Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

42828197 .. 42829324

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0255700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGCAAAGGACTCTGGAGCTGGAGCTGGTCTCCGCCAAGGACCTGAAGGACGTGAACCTCATCTCCAAGATGGACGTCTACGCCGTCGTCTTCCTCGACGGCGACGCCTACTACGGCAAGCAGAAGACCAAGACCAAAGCCGTCCGCGCCTGCGGCACCAACCCCACCTTCAATTTCCCCATGAGGTTCACCGTCGACGACACTCTCACCCAACAGAACCGCCTCTCCCTCCAAGTCAAGCTCGTCTGCGAGCGCAGCCTCGGCGACAAGGACATCGGCGTCGTTTACGTCCCCGTCAAGGAGCTCTTCGACTCCGCCGACCCCAAGAACATGAAGTTCATATCGTACCAGGTCCGACGACCCTCCGGGAAGCCCAAGGGCGAGCTCAGCTTTTCTTATAAATTTGGGGAGAAGGTCGCCGCGCCGGTGCCGGAGGTGGCCAAGAAAGGGGAGCCGGTGACGGCTTATCCGGTTGGAGGACCGTCCGCGCCGGCGTACGGGGCGTACCCTCTTCAGGCGACGAGTTCGTCCGGGTCGGGTTACCCGCCGCCTCAACCCGGGTATGGCTACCCGCCGCCGCCGCCTGGGGCTGGATACCCGGAAGCGCCTCAACCGGGTTACGGGTACCCACCGCAGCAACCGGGCTACGCTTACCCGCCTCAGCAGCCCGGGTACGGGTACCAACCGCCGCCGCCGGGTTACGGGTACCCGCCGGTGCAGCAAGTGCAGCAACCGGCAAAGAAGAAGAGCAAGTTGGGAATGGGATTGGGCGCTGGGTTGCTAGGAGGTGCCCTTGGTGGGTTGTTGATTGGAGATATGATTTCCGATGGAGGCGGTGGATGCGGTGGCGGCGGCTGCGGCGGCGGCGGTTGCGGTGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

295

Amino Acids

30.93

Weight (kDa)

