Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

14126584 .. 14127490

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G159900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTGCAACCTTAGGAACTACCATGGCTATGCTTCATCATAGGTGCTTCGCCATCAAGTCCTCCAAAAATATGAGCACTTATAAACCAACCATGAAACCTATTTCCCTACTGATCCTCAAAGACATACCTAAAAGCTTCATCCCCTTCAAATCTCCTATTAACTCCAAGTGTTCCACTTTGATCACCAGCACCATCGTTTCCACCTTGATTTCTTGCGGTCCTGCTTTCAGTGCGCAACAAATGGCAGAGATTGCAGAAGGCGATAACCGTGCCCTGGCACTCCTACTCCCCATCATTCCAGCTATACTGTGGGTGCTGTACAACATCCTTGGCCCAGCTTTAAACCAAATTAACAGAATGAGAAGTGAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

128

Amino Acids

13.89

Weight (kDa)

9.9

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
Acc16I	TGCGCA	1 cut(s)	237
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	3 cut(s)	138, 305, 341
AluI	AGCT	3 cut(s)	138, 305, 341
Alw21I	GWGCWC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	221, 335
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	3 cut(s)	62, 203, 302
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	183
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 335
BmrFI	CCNGG	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	24, 276, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse21I	CCTNAGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	24, 276, 331
BseGI	GGATG	2 cut(s)	141, 327
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	277
BsnI	GGCC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	80, 277
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	114, 183
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	24, 276, 331
BssMI	GATC	2 cut(s)	114, 183
BssT1I	CCWWGG	2 cut(s)	24, 331
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	272, 312
Bst6I	CTCTTC	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	141, 327
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	117, 186
BstMBI	GATC	2 cut(s)	114, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 254
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	277
Bsu36I	CCTNAGG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	141, 327
BtsIMutI	CAGTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	221, 335
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	25, 94
CviJI	RGCY	6 cut(s)	5, 29, 138, 305, 336, 341
CviKI_1	RGCY	6 cut(s)	5, 29, 138, 305, 336, 341
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	2 cut(s)	116, 185
DpnII	GATC	2 cut(s)	114, 183
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	2 cut(s)	24, 331
Eco47I	GGWCC	1 cut(s)	221
Eco81I	CCTNAGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	24, 331
ErhI	CCWWGG	2 cut(s)	24, 331
FaeI	CATG	2 cut(s)	28, 97
FaiI	YATR	8 cut(s)	26, 32, 42, 74, 84, 95, 128, 308
FatI	CATG	2 cut(s)	24, 93
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	128, 314
Fsp4HI	GCNGC	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	28, 97
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	136
HphI	GGTGA	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	157, 254
HpyCH4III	ACNGT	2 cut(s)	272, 312
HpyCH4V	TGCA	2 cut(s)	8, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 254
HpyF3I	CTNAG	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	28, 97
HspAI	GCGC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	114, 183
LguI	GCTCTTC	1 cut(s)	368
LpnPI	CCDG	6 cut(s)	202, 237, 263, 290, 315, 351
MalI	GATC	2 cut(s)	116, 185
MboI	GATC	2 cut(s)	114, 183
MhlI	GDGCHC	2 cut(s)	80, 277
MluCI	AATT	1 cut(s)	351
MnlI	CCTC	2 cut(s)	73, 128
MseI	TTAA	3 cut(s)	162, 344, 354
MslI	CAYNNNNRTG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	233, 254
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	114, 183
NlaIII	CATG	2 cut(s)	28, 97
NsbI	TGCGCA	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	7
PsiI	TTATAA	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	221, 335
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	162, 344, 354
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	114, 183
Sau96I	GGNCC	2 cut(s)	221, 335
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	80, 277
SetI	ASST	8 cut(s)	14, 47, 103, 133, 140, 209, 307, 343
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	24, 331
TaaI	ACNGT	2 cut(s)	272, 312
TasI	AATT	1 cut(s)	351
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	162, 344, 354
Tru9I	TTAA	3 cut(s)	162, 344, 354
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	26, 110, 130
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.