Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

7498095 .. 7498673

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1106800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAATAATCAATGCGAAGTGCTTGAGCTCCACCACCACCCCCAAAGTCGCCACCAAGCTAACCGCCGCAAAACCCACCTCCCTCCTCTCATTTCAAAACCTCCCAAAAGGCCTAACCCTCTCAAAACCTATTGAACTCTCCAACATGTCCCCTTCCCTCGCCGGCACCGCCATCGCCGGAGCCATCTTCTCCACCCTGAGCGCCTCCGACCCCGCCCTGGCCGCCCAGCAAGTCGCCCAAATCGCCGAAGGCGACAACCGCGGCCTCGCCCTCCTGCTGCCCATCATTCCCGCCATCGCTTGGGTTCTGTTCAACATTCTCCAACCGGCTCTCAACCAAATCAACCGCATGACAAACAAGAGCGTGGTCGTCGGGCTCGGGCTTGGTGGGTTGGCTGCGTCCGGGTTTGTCTCGACGCCCGAGGCGTCCGCCGGCGAAATAGCCATGATTGCTGCTGATGCCGCCGGTGACAACAGGGGGCAGCTGTTGCTGTTTGTGGTGGCTCCGGCGATTCTGTGGGTGCTGTACAACATTCTACAACCGGCTTTGAACCAAATCAACAGGATGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

193

Amino Acids

19.81

Weight (kDa)

