Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Forward (+)

30235873 .. 30237311

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTCCTCCATGGTTTCATCGGCAGCTGTAGTTCAGCGGACTAGCTCCCCTGCTCAGGCCAGCATGGTTGCGCCCTTCACTGGGCTCAAGTCAGCCTCTGCCTTCCCTGTCACCCGCAAGGCCAACAATGATATTACCTCTATCTCCAGCAATGGTGGAAGAGTTCAGTGCATGCGAGTGTGGCCTCCAATTGGATTGAAGAAGTTCGAGACTCTCTCTTACCTTCCTCCCCTATCTGCCGAGTCATTGGCCAAGGAAGTAGATTATCTTCTCCGCAACAACTGGGTTCCCACCTTGGAATTTGAGTTGGGGAACCCTTTCGTTCACCGTGAGAACGGCAATTCCCCAGGGTACTATGATGGCCGTTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACTGATTCTTCTCAGGTGTTGAAGGAGCTCGACGAGGCCAGTACCACTTACCCCAATTCATTCATCAGGATCATCGGATTCGACAACATCCGCCAAACACAGTGCGTTAGTTTCATCGCTTACAAGCCCCCTAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

182

Amino Acids

20.1

Weight (kDa)

8.79

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	40, 118, 277, 496
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	2 cut(s)	252, 364
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	2 cut(s)	356, 448
AfiI	CCNNNNNNNGG	5 cut(s)	58, 83, 84, 194, 398
AgsI	TTSAA	2 cut(s)	202, 427
AjnI	CCWGG	1 cut(s)	349
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	4 cut(s)	29, 48, 388, 433
AluI	AGCT	4 cut(s)	29, 48, 388, 433
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	6 cut(s)	60, 123, 185, 252, 364, 441
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	2 cut(s)	206, 320
AspLEI	GCGC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	106, 320
BalI	TGGCCA	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	90, 435
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	2 cut(s)	351, 355
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	45, 537
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	291, 317
BmrFI	CCNGG	1 cut(s)	351
BmrI	ACTGGG	2 cut(s)	93, 295
BmuI	ACTGGG	2 cut(s)	93, 295
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	74
BsaJI	CCNNGG	5 cut(s)	12, 255, 297, 349, 350
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 83, 84, 194, 398
Bse1I	ACTGG	4 cut(s)	88, 290, 377, 444
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	5 cut(s)	12, 255, 297, 349, 350
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	5 cut(s)	58, 83, 84, 194, 398
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	71, 431
BseNI	ACTGG	4 cut(s)	88, 290, 377, 444
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	6 cut(s)	62, 125, 187, 254, 366, 443
BsiHKAI	GWGCWC	1 cut(s)	435
BslI	CCNNNNNNNGG	5 cut(s)	58, 83, 84, 194, 398
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	6 cut(s)	62, 125, 187, 254, 366, 443
Bsp1286I	GDGCHC	2 cut(s)	90, 435
Bsp143I	GATC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	4 cut(s)	40, 118, 277, 496
BspANI	GGCC	6 cut(s)	62, 125, 187, 254, 366, 443
BspCNI	CTCAG	2 cut(s)	70, 430
BspLI	GGNNCC	2 cut(s)	291, 317
BspPI	GGATC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	4 cut(s)	88, 290, 377, 444
BssECI	CCNNGG	5 cut(s)	12, 255, 297, 349, 350
BssMI	GATC	1 cut(s)	474
BssT1I	CCWWGG	3 cut(s)	12, 255, 297
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	332, 507
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	64, 176
BstDEI	CTNAG	2 cut(s)	57, 417
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	474
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	6 cut(s)	62, 125, 187, 254, 366, 443
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	4 cut(s)	81, 176, 405, 512
Cac8I	GCNNGC	2 cut(s)	64, 176
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	355, 447
CviAII	CATG	3 cut(s)	13, 67, 175
CviQI	GTAC	2 cut(s)	355, 447
DdeI	CTNAG	2 cut(s)	57, 417
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
EaeI	YGGCCR	2 cut(s)	252, 364
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	3 cut(s)	12, 255, 297
Eco24I	GRGCYC	2 cut(s)	90, 435
Eco53kI	GAGCTC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	3 cut(s)	12, 255, 297
EcoT38I	GRGCYC	2 cut(s)	90, 435
ErhI	CCWWGG	3 cut(s)	12, 255, 297
FaeI	CATG	3 cut(s)	16, 70, 178
FaiI	YATR	4 cut(s)	14, 68, 176, 360
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	3 cut(s)	12, 66, 174
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	2 cut(s)	90, 435
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	45, 537
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	6 cut(s)	62, 125, 187, 254, 366, 443
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	16, 70, 178
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	214, 245, 410, 483
HphI	GGTGA	2 cut(s)	106, 320
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	482
Hpy188III	TCNNGA	2 cut(s)	211, 472
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	4 cut(s)	88, 115, 236, 421
HpyCH4III	ACNGT	2 cut(s)	332, 507
HpyCH4V	TGCA	2 cut(s)	174, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	57, 417
Hsp92II	CATG	3 cut(s)	16, 70, 178
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	53, 430
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	45, 537
MaeIII	GTNAC	2 cut(s)	112, 368
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	4 cut(s)	174, 214, 263, 405
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	90, 435
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	4 cut(s)	192, 302, 343, 460
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	208, 254
MnlI	CCTC	6 cut(s)	19, 109, 151, 198, 240, 433
Mox20I	TGGCCA	1 cut(s)	254
MroXI	GAANNNNTTC	2 cut(s)	206, 320
MscI	TGGCCA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	29, 40
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	474
NlaIII	CATG	3 cut(s)	16, 70, 178
NlaIV	GGNNCC	2 cut(s)	291, 317
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	178
PasI	CCCWGGG	1 cut(s)	350
PdmI	GAANNNNTTC	2 cut(s)	206, 320
PfeI	GAWTC	2 cut(s)	410, 483
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	2 cut(s)	208, 253
PpsI	GAGTC	2 cut(s)	208, 253
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	291, 317
PstNI	CAGNNNCTG	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	356, 448
RsaNI	GTAC	2 cut(s)	355, 447
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	435
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	474
SchI	GAGTC	2 cut(s)	208, 254
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	90, 435
SetI	ASST	8 cut(s)	31, 50, 143, 228, 299, 390, 423, 435
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	4 cut(s)	192, 302, 343, 460
SsiI	CCGC	4 cut(s)	40, 118, 277, 496
SspMI	CTAG	2 cut(s)	45, 537
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	3 cut(s)	12, 255, 297
TaaI	ACNGT	2 cut(s)	332, 507
TaqI	TCGA	3 cut(s)	210, 435, 486
TasI	AATT	4 cut(s)	192, 302, 343, 460
TfiI	GAWTC	2 cut(s)	410, 483
TscAI	CASTG	4 cut(s)	88, 176, 412, 512
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	9, 453, 457, 508
TspRI	CASTG	4 cut(s)	88, 176, 412, 512
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	2 cut(s)	206, 320
XspI	CTAG	2 cut(s)	45, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.