8.86

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 107	2.8e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AasI	GACNNNNNNGTC	2 cut(s)	281, 529
AatII	GACGTC	1 cut(s)	81
Acc65I	GGTACC	3 cut(s)	627, 681, 708
AccB1I	GGYRCC	6 cut(s)	158, 430, 627, 681, 708, 791
AccI	GTMKAC	2 cut(s)	81, 198
AccII	CGCG	3 cut(s)	150, 425, 491
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	68, 500
AcyI	GRCGYC	3 cut(s)	78, 108, 282
AfaI	GTAC	7 cut(s)	350, 500, 509, 629, 677, 683, 710
AgsI	TTSAA	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	351, 586
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 740, 772
AloI	GAACNNNNNNTCC	4 cut(s)	50, 82, 212, 244
AluBI	AGCT	6 cut(s)	22, 28, 244, 307, 388, 393
AluI	AGCT	6 cut(s)	22, 28, 244, 307, 388, 393
Alw21I	GWGCWC	2 cut(s)	309, 390
Alw26I	GTCTC	1 cut(s)	37
Ama87I	CYCGRG	2 cut(s)	560, 671
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	6 cut(s)	258, 637, 667, 721, 730, 858
ApoI	RAATTY	1 cut(s)	404
Asp718I	GGTACC	3 cut(s)	627, 681, 708
AspLEI	GCGC	6 cut(s)	152, 258, 427, 493, 610, 776
AspS9I	GGNCC	3 cut(s)	43, 355, 482
AsuHPI	GGTGA	3 cut(s)	184, 202, 472
AvaI	CYCGRG	2 cut(s)	560, 671
AvaII	GGWCC	3 cut(s)	43, 355, 482
BaeGI	GKGCMC	1 cut(s)	796
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	6 cut(s)	158, 430, 627, 681, 708, 791
BanII	GRGCYC	2 cut(s)	309, 390
BbsI	GAAGAC	2 cut(s)	85, 134
Bbv12I	GWGCWC	2 cut(s)	309, 390
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	6 cut(s)	270, 649, 679, 733, 742, 845
BccI	CCATC	2 cut(s)	67, 824
BceAI	ACGGC	5 cut(s)	71, 118, 128, 133, 480
BciT130I	CCWGG	2 cut(s)	353, 588
BciVI	GTATCC	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	785
BfoI	RGCGCY	2 cut(s)	611, 777
BfuI	GTATCC	1 cut(s)	590
BlpI	GCTNAGC	1 cut(s)	389
Bme18I	GGWCC	3 cut(s)	43, 355, 482
BmeT110I	CYCGRG	2 cut(s)	560, 671
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	43, 355, 482
BmiI	GGNNCC	7 cut(s)	160, 432, 456, 629, 683, 710, 793
BmsI	GCATC	1 cut(s)	833
BpiI	GAAGAC	2 cut(s)	85, 134
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	2 cut(s)	38, 44
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	389
BsaHI	GRCGYC	3 cut(s)	78, 108, 282
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	7 cut(s)	39, 262, 378, 560, 587, 671, 796
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 212, 242
Bse118I	RCCGGY	5 cut(s)	427, 457, 493, 715, 736
BseBI	CCWGG	2 cut(s)	353, 588
BseDI	CCNNGG	7 cut(s)	39, 262, 378, 560, 587, 671, 796
BseGI	GGATG	1 cut(s)	848
BseMII	CTCAG	2 cut(s)	403, 677
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	6 cut(s)	270, 649, 679, 733, 742, 845
BseYI	CCCAGC	1 cut(s)	776
BsgI	GTGCAG	2 cut(s)	740, 749
Bsh1236I	CGCG	3 cut(s)	150, 425, 491
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	6 cut(s)	158, 430, 627, 681, 708, 791
BsiHKAI	GWGCWC	2 cut(s)	309, 390
BsiHKCI	CYCGRG	2 cut(s)	560, 671
BsiWI	CGTACG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	443
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	2 cut(s)	560, 671
Bsp1286I	GDGCHC	3 cut(s)	309, 390, 796
Bsp1720I	GCTNAGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	2 cut(s)	402, 676
BspFNI	CGCG	3 cut(s)	150, 425, 491
