Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

7650659 .. 7651240

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1106700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCAATAATCAACGCAAAGTGCTTGAGCTCCACCACCACCCCCAAAGTCACCACCAAGCTAACCGCAGCAAAACCCACCTCCCTCCTCTCATTTCAAAACCTTCCAAAGGGCTTAAACCTCTCAAAACCAATTGAACTCCCCAACATGTCCCCTTCCCTAGCCGGCACAGCCATGGCAGGAGCCATCTTCTCCACCCTCAGTGCCTCCGACCCCGCTCTCGCAGCCCAGCAGATCGCCCAAATCGCCGAAGGCGACAACCGCGGCCTCGCCCTCCTGCTGCCTATCATTCCCGCCATAGCTTGGGTTCTGTTTAACATTCTTCAACCGGCACTCAACCAATTCAACCGCATGACAAACAAGAGCGTGATCGTCGGGCTCGGGCTCGGTGGGTTGGCTGCTTCTGGGTTCGTCTTGACCCCCGAGGCGTCCGCTGGAGAATTCGCCATGATTGCGGCTGATGCTTCCGCTGGCGACAATAGGGGGCAGTTGTTGCTGTTTGTGGTGGCTCCGGCGATTCTGTGGGTGCTTTACAACATTCTACAACCGGCTTTGAACCAAATCAACAGGATGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

194

Amino Acids

20.09

Weight (kDa)

9.58

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	86 - 118	2.3e-15	Photosystem II protein Y (PsbY)
PsbY	PF06298	159 - 191	6.8e-11	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	264
AciI	CCGC	9 cut(s)	66, 216, 262, 264, 294, 349, 432, 455, 468
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	109, 303
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	5 cut(s)	98, 137, 326, 346, 556
AluBI	AGCT	3 cut(s)	30, 61, 302
AluI	AGCT	3 cut(s)	30, 61, 302
Alw21I	GWGCWC	1 cut(s)	32
Ama87I	CYCGRG	2 cut(s)	380, 422
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	4 cut(s)	68, 224, 280, 398
ApoI	RAATTY	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	380, 422
BanII	GRGCYC	3 cut(s)	32, 381, 387
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	80, 236, 267, 385
BccI	CCATC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	6 cut(s)	69, 225, 265, 281, 399, 456
BlsI	GCNGC	6 cut(s)	70, 226, 266, 282, 400, 457
BmeT110I	CYCGRG	2 cut(s)	380, 422
BmiI	GGNNCC	2 cut(s)	184, 510
BmsI	GCATC	1 cut(s)	451
BpmI	CTGGAG	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	174, 262, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 303
Bse118I	RCCGGY	3 cut(s)	164, 328, 547
BseDI	CCNNGG	3 cut(s)	174, 262, 423
BseGI	GGATG	1 cut(s)	576
BseLI	CCNNNNNNNGG	2 cut(s)	109, 303
BseMII	CTCAG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	80, 236, 267, 385
BseYI	CCCAGC	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	2 cut(s)	380, 422
BsiSI	CCGG	4 cut(s)	165, 329, 512, 548
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	109, 303
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	267
BsoBI	CYCGRG	2 cut(s)	380, 422
Bsp1286I	GDGCHC	3 cut(s)	32, 381, 387
Bsp143I	GATC	2 cut(s)	234, 369
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	9 cut(s)	66, 216, 262, 264, 294, 349, 432, 455, 468
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	184, 510
BsrBI	CCGCTC	1 cut(s)	218
BsrFI	RCCGGY	3 cut(s)	164, 328, 547
BssAI	RCCGGY	3 cut(s)	164, 328, 547
BssECI	CCNNGG	3 cut(s)	174, 262, 423
BssMI	GATC	2 cut(s)	234, 369
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	166, 472
BstDEI	CTNAG	2 cut(s)	200, 579
BstDSI	CCRYGG	2 cut(s)	174, 262
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	237, 372
BstMBI	GATC	2 cut(s)	234, 369
BstMWI	GCNNNNNNNGC	7 cut(s)	170, 224, 245, 261, 452, 461, 493
BstNSI	RCATGY	1 cut(s)	151
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	80, 236, 267, 385
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	2 cut(s)	174, 262
BtsCI	GGATG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	166, 472
Cfr10I	RCCGGY	3 cut(s)	164, 328, 547
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	1 cut(s)	417
CviAII	CATG	4 cut(s)	148, 175, 352, 448
DdeI	CTNAG	2 cut(s)	200, 579
DpnI	GATC	2 cut(s)	236, 371
DpnII	GATC	2 cut(s)	234, 369
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	3 cut(s)	32, 381, 387
Eco53kI	GAGCTC	1 cut(s)	30
Eco88I	CYCGRG	2 cut(s)	380, 422
EcoICRI	GAGCTC	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	3 cut(s)	32, 381, 387
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	151, 178, 355, 451
FaiI	YATR	5 cut(s)	149, 176, 299, 353, 449
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	4 cut(s)	147, 174, 351, 447
FauI	CCCGC	2 cut(s)	223, 301
Fnu4HI	GCNGC	6 cut(s)	69, 225, 265, 281, 399, 456
FriOI	GRGCYC	3 cut(s)	32, 381, 387
Fsp4HI	GCNGC	6 cut(s)	69, 225, 265, 281, 399, 456
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	6 cut(s)	69, 225, 265, 281, 399, 456
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	4 cut(s)	165, 329, 512, 548
HgaI	GACGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	151, 178, 355, 451
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	4 cut(s)	165, 329, 512, 548
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	415
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	113, 165, 245
HpyF10VI	GCNNNNNNNGC	7 cut(s)	170, 224, 245, 261, 452, 461, 493
HpyF3I	CTNAG	2 cut(s)	200, 579
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	4 cut(s)	151, 178, 355, 451
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	234, 369
LmnI	GCTCC	3 cut(s)	35, 182, 514
Lsp1109I	GCAGC	4 cut(s)	80, 236, 267, 385
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	236, 371
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	2 cut(s)	234, 369
MboII	GAAGA	2 cut(s)	181, 314
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	3 cut(s)	32, 381, 387
MluCI	AATT	3 cut(s)	132, 341, 440
MmeI	TCCRAC	1 cut(s)	234
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	116, 315
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	3 cut(s)	264, 434, 470
MspI	CCGG	4 cut(s)	165, 329, 512, 548
MunI	CAATTG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	7 cut(s)	170, 224, 245, 261, 452, 461, 493
NaeI	GCCGGC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	234, 369
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	151, 178, 355, 451
NlaIV	GGNNCC	2 cut(s)	184, 510
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	151
PciI	ACATGT	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	6 cut(s)	70, 226, 266, 282, 400, 457
PscI	ACATGT	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	184, 510
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	32
SacII	CCGCGG	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	116, 315
SatI	GCNGC	6 cut(s)	69, 225, 265, 281, 399, 456
Sau3AI	GATC	2 cut(s)	234, 369
SduI	GDGCHC	3 cut(s)	32, 381, 387
SetI	ASST	7 cut(s)	32, 63, 83, 105, 123, 304, 578
SfaNI	GCATC	1 cut(s)	451
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	3 cut(s)	132, 341, 440
SsiI	CCGC	9 cut(s)	66, 216, 262, 264, 294, 349, 432, 455, 468
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	174
TasI	AATT	3 cut(s)	132, 341, 440
TauI	GCSGC	2 cut(s)	267, 458
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	116, 315
Tru9I	TTAA	2 cut(s)	116, 315
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	4 cut(s)	68, 224, 280, 398
Tsp45I	GTSAC	1 cut(s)	49
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	107
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	151
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.