Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

25394031 .. 25395249

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAGCAGCTATGGCAACAGCAACCAAGTGCATGTCTCTAAACCCATCTCCTCCTAAACTCCAAAACCAAACCAAATCCAAACCATTCATCTCCCTACCAACCCCACCAAAACCAAACGTCTCTCTCGCCGTCACAAGCACCGCCCTAGCCGGAGCCGTCTTCTCTTCCCTCAGCTACTCTGAGCCAGCTTTAGCCATCCAACAGATCGCTCAGCTCGCTGCAGCAAACGCCAGTAGCGACAACCGTGGCTTAGCTCTTCTCCTTCCCATCGTCCCAGCCATTGCATGGGTCCTTTACAACATCCTCCAGCCAGCTATTAACCAGGTCAACAAGATGCGTGAGAGTAAAGGTATCGTTGTTGGTCTAGGTATTGGTGGTGGTCTTGCAGCGTCAGGGCTTTTGACTCCACCTCCGGAGGCTTATGCTGCGGCAGAAGCGGCGGCTGCTAGTTCAGACAGCAGAGGACAGTTGTTGTTGATTGTTGTGACACCGGCACTACTTTGGGTTCTGTACAATATCTTGCAGCCAGCTTTGAACCAAATCAACAAGATGAGGTCTGGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

189

Amino Acids

19.46

Weight (kDa)

9.56

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	81 - 113	1.5e-15	Photosystem II protein Y (PsbY)
PsbY	PF06298	153 - 185	1.2e-10	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	4 cut(s)	144, 431, 440, 443
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	7 cut(s)	11, 177, 191, 217, 257, 317, 533
AluI	AGCT	7 cut(s)	11, 177, 191, 217, 257, 317, 533
Alw26I	GTCTC	2 cut(s)	42, 127
Aor13HI	TCCGGA	1 cut(s)	415
ApeKI	GCWGC	8 cut(s)	5, 8, 221, 224, 389, 428, 446, 526
AspS9I	GGNCC	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	8 cut(s)	17, 20, 208, 236, 401, 415, 433, 538
BccI	CCATC	3 cut(s)	55, 206, 278
BceAI	ACGGC	2 cut(s)	116, 143
BciT130I	CCWGG	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	42, 127
BfaI	CTAG	3 cut(s)	149, 368, 450
BfmI	CTRYAG	1 cut(s)	222
BlpI	GCTNAGC	2 cut(s)	213, 253
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	157, 293
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	173
Bpu1102I	GCTNAGC	2 cut(s)	213, 253
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	198, 303
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	174, 187, 227
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	8 cut(s)	17, 20, 208, 236, 401, 415, 433, 538
BseYI	CCCAGC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	153, 416, 494
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	42, 127
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	260
Bsp13I	TCCGGA	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	207
Bsp1720I	GCTNAGC	2 cut(s)	213, 253
BspACI	CCGC	4 cut(s)	144, 431, 440, 443
BspCNI	CTCAG	3 cut(s)	175, 186, 226
BspEI	TCCGGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	157, 293
BspMAI	CTGCAG	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	248, 471
Bst6I	CTCTTC	2 cut(s)	172, 264
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	4 cut(s)	189, 219, 315, 531
BstDEI	CTNAG	4 cut(s)	173, 183, 213, 253
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	198, 303
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	42, 127
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 218, 230, 428, 437, 440, 446
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	8 cut(s)	17, 20, 208, 236, 401, 415, 433, 538
BstV2I	GAAGAC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	198, 303
Cac8I	GCNNGC	4 cut(s)	189, 219, 315, 531
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	381
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	2 cut(s)	34, 288
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	4 cut(s)	173, 183, 213, 253
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	172, 264
EarI	CTCTTC	2 cut(s)	172, 264
Eco47I	GGWCC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	2 cut(s)	37, 291
FaiI	YATR	4 cut(s)	14, 35, 289, 426
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	33, 287
FokI	GGATG	2 cut(s)	185, 290
FspBI	CTAG	3 cut(s)	149, 368, 450
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	293
HapII	CCGG	3 cut(s)	153, 416, 494
HgaI	GACGC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	37, 291
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	3 cut(s)	153, 416, 494
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	184, 457
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	248, 471
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	33, 224, 287, 389, 526
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 218, 230, 428, 437, 440, 446
HpyF3I	CTNAG	4 cut(s)	173, 183, 213, 253
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	37, 291
Kpn2I	TCCGGA	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	207
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	8 cut(s)	17, 20, 208, 236, 401, 415, 433, 538
LweI	GCATC	1 cut(s)	327
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	3 cut(s)	149, 368, 450
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	133, 487
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	154, 159, 251
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	63, 182, 317, 412, 423, 458, 549
MroI	TCCGGA	1 cut(s)	415
MseI	TTAA	2 cut(s)	321, 568
MspI	CCGG	3 cut(s)	153, 416, 494
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	7 cut(s)	14, 218, 230, 428, 437, 440, 446
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	37, 291
NlaIV	GGNNCC	2 cut(s)	157, 293
NmuCI	GTSAC	2 cut(s)	133, 487
NspI	RCATGY	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	288
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	157, 293
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	321, 568
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	326
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	292
SsiI	CCGC	4 cut(s)	144, 431, 440, 443
SspMI	CTAG	3 cut(s)	149, 368, 450
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	248, 471
TaiI	ACGT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	3 cut(s)	434, 443, 446
Tru1I	TTAA	2 cut(s)	321, 568
Tru9I	TTAA	2 cut(s)	321, 568
TseFI	GTSAC	2 cut(s)	133, 487
TseI	GCWGC	8 cut(s)	5, 8, 221, 224, 389, 428, 446, 526
Tsp45I	GTSAC	2 cut(s)	133, 487
TspDTI	ATGAA	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	292
XceI	RCATGY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XspI	CTAG	3 cut(s)	149, 368, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.