9.58

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	86 - 118	2.6e-15	Photosystem II protein Y (PsbY)
PsbY	PF06298	158 - 190	6.7e-11	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccII	CGCG	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	222
AcyI	GRCGYC	2 cut(s)	419, 428
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	220, 303
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	4 cut(s)	98, 137, 316, 553
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	30, 61, 487
AluI	AGCT	3 cut(s)	30, 61, 487
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	418
Ama87I	CYCGRG	2 cut(s)	380, 422
AoxI	GGCC	3 cut(s)	112, 222, 265
ApeKI	GCWGC	4 cut(s)	280, 398, 455, 484
AspLEI	GCGC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	2 cut(s)	380, 422
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	32, 381
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	267, 385, 442, 496
BccI	CCATC	4 cut(s)	182, 194, 293, 305
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	8 cut(s)	69, 225, 265, 281, 399, 456, 465, 485
BlsI	GCNGC	8 cut(s)	70, 226, 266, 282, 400, 457, 466, 486
Bme1390I	CCNGG	2 cut(s)	221, 406
BmeT110I	CYCGRG	2 cut(s)	380, 422
BmiI	GGNNCC	3 cut(s)	169, 184, 507
BmrFI	CCNGG	2 cut(s)	221, 406
BmsI	GCATC	1 cut(s)	451
Bpu10I	CCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	406
BsaHI	GRCGYC	2 cut(s)	419, 428
BsaJI	CCNNGG	3 cut(s)	219, 262, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 303
Bse118I	RCCGGY	5 cut(s)	164, 328, 434, 467, 544
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	219, 262, 423
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	220, 303
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	267, 385, 442, 496
BseYI	CCCAGC	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	114, 224, 267
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	2 cut(s)	380, 422
BsiSI	CCGG	8 cut(s)	165, 180, 329, 405, 435, 468, 509, 545
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	220, 303
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	114, 224, 267
BsoBI	CYCGRG	2 cut(s)	380, 422
Bsp1286I	GDGCHC	2 cut(s)	32, 381
Bsp1407I	TGTACA	1 cut(s)	528
BspANI	GGCC	3 cut(s)	114, 224, 267
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	169, 184, 507
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	5 cut(s)	164, 328, 434, 467, 544
BsrGI	TGTACA	1 cut(s)	528
BssAI	RCCGGY	5 cut(s)	164, 328, 434, 467, 544
BssECI	CCNNGG	3 cut(s)	219, 262, 423
BssNI	GRCGYC	2 cut(s)	419, 428
Bst2UI	CCWGG	1 cut(s)	221
BstACI	GRCGYC	2 cut(s)	419, 428
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	166, 436
BstDEI	CTNAG	2 cut(s)	200, 576
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	8 cut(s)	170, 224, 245, 261, 452, 461, 464, 490
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	219, 404
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	267, 385, 442, 496
BsuRI	GGCC	3 cut(s)	114, 224, 267
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	2 cut(s)	160, 283
BtsCI	GGATG	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	166, 436
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	5 cut(s)	164, 328, 434, 467, 544
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	3 cut(s)	390, 417, 427
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	3 cut(s)	148, 352, 448
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	2 cut(s)	200, 576
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	421
Ecl136II	GAGCTC	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	2 cut(s)	32, 381
Eco53kI	GAGCTC	1 cut(s)	30
Eco88I	CYCGRG	2 cut(s)	380, 422
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	2 cut(s)	32, 381
FaeI	CATG	3 cut(s)	151, 355, 451
FaiI	YATR	3 cut(s)	149, 353, 449
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	147, 351, 447
FauI	CCCGC	2 cut(s)	223, 301
Fnu4HI	GCNGC	8 cut(s)	69, 225, 265, 281, 399, 456, 465, 485
FriOI	GRGCYC	2 cut(s)	32, 381
Fsp4HI	GCNGC	8 cut(s)	69, 225, 265, 281, 399, 456, 465, 485
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	8 cut(s)	69, 225, 265, 281, 399, 456, 465, 485
GsaI	CCCAGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	114, 224, 267
HapII	CCGG	8 cut(s)	165, 180, 329, 405, 435, 468, 509, 545
HgaI	GACGC	3 cut(s)	390, 417, 427
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	2 cut(s)	419, 428
Hin1II	CATG	3 cut(s)	151, 355, 451
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	514
HpaII	CCGG	8 cut(s)	165, 180, 329, 405, 435, 468, 509, 545
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	415
Hpy99I	CGWCG	2 cut(s)	377, 421
HpyAV	CCTTC	2 cut(s)	165, 245
HpyF10VI	GCNNNNNNNGC	8 cut(s)	170, 224, 245, 261, 452, 461, 464, 490
HpyF3I	CTNAG	2 cut(s)	200, 576
Hsp92I	GRCGYC	2 cut(s)	419, 428
Hsp92II	CATG	3 cut(s)	151, 355, 451
HspAI	GCGC	1 cut(s)	204
KroI	GCCGGC	2 cut(s)	164, 434
KroNI	GCCGGC	2 cut(s)	166, 436
KspI	CCGCGG	1 cut(s)	265
LmnI	GCTCC	3 cut(s)	35, 182, 511
Lsp1109I	GCAGC	4 cut(s)	267, 385, 442, 496
LweI	GCATC	1 cut(s)	451
MaeIII	GTNAC	1 cut(s)	470
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	32, 381
MmeI	TCCRAC	3 cut(s)	168, 234, 349
MreI	CGCCGGCG	1 cut(s)	434
MroNI	GCCGGC	2 cut(s)	164, 434
MspA1I	CMGCKG	2 cut(s)	264, 487
MspI	CCGG	8 cut(s)	165, 180, 329, 405, 435, 468, 509, 545
MspR9I	CCNGG	2 cut(s)	221, 406
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	8 cut(s)	170, 224, 245, 261, 452, 461, 464, 490
NaeI	GCCGGC	2 cut(s)	166, 436
NciI	CCSGG	1 cut(s)	406
NgoMIV	GCCGGC	2 cut(s)	164, 434
NlaIII	CATG	3 cut(s)	151, 355, 451
NlaIV	GGNNCC	3 cut(s)	169, 184, 507
NmuCI	GTSAC	1 cut(s)	470
NspI	RCATGY	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	114
PciI	ACATGT	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 425
PdiI	GCCGGC	2 cut(s)	166, 436
PfeI	GAWTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	8 cut(s)	70, 226, 266, 282, 400, 457, 466, 486
PscI	ACATGT	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	169, 184, 507
PvuII	CAGCTG	1 cut(s)	487
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SacI	GAGCTC	1 cut(s)	32
SacII	CCGCGG	1 cut(s)	265
SatI	GCNGC	8 cut(s)	69, 225, 265, 281, 399, 456, 465, 485
ScrFI	CCNGG	2 cut(s)	221, 406
SduI	GDGCHC	2 cut(s)	32, 381
SetI	ASST	7 cut(s)	32, 63, 83, 105, 133, 489, 575
SfaNI	GCATC	1 cut(s)	451
Sfr303I	CCGCGG	1 cut(s)	265
SgrAI	CRCCGGYG	2 cut(s)	434, 467
SgrBI	CCGCGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SseBI	AGGCCT	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	219, 404
TaqI	TCGA	1 cut(s)	416
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	4 cut(s)	71, 227, 267, 467
TfiI	GAWTC	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	4 cut(s)	280, 398, 455, 484
Tsp45I	GTSAC	1 cut(s)	470
Van91I	CCANNNNNTGG	1 cut(s)	303
XceI	RCATGY	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.