Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Forward (+)

22935658 .. 22936753

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTTCCTCAATGATTTCCTCCGGTACCGTGGCTACAGTTTCCGCCGACCGCCCAGCCCCCTCTCAAGCCAGAATGGTTGCTCCATTCACCGGCCTCAAGTCCTCCTCAGCTTTCCCTGTCACCAGAAAAAGCAATGACATTACCTCTATTGCAAGCAATGGAGGAAGAGTGCAATGCATGCAGGTGTGGCCTCCACTCGGACTGAAGAAGTTCGAGACCCTCTCTTACCTTCCTCCCCTTTCTACCGAGTCCTTGGCCAAGGAAGTTGACTACCTCCTCCGCAAGAACTGGGTTCCCTGCTTGGAATTTGAGTCCCCAGGATACTATGATGGAAGGTACTGGACAATGTGGAAGCTGCCCATGTTCGGATGCACCGACTCTTCCCAGGTGTTGAAGGAGCTGGAAGAGGCCAAGAAGGCCTACCCCACCTCCTTCATCCGTATCATCGGATTCGACAATGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCTTACAAGCCTCCAGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

172

Amino Acids

19.04

Weight (kDa)

9.06

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 46	2.8e-20	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	72 - 168	1.1e-38	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	3 cut(s)	45, 52, 283
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	28, 341
AfiI	CCNNNNNNNGG	3 cut(s)	92, 200, 368
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	3 cut(s)	319, 387, 505
AluBI	AGCT	3 cut(s)	113, 358, 403
AluI	AGCT	3 cut(s)	113, 358, 403
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	5 cut(s)	94, 191, 258, 411, 420
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	212
Asp718I	GGTACC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	321, 389, 507
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	3 cut(s)	321, 389, 507
BmiI	GGNNCC	2 cut(s)	28, 297
BmrFI	CCNGG	3 cut(s)	321, 389, 507
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	362, 489
BmuI	ACTGGG	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	51, 83
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	5 cut(s)	30, 255, 261, 319, 387
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 416, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 200, 368
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	296, 347
Bse3DI	GCAATG	3 cut(s)	142, 166, 182
BseBI	CCWGG	3 cut(s)	321, 389, 507
BseDI	CCNNGG	5 cut(s)	30, 255, 261, 319, 387
BseGI	GGATG	2 cut(s)	377, 438
BseLI	CCNNNNNNNGG	3 cut(s)	92, 200, 368
BseMI	GCAATG	3 cut(s)	142, 166, 182
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	296, 347
BseRI	GAGGAG	2 cut(s)	97, 269
BseXI	GCAGC	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	5 cut(s)	96, 193, 260, 413, 422
BshNI	GGYRCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	24, 93
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	3 cut(s)	92, 200, 368
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	5 cut(s)	96, 193, 260, 413, 422
Bso31I	GGTCTC	1 cut(s)	212
BspACI	CCGC	3 cut(s)	45, 52, 283
BspANI	GGCC	5 cut(s)	96, 193, 260, 413, 422
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	28, 297
BspMI	ACCTGC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	3 cut(s)	142, 166, 182
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	296, 347
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	5 cut(s)	30, 255, 261, 319, 387
BssT1I	CCWWGG	2 cut(s)	255, 261
Bst2UI	CCWGG	3 cut(s)	321, 389, 507
Bst4CI	ACNGT	2 cut(s)	31, 40
Bst6I	CTCTTC	3 cut(s)	163, 388, 402
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	157, 182
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	377, 438
BstMAI	GTCTC	1 cut(s)	212
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 190, 419
BstNI	CCWGG	3 cut(s)	321, 389, 507
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	319, 387, 505
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	5 cut(s)	96, 193, 260, 413, 422
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	475
BtsCI	GGATG	2 cut(s)	377, 438
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	1 cut(s)	482
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	157, 182
Cfr10I	RCCGGY	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	27, 340
CviAII	CATG	2 cut(s)	181, 364
CviQI	GTAC	2 cut(s)	27, 340
DdeI	CTNAG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	3 cut(s)	163, 388, 402
EarI	CTCTTC	3 cut(s)	163, 388, 402
EciI	GGCGGA	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	255, 261
Eco147I	AGGCCT	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	319, 387, 505
EcoT14I	CCWWGG	2 cut(s)	255, 261
EcoT22I	ATGCAT	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	255, 261
FaeI	CATG	2 cut(s)	184, 367
FaiI	YATR	3 cut(s)	182, 330, 365
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	2 cut(s)	180, 363
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	2 cut(s)	384, 425
Fsp4HI	GCNGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	359
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	5 cut(s)	96, 193, 260, 413, 422
HapII	CCGG	2 cut(s)	24, 93
Hin1II	CATG	2 cut(s)	184, 367
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	251, 314, 380, 453
HpaII	CCGG	2 cut(s)	24, 93
HphI	GGTGA	2 cut(s)	82, 115
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	203, 371, 452
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	5 cut(s)	242, 330, 391, 412, 445
HpyCH4III	ACNGT	2 cut(s)	31, 40
HpyCH4V	TGCA	7 cut(s)	155, 175, 180, 184, 375, 475, 480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 190, 419
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	184, 367
KpnI	GGTACC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	88, 400
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	362, 489
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	180, 220, 375, 419
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	1 cut(s)	308
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	3 cut(s)	260, 323, 374
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	2 cut(s)	24, 93
MspR9I	CCNGG	3 cut(s)	321, 389, 507
MvaI	CCWGG	3 cut(s)	321, 389, 507
MwoI	GCNNNNNNNGC	3 cut(s)	181, 190, 419
NlaIII	CATG	2 cut(s)	184, 367
NlaIV	GGNNCC	2 cut(s)	28, 297
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	3 cut(s)	259, 322, 374
PpsI	GAGTC	3 cut(s)	259, 322, 374
Psp6I	CCWGG	3 cut(s)	319, 387, 505
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	3 cut(s)	319, 387, 505
PspN4I	GGNNCC	2 cut(s)	28, 297
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	2 cut(s)	28, 341
RsaNI	GTAC	2 cut(s)	27, 340
RseI	CAYNNNNRTG	1 cut(s)	185
SatI	GCNGC	1 cut(s)	359
SchI	GAGTC	3 cut(s)	260, 323, 374
ScrFI	CCNGG	3 cut(s)	321, 389, 507
SfaNI	GCATC	2 cut(s)	362, 489
SfcI	CTRYAG	1 cut(s)	36
SfiI	GGCCNNNNNGGCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	66, 98
SmoI	CTYRAG	2 cut(s)	66, 98
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	308
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	3 cut(s)	45, 52, 283
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	319, 387, 505
StyI	CCWWGG	2 cut(s)	255, 261
TaaI	ACNGT	2 cut(s)	31, 40
TaqI	TCGA	2 cut(s)	216, 456
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	453
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	427, 478
TspGWI	ACGGA	2 cut(s)	431, 455
TspRI	CASTG	1 cut(s)	482
Tth111I	GACNNNGTC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.