BspLI	GGNNCC	7 cut(s)	160, 432, 456, 629, 683, 710, 793
BspQI	GCTCTTC	2 cut(s)	314, 743
BspT107I	GGYRCC	6 cut(s)	158, 430, 627, 681, 708, 791
BspTNI	GGTCTC	1 cut(s)	37
BsrFI	RCCGGY	5 cut(s)	427, 457, 493, 715, 736
BssAI	RCCGGY	5 cut(s)	427, 457, 493, 715, 736
BssECI	CCNNGG	7 cut(s)	39, 262, 378, 560, 587, 671, 796
BssNI	GRCGYC	3 cut(s)	78, 108, 282
BssT1I	CCWWGG	3 cut(s)	39, 378, 796
Bst2UI	CCWGG	2 cut(s)	353, 588
Bst4CI	ACNGT	2 cut(s)	196, 486
Bst6I	CTCTTC	3 cut(s)	314, 519, 743
BstACI	GRCGYC	3 cut(s)	78, 108, 282
BstAPI	GCANNNNNTGC	1 cut(s)	727
BstC8I	GCNNGC	5 cut(s)	122, 154, 254, 386, 495
BstDEI	CTNAG	2 cut(s)	389, 663
BstEII	GGTNACC	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	848
BstFNI	CGCG	3 cut(s)	150, 425, 491
BstH2I	RGCGCY	2 cut(s)	611, 777
BstHHI	GCGC	6 cut(s)	152, 258, 427, 493, 610, 776
BstMAI	GTCTC	1 cut(s)	37
BstNI	CCWGG	2 cut(s)	353, 588
BstPI	GGTNACC	1 cut(s)	542
BstSLI	GKGCMC	1 cut(s)	796
BstUI	CGCG	3 cut(s)	150, 425, 491
BstV1I	GCAGC	6 cut(s)	270, 649, 679, 733, 742, 845
BstV2I	GAAGAC	2 cut(s)	85, 134
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	443
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	848
Cac8I	GCNNGC	5 cut(s)	122, 154, 254, 386, 495
CfoI	GCGC	6 cut(s)	152, 258, 427, 493, 610, 776
Cfr10I	RCCGGY	5 cut(s)	427, 457, 493, 715, 736
Cfr13I	GGNCC	3 cut(s)	43, 355, 482
Cfr9I	CCCGGG	2 cut(s)	560, 671
CseI	GACGC	2 cut(s)	116, 271
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	7 cut(s)	349, 499, 508, 628, 676, 682, 709
CviAII	CATG	2 cut(s)	184, 334
CviQI	GTAC	7 cut(s)	349, 499, 508, 628, 676, 682, 709
DdeI	CTNAG	2 cut(s)	389, 663
DrdI	GACNNNNNNGTC	2 cut(s)	281, 529
DseDI	GACNNNNNNGTC	2 cut(s)	281, 529
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	314, 519, 743
EarI	CTCTTC	3 cut(s)	314, 519, 743
EciI	GGCGGA	2 cut(s)	25, 307
Ecl136II	GAGCTC	2 cut(s)	307, 388
Eco130I	CCWWGG	3 cut(s)	39, 378, 796
Eco24I	GRGCYC	2 cut(s)	309, 390
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	3 cut(s)	43, 355, 482
Eco53kI	GAGCTC	2 cut(s)	307, 388
Eco57I	CTGAAG	2 cut(s)	68, 500
Eco88I	CYCGRG	2 cut(s)	560, 671
Eco91I	GGTNACC	1 cut(s)	542
EcoICRI	GAGCTC	2 cut(s)	307, 388
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	351, 586
EcoT14I	CCWWGG	3 cut(s)	39, 378, 796
EcoT38I	GRGCYC	2 cut(s)	309, 390
ErhI	CCWWGG	3 cut(s)	39, 378, 796
FaeI	CATG	2 cut(s)	187, 337
FaiI	YATR	6 cut(s)	185, 335, 344, 402, 567, 821
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	183, 333
FauI	CCCGC	4 cut(s)	555, 582, 666, 720
FblI	GTMKAC	2 cut(s)	81, 198
FokI	GGATG	1 cut(s)	855
FriOI	GRGCYC	2 cut(s)	309, 390
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	6 cut(s)	151, 257, 426, 492, 609, 775
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	2 cut(s)	38, 44
HaeII	RGCGCY	2 cut(s)	611, 777
HaeIII	GGCC	1 cut(s)	443
HgaI	GACGC	2 cut(s)	116, 271
HhaI	GCGC	6 cut(s)	152, 258, 427, 493, 610, 776
Hin1I	GRCGYC	3 cut(s)	78, 108, 282
Hin1II	CATG	2 cut(s)	187, 337
Hin6I	GCGC	6 cut(s)	150, 256, 425, 491, 608, 774
HinP1I	GCGC	6 cut(s)	150, 256, 425, 491, 608, 774
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	13, 314
HphI	GGTGA	3 cut(s)	184, 202, 472
Hpy166II	GTNNAC	5 cut(s)	58, 82, 192, 199, 289
Hpy188I	TCNGA	2 cut(s)	359, 829
