CCGC	4 cut(s)	24, 57, 283, 502
BspANI	GGCC	3 cut(s)	96, 193, 260
BspCNI	CTCAG	2 cut(s)	122, 436
BspLI	GGNNCC	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	166, 182
BsrI	ACTGG	4 cut(s)	97, 296, 328, 383
BssECI	CCNNGG	4 cut(s)	60, 255, 261, 355
BssT1I	CCWWGG	2 cut(s)	255, 261
Bst2UI	CCWGG	2 cut(s)	357, 543
Bst4CI	ACNGT	4 cut(s)	31, 40, 53, 338
Bst6I	CTCTTC	2 cut(s)	163, 424
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	73, 157
BstDEI	CTNAG	2 cut(s)	109, 423
BstF5I	GGATG	2 cut(s)	413, 474
BstMAI	GTCTC	2 cut(s)	212, 314
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 62, 181, 190
BstNI	CCWGG	2 cut(s)	357, 543
BstSCI	CCNGG	3 cut(s)	60, 355, 541
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	96, 193, 260
BtgZI	GCGATG	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	413, 474
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	2 cut(s)	90, 518
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	73, 157
Csp6I	GTAC	2 cut(s)	334, 376
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	3 cut(s)	13, 76, 400
CviQI	GTAC	2 cut(s)	334, 376
DdeI	CTNAG	2 cut(s)	109, 423
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	163, 424
EarI	CTCTTC	2 cut(s)	163, 424
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	2 cut(s)	255, 261
Eco31I	GGTCTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	355, 541
EcoT14I	CCWWGG	2 cut(s)	255, 261
ErhI	CCWWGG	2 cut(s)	255, 261
FaeI	CATG	3 cut(s)	16, 79, 403
FaiI	YATR	5 cut(s)	14, 77, 182, 366, 401
FatI	CATG	3 cut(s)	12, 75, 399
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	57, 395
FokI	GGATG	2 cut(s)	420, 461
Fsp4HI	GCNGC	2 cut(s)	57, 395
GluI	GCNGC	2 cut(s)	57, 395
GsuI	CTGGAG	3 cut(s)	231, 461, 525
HaeIII	GGCC	3 cut(s)	96, 193, 260
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	3 cut(s)	16, 79, 403
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	251, 416, 489
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	4 cut(s)	36, 43, 271, 334
Hpy188I	TCNGA	2 cut(s)	407, 488
Hpy188III	TCNNGA	2 cut(s)	217, 248
Hpy8I	GTNNAC	4 cut(s)	36, 43, 271, 334
HpyAV	CCTTC	5 cut(s)	242, 366, 427, 448, 481
HpyCH4III	ACNGT	4 cut(s)	31, 40, 53, 338
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	6 cut(s)	155, 175, 184, 411, 511, 516
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 62, 181, 190
HpyF3I	CTNAG	2 cut(s)	109, 423
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	16, 79, 403
LmnI	GCTCC	2 cut(s)	88, 436
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	398, 525
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	180, 220, 411
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	1 cut(s)	308
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	260, 410
MmeI	TCCRAC	1 cut(s)	297
Mox20I	TGGCCA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	3 cut(s)	62, 357, 543
MvaI	CCWGG	2 cut(s)	357, 543
MwoI	GCNNNNNNNGC	4 cut(s)	53, 62, 181, 190
NciI	CCSGG	1 cut(s)	62
NlaIII	CATG	3 cut(s)	16, 79, 403
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	58, 396
PleI	GAGTC	2 cut(s)	259, 410
PpsI	GAGTC	2 cut(s)	259, 410
Psp6I	CCWGG	2 cut(s)	355, 541
PspGI	CCWGG	2 cut(s)	355, 541
PspN4I	GGNNCC	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	497
RsaI	GTAC	2 cut(s)	335, 377
RsaNI	GTAC	2 cut(s)	334, 376
SatI	GCNGC	2 cut(s)	57, 395
SchI	GAGTC	2 cut(s)	260, 410
ScrFI	CCNGG	3 cut(s)	62, 357, 543
SfaNI	GCATC	2 cut(s)	398, 525
SfcI	CTRYAG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	66, 98
SmoI	CTYRAG	2 cut(s)	66, 98
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	4 cut(s)	24, 57, 283, 502
StyD4I	CCNGG	3 cut(s)	60, 355, 541
StyI	CCWWGG	2 cut(s)	255, 261
TaaI	ACNGT	4 cut(s)	31, 40, 53, 338
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	2 cut(s)	216, 492
TasI	AATT	1 cut(s)	308
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	489
TscAI	CASTG	2 cut(s)	97, 518
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	463, 514
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	2 cut(s)	97, 518
Tth111I	GACNNNGTC	1 cut(s)	497
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.