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	5 cut(s)	58, 82, 192, 199, 289
Hpy99I	CGWCG	8 cut(s)	92, 104, 110, 200, 203, 287, 363, 526
HpyAV	CCTTC	3 cut(s)	43, 181, 409
HpyCH4III	ACNGT	2 cut(s)	196, 486
HpyCH4IV	ACGT	3 cut(s)	54, 78, 291
HpyCH4V	TGCA	2 cut(s)	721, 730
HpyF3I	CTNAG	2 cut(s)	389, 663
HpySE526I	ACGT	3 cut(s)	54, 78, 291
Hsp92I	GRCGYC	3 cut(s)	78, 108, 282
Hsp92II	CATG	2 cut(s)	187, 337
HspAI	GCGC	6 cut(s)	150, 256, 425, 491, 608, 774
KpnI	GGTACC	3 cut(s)	631, 685, 712
KroI	GCCGGC	1 cut(s)	493
KroNI	GCCGGC	1 cut(s)	495
LguI	GCTCTTC	2 cut(s)	314, 743
LmnI	GCTCC	5 cut(s)	4, 19, 25, 304, 454
Lsp1109I	GCAGC	6 cut(s)	270, 649, 679, 733, 742, 845
LweI	GCATC	1 cut(s)	833
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	3 cut(s)	54, 78, 291
MaeIII	GTNAC	4 cut(s)	460, 542, 620, 701
MboII	GAAGA	6 cut(s)	85, 139, 301, 506, 757, 760
MhlI	GDGCHC	3 cut(s)	309, 390, 796
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	2 cut(s)	175, 404
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	7, 308
MmeI	TCCRAC	2 cut(s)	382, 457
Mox20I	TGGCCA	1 cut(s)	443
MreI	CGCCGGCG	1 cut(s)	493
MroNI	GCCGGC	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MvaI	CCWGG	2 cut(s)	353, 588
MvnI	CGCG	3 cut(s)	150, 425, 491
NaeI	GCCGGC	1 cut(s)	495
NgoMIV	GCCGGC	1 cut(s)	493
NlaIII	CATG	2 cut(s)	187, 337
NlaIV	GGNNCC	7 cut(s)	160, 432, 456, 629, 683, 710, 793
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	460
PciSI	GCTCTTC	2 cut(s)	314, 743
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 96, 318
PdiI	GCCGGC	1 cut(s)	495
Pfl23II	CGTACG	1 cut(s)	498
PfoI	TCCNGGA	1 cut(s)	368
PleI	GAGTC	2 cut(s)	7, 308
PpsI	GAGTC	2 cut(s)	7, 308
PpuMI	RGGWCCY	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	402
Psp124BI	GAGCTC	2 cut(s)	309, 390
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	351, 586
PspEI	GGTNACC	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	2 cut(s)	351, 586
PspLI	CGTACG	1 cut(s)	498
PspN4I	GGNNCC	7 cut(s)	160, 432, 456, 629, 683, 710, 793
PspPI	GGNCC	3 cut(s)	43, 355, 482
PspPPI	RGGWCCY	1 cut(s)	43
RsaI	GTAC	7 cut(s)	350, 500, 509, 629, 677, 683, 710
RsaNI	GTAC	7 cut(s)	349, 499, 508, 628, 676, 682, 709
SacI	GAGCTC	2 cut(s)	309, 390
SalI	GTCGAC	1 cut(s)	197
SapI	GCTCTTC	2 cut(s)	314, 743
Sau96I	GGNCC	3 cut(s)	43, 355, 482
SchI	GAGTC	2 cut(s)	7, 308
SduI	GDGCHC	3 cut(s)	309, 390, 796
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	833
SgrAI	CRCCGGYG	3 cut(s)	427, 493, 715
SgrDI	CGTCGACG	1 cut(s)	197
SinI	GGWCC	3 cut(s)	43, 355, 482
SmaI	CCCGGG	2 cut(s)	562, 673
Sse9I	AATT	2 cut(s)	175, 404
SspMI	CTAG	1 cut(s)	785
SstI	GAGCTC	2 cut(s)	309, 390
StyI	CCWWGG	3 cut(s)	39, 378, 796
TaaI	ACNGT	2 cut(s)	196, 486
TaiI	ACGT	3 cut(s)	57, 81, 294
TaqI	TCGA	3 cut(s)	99, 198, 312
TasI	AATT	2 cut(s)	175, 404
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	6 cut(s)	258, 637, 667, 721, 730, 858
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	331, 350
TspMI	CCCGGG	2 cut(s)	560, 671
VpaK11BI	GGWCC	3 cut(s)	43, 355, 482
XapI	RAATTY	1 cut(s)	404
XmaI	CCCGGG	2 cut(s)	560, 671
XmiI	GTMKAC	2 cut(s)	81, 198
XspI	CTAG	1 cut(s)	785
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.